BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15430.1
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478986 jgi|Araly1|478986|fgenesh2_kg.3__1687__AT3G15430.2 3127 0.0
> Ahg478986 jgi|Araly1|478986|fgenesh2_kg.3__1687__AT3G15430.2
Length=2147
Score = 3127 bits (1693), Expect = 0.0
Identities = 1866/1948 (96%), Gaps = 17/1948 (1%)
Strand=Plus/Plus
Query 93 CAGTTCGAAGAATCTGGCGTGTTCAGGTGGATTGATTCTTGCGATCTGACCCTTCTCATG 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CAGTTCGAAGAATCTGGCGTGTTCAGGTGGATTGATTCTTGCGATCTGACCCTTCTCATG 273
Query 153 ATTAGTTTCCGATCTTCGAATAGACCAACTGCGAGATTCTCATCTATAACTCCGTTTTCC 212
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ATTAGTTTTCGATCTTCGAATAGACCAACTGCGAGATTCTCATCTATAACTCCGTTTTCC 333
Query 213 TATTCGATTTCTTATCTCTTTCTACCATCCAACGTGTTCTTCATACATTACTTCAATTGC 272
||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 334 TATTCAATTTCTTATCTCTTTCTACCATCCAACGTCTTCTTCATACGCTACTTCAATTGC 393
Query 273 TCTCGATTTCGCCTCAAAATCTGATCCTCTAGTAGCTTGAAGCAACCCAAAGTCTCGTCC 332
||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 394 TCTAGATTTCGCCTCAAAATCTGACCCTCTTGTAGCTTGAAGCCACCCAAAGTCTCGTCT 453
Query 333 TTTAC--GTTCAATTAGGTCATTTTGAAACCCTGTTCTTAGAATTAGGAAGGGAA-GAAA 389
||||| |||| |||||||||||||||||| ||||||||||||||||||| |||| |||
Sbjct 454 TTTACGTGTTCGATTAGGTCATTTTGAAACTCTGTTCTTAGAATTAGGAA-GGAATAAAA 512
Query 390 TGGCTGATCGAAACTGTTTGATTTCGTTCGAGGATCTTCCTTCTCATTTGATCTTGGAGG 449
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TGGCTGACCGAAACTGGTTGATTTCGTTCGAGGATCTTCCTTCTCATTTGATCTTGGAGG 572
Query 450 TGTTGACCTCTGGGAGGCTTAGTGCGGTTGATCTACTTAGCTTGGAATTGACTTCTAAGG 509
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 573 TGTTGACCTCTGGGAAGCTTAGTGCGGTTGATCTACTTAGCTTGGAATTGACCTCTAAGG 632
Query 510 TTTTCGGAGGGAGCCATGGATTCTATCCTTTGAAATTCAGATCATTAGCTGATTATGCGG 569
||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||
Sbjct 633 TTTTCGGAGGGAGCCATGGATTCTACCCTTTGAAATTCAGATCACTCGCTGATTACGCGG 692
Query 570 CGTCTCAGCTTTGCTCTATGCACCCTGTCTACGTGGGAATGGGTTTGACTACACAGAAAG 629
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 693 CCTCTCAGCTTTGCTCTATGCATCCTGTCTACGTGGGAATGGGTTTGACTACACAGAAAG 752
Query 630 AGCTCTTTGCCAATTGTGAGGGAAACTGGAAGCGGCTTTTTAGTTTCTTGCAGTCAGTTG 689
|||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 753 AGCTCTTTGCCAATTGTGAGGGAAACTGGAAGCGGCTTTTGAGTTTCCTACAGTCAGTTG 812
Query 690 AGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAATGCAAATTGCAACAGGAAAGT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 AGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAATGCAAATTGCAACAGGAAAGT 872
Query 750 ATCACACTTTGCTAATCAACAACTCAAAGGTTTATTCTTGTGGTGTAAGTTTGTCCGGTG 809
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 873 ATCACACTTTGCTAATCAATAACTCAAAGGTTTATTCTTGTGGTGTAAGTTTGTCCGGTG 932
Query 810 TTCTTGCTCATGGCTCTGAAACTACTCAGTGTGTAGCATTTACACCTATAGAGTTTCCGT 869
|||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 933 TTCTTGCTCATGGCCCTGAAACTACTCAATGCGTAGCATTTACGCCTATAGAGTTTCCGT 992
Query 870 TCCCTGCTCAAGTGGCTCAAGTCTCAGCCACACAGAACCATTCTGCTTTCGTATTGCAAT 929
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TCCCTGCACAAGTTGCTCAAGTCTCAGCCACACAGAACCATTCTGCTTTCGTATTGCAAT 1052
Query 930 CTGGACAGGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTA 989
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 CTGGAGAGGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTA 1112
Query 990 GCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGGGGACTCCTTGTAAGCAGG 1049
