BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15420.1
Length=521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478984 jgi|Araly1|478984|fgenesh2_kg.3__1685__AT3G15420.1 558 1e-158
Ahg909634 jgi|Araly1|909634|Al_scaffold_0002_2715 333 8e-91
> Ahg478984 jgi|Araly1|478984|fgenesh2_kg.3__1685__AT3G15420.1
Length=398
Score = 558 bits (302), Expect = 1e-158
Identities = 372/403 (92%), Gaps = 15/403 (4%)
Strand=Plus/Plus
Query 21 GGTTTTCGTATTTTCTCGAAAGATTCAACGG----A--AAAGATAGAGATAGATAGATGG 74
|||| |||||||| |||||||||||||| || | ||||| ||||| ||| ||||||
Sbjct 1 GGTTCTCGTATTTGCTCGAAAGATTCAAGGGAAAAACTAAAGAAAGAGAAAGAGAGATGG 60
Query 75 AGGAGGAATTTGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCATCAG 134
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAGGAATATGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCATCAG 120
Query 135 ATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGATGGCA 194
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ATGCTCCTTATACTTTATCAGGTTTGGATACATTGAATCCGGTGTTGACCATTGATGGCA 180
Query 195 AAATCAAGCTGGTTGGAGAATATATTGAAACGATTGGTACATGCCTTGCTTTCTCTGAAA 254
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GAATCAAGCTGGTTGGAGAATATATTGAAACAATTGGTACATGCCTTGCTTTCTCTGAAA 240
Query 255 AGGAAGAAGTTTCAGCAAGTGAAAACCAGATGCCACATAAGAAGATAATTGAACCTGTTG 314
|||||||||||||||||||||||||| | | | | | ||||||| ||||||||||||
Sbjct 241 AGGAAGAAGTTTCAGCAAGTGAAAAC-A-A-G--A-A---GAAGATAGTTGAACCTGTTG 291
Query 315 CAAAACTCCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGACAATGATGATGGAGAAA 374
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 292 CAAAACTCCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGAAAATGATGATGGAGAAA 351
Query 375 CAAAAACAAACAATTTGTAATAGTTTTTCCCTTGTTTAAGTCA 417
||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 352 TAAAAACAAACACTTTGTAAAAGTTTTTCCCTTGTTCAAGTCA 394
> Ahg909634 jgi|Araly1|909634|Al_scaffold_0002_2715
Length=300
Score = 333 bits (180), Expect = 8e-91
Identities = 280/324 (86%), Gaps = 24/324 (7%)
Strand=Plus/Plus
Query 71 ATGGAGGAGGAATTTGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCA 130
|||||||| || | ||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGGAGGACGAGTATGTTATGATCGATCTTGATGACGTTTCAAGGCACATTGACATTCCA 60
Query 131 TCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGAT 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGAT 120
Query 191 GGCAAAATCAAGCTGGTTGGAGAATATATTGAAACGATTGGTACATGCCTTGCTTTCTCT 250
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GACAAAATCAAGCTGGTTGGAGAATATATAGAAACGATTGGTACATGCCTTGCTTTCTCT 180
Query 251 GAAAAGGAAGAAGTTTCAGCAAGTGAAAACCAGATGCCACATAAGAAGATAATTGAACCT 310
|| || | | | ||||||||||| |||||| ||||| | || |
Sbjct 181 GACAA--A-----T----G----TGAAAACCAGACGCCACA---GAAGA-A---GA-CA- 216
Query 311 GTTGCAAAACTCCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGACAATGATGATGGA 370
||||| ||||||||||||||||| |||||||| |||||| ||||||||| ||| ||||||
Sbjct 217 GTTGCCAAACTCCACAAGATTCTCAAGTTTAGGTTAGCACCATTAGACAGTGAAGATGGA 276
Query 371 GAAACAAAAACAAACAATTTGTAA 394
| ||||||||||| || |||||||
Sbjct 277 GTAACAAAAACAACCACTTTGTAA 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18963327733
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5