BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15410.2
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478983 jgi|Araly1|478983|fgenesh2_kg.3__1684__AT3G15410.1 3186 0.0
Ahg951881 jgi|Araly1|951881|scaffold_23000001.1 150 3e-35
> Ahg478983 jgi|Araly1|478983|fgenesh2_kg.3__1684__AT3G15410.1
Length=2093
Score = 3186 bits (1725), Expect = 0.0
Identities = 2008/2135 (94%), Gaps = 57/2135 (3%)
Strand=Plus/Plus
Query 1 AAACTTTCCGAAAGGAGAGTGGTGG--C-ACT-GTAATAACGACGGAGAAGAACGAACGA 56
|||||||||| |||||||||||||| | ||| || |||||||||||||||||||||||
Sbjct 1 AAACTTTCCGGAAGGAGAGTGGTGGACCAACTGGTGGTAACGACGGAGAAGAACGAACGA 60
Query 57 ACG--Cg-a-gaga-tcgagagagagaga-AATATTTAATGGATCGGATTCTGAAAGCAG 110
||| || | || | ||||||||||||| | | |||||||||||||||||||||||| |
Sbjct 61 ACGAACGAACGA-ACGCGAGAGAGAGAGAGAGT-TTTAATGGATCGGATTCTGAAAGCGG 118
Query 111 CTCGAACATCTGGTTCGCTGAATCTTTCCAATCGTTCTCTCAATTTTGATCCTATTACCT 170
||||||| |||||||||||||||||||||||||| ||||| | | | |
Sbjct 119 CTCGAACGTCTGGTTCGCTGAATCTTTCCAATCG--CTCTC--------T-C-A--A--- 161
Query 171 GGGATGTACCTACTGAGGTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGGT 230
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 -GGATGTACCTATTGAGGTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGGT 220
Query 231 GGGAGGCTGTTGATTTGCAGAAGTTGATTTTGGCTCATAATGACATTGAGGTTTTAAGAG 290
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 221 GGGAGGCTGTTGATTTGCAGAAGTTGATATTGGCTCATAATGACATTGAGGTTTTAAGGG 280
Query 291 AAGATCTGAAGAACCTTGCCTGTTTGGTTGTGCTAAATGTCAGTCACAATAAACTCTCTC 350
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 281 AAGATCTGAAGAACCTTGCCTGTTTGGTTGTGTTAAATGTCAGTCACAATAATCTCTCTC 340
Query 351 AACTTCCAGCAGCTATTGGGGAGCTTACTGCGATGAAGTCTTTGGATGTGTCCTTTAACT 410
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 341 AACTTCCAGCAGCTATTGGGGAGCTTACTGCGATGAAGTCTTTGGATGTGTCTTTTAACT 400
Query 411 CAATATCAGAACTTCCTGAGCAAATTGGTTCAGCAATTTCTCTTGTCAAGCTTGACTGTT 470
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CTATATCAGAACTTCCTGAACAAATTGGTTCAGCAATTTCTCTTGTCAAGCTTGACTGTT 460
Query 471 CAAGCAATCGGCTTAAAGAATTGCCAGATTCTATTGGGAGATGTTTAGACTTATCCGATT 530
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 461 CAAGCAATCGGCTTAAAGAATTGCCAGAATCTATTGGGAGATGTTTAGACTTATCCGATT 520
Query 531 TAAAGGCCACAAATAATCAAATTTCCAGTTTGCCAGAAGACATGGTGAACTGTTCGAAAT 590
| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 521 TGAAGGCCTCAAATAATCAAATCTCCAGTTTGCCAGAAGACATGGTGAACTGTTCGAAAT 580
Query 591 TATCTAAACTGGATGTGGAGGGAAACAAGCTCACAGCTCTCTCTGAGAACCACATAGCAT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TATCTAAACTGGATGTGGAGGGAAACAAGCTCACAGCTCTCTCTGAGAACCACATAGCAT 640
Query 651 CATGGACCATGCTTGCAGAACTTAATGCAT-GTAAGAATATGCTGGGTGTTCTGCCACAA 709
|||||||||||||| ||||||||||||||| | |||||||||||| ||| ||||||||||
Sbjct 641 CATGGACCATGCTTACAGAACTTAATGCATCG-AAGAATATGCTGAGTGGTCTGCCACAA 699