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1113 GCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGAGGACTCCTTGTAAGCAGG 1172
Query 1050 TGGCTGCTGGGCTTCACTTTACTGTGTTTCTATCAAGGGAAGGGCATGCATATACTTGTG 1109
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1173 TGGCTGCTGGGCTTCACTTCACTGTGTTTCTATCAAGGGAAGGGCATGCGTATACTTGTG 1232
Query 1110 GATCAAATACACATGGGCAGCTTGGTCATGGAGATACCTTGGACAGACCAGTACCCAAAG 1169
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1233 GATCAAATACACATGGGCAGCTTGGTCATGGCGATACCATGGACAGACCAGTACCCAAAG 1292
Query 1170 TTGTTGAGTTTCTTAAAACCATTGGCCCTGTGGTGCAAATTGCAGCTGGACCCAGCTATG 1229
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1293 TTGTTGAGTTTCTTAAAAACATTGGCCCTGTGGTGCAAATCGCAGCTGGACCCAGCTATG 1352
Query 1230 TTTTAGCTGTAACACAGGATGGCTCGGTTTACTCGTTTGGCTCTGGTTCTAACTTCTGTC 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 TTTTAGCTGTAACACAGGATGGCTCGGTTTACTCGTTTGGCTCTGGTTCTAACTTCTGTC 1412
Query 1290 TTGGTCATGGAGAGCAACAGGACGAGCTCCAGCCGCGTGTTATTCAGGCTTTTAAAAGAA 1349
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1413 TTGGTCATGGAGAGCAACAGGACGAGCTTCAGCCGCGTGTTATTCAGGCTTTTAAAAGAA 1472
Query 1350 AAGGTATTCACATACTCCGTGTCTCTGCAGGCGATGAGCACGCCGTGGCACTTGATTCCA 1409
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1473 AAGGTATTCATATACTCCGTGTCTCTGCAGGTGATGAACACGCCGTGGCACTTGATTCCA 1532
Query 1410 ATGGCCGTGTCTACACATGGGGTAAAGGTTACTGTGGTGCTCTAGGCCATGGAGACGAAA 1469
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1533 ATGGCCGTGTCTACACATGGGGTAAAGGTTACTGCGGTGCTCTAGGCCATGGAGACGAAA 1592
Query 1470 ACGACAAGATCACTCCTCAAGTTTTGGTCAATCTCAACAATTGCCTTGCTGTCCAGGTGT 1529
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1593 ATGACAAGATCACTCCTCAAGTTTTGGTCAATCTCAAGAATTGCCTTGCTGTCCAGGTGT 1652
Query 1530 GTGCAAGAAAAAGGAAGACTTTTGTTTTGGTGGAAGGTGGATTACTATATGGATTTGGGT 1589
||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 1653 GTGCAAGGAAAAGGAAGACTTTTGTTTTGGTGGAAGGTGGGTTATTGTATGGATTTGGGT 1712
Query 1590 GGATGGGGTTTGGAAGCCTTGGGTTCCCGGACAGAGGAGTTTCAGACAAAGTTCTTAGGC 1649
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1713 GGATGGGGTTTGGAAGCCTTGGGTTCCCAGACAGAGGAGTTTCAGACAAAGTTCTGAGGC 1772
Query 1650 CAAGAGTATTGGAGTGTCTGAAACCACACCGTGTCTCTCAAGTTAGCACCGGTTTGTATC 1709
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1773 CAAGAGTATTGGAGTGTCTGAAACCACACCGTGTCTCTCAAGTTAGCACCGGCTTGTATC 1832
Query 1710 ACACCATTGTGGTCACTCAACGTGGTCGCATTTTTGGGTTTGGAGATAACGAAAGAGCTC 1769
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1833 ACACCATTGTGGTCACTCAACGTGGTCGCATTTTTGGGTTTGGAGATAATGAAAGAGCTC 1892
Query 1770 AGCTTGGTCACGACTCACTCCGTGGCTGCTTAGAACCTACCGAAATCTTTCTCCATTGTG 1829
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1893 AGCTTGGTCATGACTCACTCCGCGGCTGCTTAGAACCAACCGAAATCTTTCTCCATTGTG 1952
Query 1830 GCCGTTCTCGTAGCCGGCTTTGTTGATCCAAGGTATAGATAAACAACCATGTTTGTATGA 1889
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1953 GCCGTTCTCGTAGCCGGCTTTGTTGATCCAAGGTATAGATAAACAACCCTGTTTGTATGA 2012
Query 1890 ACCGGATTGAGATTGGATTTACCGGTTAGTGTATCTTGTATTGATTTGTATCTGTTTGAT 1949
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2013 ACCGGATTGGGATTGGATTTACCGGTTAGTGTATGTTGTATTGATTTGTATCTGTTTGAT 2072
Query 1950 TTCTTCAAGTTGTGAGAGTAATAGAAGATATTTCCAGACACCTTAGTGCAGAGAATTATG 2009
|| ||||||||||| |||||||||||||||||||| | || | ||| | | |||
Sbjct 2073 TT-TTCAAGTTGTGTGAGTAATAGAAGATATTTCC-G-CA-----G---AGA-A-TCATG 2119
Query 2010 ACATGAGTTAATTAATCTAAGAAGTTTT 2037
|||||||||| |||||||||||||||||
Sbjct 2120 ACATGAGTTAGTTAATCTAAGAAGTTTT 2147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76637572940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5