BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15440.1

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929348 jgi|Araly1|929348|scaffold_301805.1                        627    3e-179


> Ahg929348 jgi|Araly1|929348|scaffold_301805.1
Length=477

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 400/429 (93%), Gaps = 5/429 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGTGTATTGTGGATGATGTATCGGATAGTACATGTATGGTGACGCCAATCTATTAT  60
            ||||||| ||||||||||||| |||| ||||| |||||||||||||| |||||||| |||
Sbjct  23   ATGGAGTATATTGTGGATGATATATCAGATAGCACATGTATGGTGACACCAATCTACTAT  82

Query  61   TCGAAAGAAACAACTCAAGATCGTCAGACTTTTTTGTTTGATTTTGAAGTTGTCTACACA  120
            |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  83   TCGAGAGAAACAACTCAAGATCGTCAAACTTTTTTGTTTGATTTTGAAGTTGTCTACACA  142

Query  121  AAAGTGCCTGAGCCAAATAGTGATGGAGAATCTGACTACATGTCCAGTAAGGTTAAAACA  180
            |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  143  AAAGTGCCTGAGCCAAATAGTGATGGAGAAGCTGACTACATGTCCAATAAGGTTAAAACA  202

Query  181  AGGACTACAAATCAACTTCAAAGATATGGTCGAGACGAGTTCATTGGTCAAGATGAAGAA  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct  203  AGGACTACAAATCAACTTCAAAGATATGGTCGAGACGAGTTCATTGGTCAAGATGTGGAA  262

Query  241  CAAATCAAAGCCACAATCTACGAAATCCTCAATGATGTTGGTGTTCCTCCGTATCTAGGG  300
            | ||| |||||||||||||||||||| ||| ||||  ||||||||||||| |||| ||||
Sbjct  263  CGAATAAAAGCCACAATCTACGAAATTCTCTATGAAATTGGTGTTCCTCCTTATCGAGGG  322

Query  301  ATCATGAAAACATTTGCTGAAGAAATTCAAA-GCATATTGAATTCACCTCTGGAGAAATT  359
            |||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct  323  ATCATGAAAACATTTGCTGAAGAAAT-CGAATGCATATTGAATTCACCTCTGGAGAAATT  381

Query  360  GGAGAAGATAAAAGTAAAGATTGAAGTTGTTGCACACATGTTTCCTGAAGATGATGAGAT  419
            ||||||||| ||||||||||| |||||||||||||||| |||||||||||||||  | ||
Sbjct  382  GGAGAAGATCAAAGTAAAGATCGAAGTTGTTGCACACACGTTTCCTGAAGATGA--A-AT  438

Query  420  CGATGTTGA  428
            |||||||||
Sbjct  439  CGATGTTGA  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15567480312


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5