Query 710 AACATCGGAAGTCTTTCGCGTCTTATCCGGCTTGACCTTCATCAGAACAAAAT-TTCGTC 768
|| |||||||| |||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 700 AATATCGGAAGCCTTTCGCGTCTTATTAGGCTTGACCTTCATCAGAACAAAATCTT-GTC 758
Query 769 TGTTCCACCATCAATAGGCGGTTGCTCCTCTCTTGTGGAGTTCTATTTGGGAATAAACTC 828
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 759 TGTTCCACCATCAATAGGCGATTGCTCCTCTCTTGTGGAGTTCTATTTGGGAATTAACTC 818
Query 829 ACTATCAACATTACCAGCAGAGATTGGAGATCTATCACGTCTAGGAACATTGGATCTTCG 888
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 819 ACTATCAACATTACCAGCCGAGATTGGAGATCTATCACGTCTAGGAACATTGGATCTTCG 878
Query 889 TTCTAATCAGCTCAAGGAATATCCAGTTGGGGCATGTAAATTGAAGCTCTCGTACCTAGA 948
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TTCTAATCAACTCAAGGAATATCCAGTTGGGGCATGTAAATTGAAGCTCTCGTACCTAGA 938
Query 949 TCTTTCAAATAATTCCTTGACAGGATTGCATCCTGAGCTCGGAAACATGACTACTCTGAG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TCTTTCAAATAATTCCTTGACAGGATTGCATCCTGAGCTCGGAAACATGACTACTCTGAG 998
Query 1009 AAAGCTTGTGCTTGTTGGCAATCCTTTGAGAACCCTTAGAAGCTCATTAGTAAATGGTCC 1068
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 999 AAAGCTTGTGCTTGTTGGCAATCCTTTGAGAACTCTTAGAAGCTCATTAGTAAATGGTCC 1058
Query 1069 TACAGCTGCTCTATTGAAGTATCTTAGGAGCCGCCTTTCTAATAGTGAAGAAACAAGTGC 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TACAGCTGCTCTATTGAAGTATCTTAGGAGCCGCCTTTCTAATAGTGAAGAAACAAGTGC 1118
Query 1129 AAGCACTCCAACAAAGGAAAATGTGATTGCTTCAGCAGCTCGTATGTCCATTTCTTCAAA 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 AAGCACTCCAACAAAGGAAAATGTGATTGCTTCAGCAGCTCGTATGTCCATTTCTTCAAA 1178
Query 1189 GGAACTTTCTCTGGAAGGTCTCAACTTGAGTGATGTCCCTTCAGAAGTTTGGGAATCTGG 1248
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1179 GGAACTTTCTCTGGAAGGTCTCAACTTGAGTGCTGTCCCTTCAGAAGTTTGGGAATCTGG 1238
Query 1249 TGAGATCACGAAAGTTAATCTTTCTAAGAACTCTATCGAGGAATTGCCTGCTCAACTTTC 1308
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TGAGATCTCGAAAGTTAATCTTTCTAAGAACTCTATCGAGGAATTGCCTGCTCAACTTTC 1298
Query 1309 TACATCTGTTTCCCTTCAGACATTAATTTTGTCAAGGAACAAAATTAAAGATTGGCCAGG 1368
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1299 TACATCTGTTTCCCTTCAGACTTTAATTTTGTCAAGGAACAAGATTAAAGATTGGCCTGG 1358
Query 1369 TGCAATCTTGAAATCACTTCCCAATCTTATGTGCTTGAAGCTGGATAATAATCCCCTGAA 1428
|||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1359 TGCAATCTTGAAGTCACTTCCCAATCTTGTGTGCTTGAAGTTGGATAATAATCCCCTGAC 1418
Query 1429 TCAGATTCCACTGGATGGGTTCCAAGTAGTCTCTGGGCTTCAGATTCTAGACCTAAGTGT 1488
|||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1419 GCAGATTCCACTGGATGGGTTTCAAGCAGTCTCTGGGCTTCGGATTCTAGACCTAAGTGG 1478
Query 1489 TAATGCAGTTTCCTTCAGAGAGCATCCTAAGTTTTGCCACTTGCCACAACTGCGAGAGCT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1479 TAATGCAGTTTCCTTCAGAGAGCATCCTAAGTTTTGCCACTTGCCACAACTGCAAGAGCT 1538
Query 1549 TTATTTGAGTCGAATCCAGCTATCTGAAGTCCCTGAAGATATCCTCAACTTATCTAACCT 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 TTATTTGAGTCGAATCCAGCTATCTGAAGTCCCTGAAGATATCCTCAACTTATCTAACCT 1598
Query 1609 GATTATTCTTGACTTGAACCAGAATTCACTTCAATCGATTCCCAAGGGTATCAAGAACAT 1668
|||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1599 GATTATCCTTGACTTGAACCAGAATTCACTTCAATCGATTCCGAAGAGTATCAAGAACAT 1658
Query 1669 GACTTCACTCAAACATCTAGACATATCCAACAACAACATTTCAAGTCTTCCTCCAGAACT 1728
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1659 GACTTCACTCAAACATCTGGACATATCCAACAACAACATTTCGAGTCTTCCTCCAGAACT 1718
Query 1729 GGGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTAAGAAGTAT 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1719 GGGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTAAGAAGCAT 1778
Query 1789 CAGGAGGCCAATTCTAGAAAGAGGAACAAAAGCTGTGTTGAACTACCTGAAAGACAGACT 1848
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1779 CAGGAGGCCAATTCTAGAAAGAGGAACGAAAGCTGTGTTGAACTACCTGAAAGACAGACT 1838
Query 1849 TCCAGATCAGTAGCTTCTACAACATTAACATCAACACCTATGTTGTTGTTTGTAAGATTT 1908
|||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 1839 TCCAGATCAGTAGCTTTTACAACATTAACTTCAAGACCTATGTTGTTGTTTGTAACATTT 1898
Query 1909 GTGTGAACACCAGATTGATTTT-ATTGATGAGAAATGCGTG-TGTCCCTTGTCTAAGATA 1966
|||| || | |||||||||| ||||||||||||||| || ||||| |||| | | |
Sbjct 1899 TTGTGT-CAACGGATTGATTTTTATTGATGAGAAATGC-TGGTGTCC-TTGT-T--G-TG 1951
Query 1967 TTTTCACTTTTGTTGGTGTGTAATCCAGTACGTCTGGTTCTGTGATATGTACTACAAGTC 2026
|| |||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1952 TT---ACTTTTGTTGGTGTGTAATCCAGTACGTCTTGTTGTGTGATATGTACTACAA--- 2005
Query 2027 TATAAACTCCAATGGCCTCAACAGGAGAAtt-tttttGTAACAAATTGGTTTCTTCTTTT 2085
| |||||| ||| |||||||||||||| ||||| || ||||||| |||||| ||||
Sbjct 2006 -A----CTCCAAAGGCTTCAACAGGAGAATTGTTTTTTTA-CAAATTGTTTTCTT-TTTT 2058
Query 2086 TGTTTCTGCATTTTTCATTGTCGAATGCTAATTTA 2120
||||||| ||||||||||||||||||||||| |||
Sbjct 2059 TGTTTCTCCATTTTTCATTGTCGAATGCTAACTTA 2093
> Ahg951881 jgi|Araly1|951881|scaffold_23000001.1
Length=238
Score = 150 bits (81), Expect = 3e-35
Identities = 144/170 (85%), Gaps = 21/170 (12%)
Strand=Plus/Plus
Query 68 cgagagagagagaAATATTTAATGGATCGGATTCTGAAAGCAGCTCGAACATCTGGTTCG 127
|||||||||||| | | |||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2 CGAGAGAGAGAG-AGT-TTTAATGGATCGGATTCTGAAAGCGGCTCGAACGTCTGGTTCG 59
Query 128 CTGAATCTTTCCAATCGTTCTCTCAATTTTGATCCTATTACCTGGGATGTACCTACTGAG 187
||||||||||||||||| ||||| | | | | ||||||||||| ||||
Sbjct 60 CTGAATCTTTCCAATCG--CTCTC--------T-C-A--A----GGATGTACCTATTGAG 101
Query 188 GTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGGT-GGGAGG 236
||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 102 GTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGCTCGGGAGG 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80560868175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5