BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15450.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478991 jgi|Araly1|478991|fgenesh2_kg.3__1692__AT3G15450.1 1299 0.0
Ahg914474 jgi|Araly1|914474|Al_scaffold_0001_4728 719 0.0
> Ahg478991 jgi|Araly1|478991|fgenesh2_kg.3__1692__AT3G15450.1
Length=875
Score = 1299 bits (703), Expect = 0.0
Identities = 786/825 (95%), Gaps = 9/825 (1%)
Strand=Plus/Plus
Query 60 AAC-GAAAATGTTGGCAATATTTCAGAAAGCTTTTGCTCACCCACCGGAAGAACTCAACA 118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 AACAGAAAATGTTGGCAATATTTCAGAAAGCTTTTGCTCACCCACCGGAAGAACTCAACA 76
Query 119 GTCCGGCTTCTCAT-TTCTCCGGCAAAACTCCTAAACTTCCCGGCGAAACTCTCTCCGAC 177
||||||| |||||| || |||||| |||| |||||||||||||| |||||||||||||||
Sbjct 77 GTCCGGCGTCTCATGTT-TCCGGCGAAACCCCTAAACTTCCCGGAGAAACTCTCTCCGAC 135
Query 178 TTCCTCTCTCATCACCAAAACAATGCTTTCTCTATGAACTTCGGCGACTCCGCCGTCTTA 237
|||||||||| ||||||||||| ||| |||| |||||||||||||| ||||||||||||
Sbjct 136 TTCCTCTCTCGTCACCAAAACACCGCTCTCTCCATGAACTTCGGCGATTCCGCCGTCTTA 195
Query 238 GCTTACGCTCGCCAAGAAACCTCTCTTCGTCAAAGGTTGTTCTGTGGACTAGATGGGATC 297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 196 GCTTACGCTCGCCAAGAAACCTCTCTTCGTCAGAGGTTGTTCTGTGGACTAGATGGGATC 255
Query 298 TACTGTATGTTTCTAGGGAGATTGAATAATCTCTGTACATTGAATCGACAATACGGTTTA 357
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 256 TACTGTATGTTTCTAGGGAGATTGAGCAACCTCTGTACATTGAATCGACAATACGGTTTA 315
Query 358 TCTGGGAAGAACTCAAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTGAT 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TCTGGGAAGAACTCGAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTGAT 375
Query 418 CGTGGTCCTTACCCAGCAGATCAAGTTC-TTAGAGGTCTTGAGGGAAGCTTCGCTTTCGT 476
||||||||||||||||| || |||| || |||||||||||||||||||||||||||||||
Sbjct 376 CGTGGTCCTTACCCAGCTGACCAAG-TCATTAGAGGTCTTGAGGGAAGCTTCGCTTTCGT 434
Query 477 TGTCTACGATACTCAAA-CTTCCTCTGTTTTCTCAGCTCTGAGTTCTGATGGAGGAGAGA 535
|||||||||| |||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 435 TGTCTACGATTCTCAAAGC-TCCTCTGTTTTCTCAGCTTTGAGTTCTGATGGAGGAGAGA 493
Query 536 GTCTTTACTGGGGAATTTCTGGAGACGGATCTGTTGTAATGTCTGATGATATTCAGATCA 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 494 GTCTTTACTGGGGAATTTCTGGAGACGGATCTGTTGTGATGTCTGATGATATTCAGATCA 553
Query 596 TAAAGCAAGGCTGTGCTAAATCGTTTGCTCCTTTCCCTAATGGATGTATGTTTCATAGTG 655
|||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 554 TAAAGCAAGGATGTGCTAAATCATTTGCTCCTTTCCCTACTGGGTGTATGTTTCATAGTG 613
Query 656 AGACAGGGCTTAAGAGCTTTGACCATCCGACTAATATGATGAAGGCAATGCCGAGGATTG 715
|||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||
Sbjct 614 AGACAGGGCTTAAGAGCTTTGAACATCCGACTAATAAGATGAAGGCAATGGCGAGGATTG 673
Query 716 ATAGTGAAGGTGTTCTTTGTGGAGCTAGTTTCAAAGTTGATGCTTGTTCTAAGATCAATA 775
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 674 ATAGTGAAGGTGTTCTTTGTGGAGCTAATTTCAAAGTTGATGCTTGTTCTAAGATCATTA 733
Query 776 GTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTCTCGTTGATTTTGCT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTCTCGTTGATTTTGCT 793
Query 836 TCTAGTTTCGTTAACTCTTGCTTCTTTGTTGCGTTTTCTTTTTAT 880
||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 794 TCTTGTTTCGT-AACTCTTGCTTCTT-GTTGCGTTTTCTTTTTAT 836
> Ahg914474 jgi|Araly1|914474|Al_scaffold_0001_4728
Length=762
Score = 719 bits (389), Expect = 0.0
Identities = 649/771 (84%), Gaps = 32/771 (4%)
Strand=Plus/Plus
Query 67 ATGTTGGCAATATTTCAGAAAG-CTTTTGCTCACCCACCGGAAGAACTCAACAGTCCGGC 125
|||||||| || ||||| |||| | |||| ||| |||||||||||||| |||||||||||
Sbjct 1 ATGTTGGCTATTTTTCA-AAAGACGTTTGTTCATCCACCGGAAGAACTAAACAGTCCGGC 59
Query 126 TTCTCATTTCTCCGGC-AAAACTCCTAAACTTCCCGGCGAAACTCTCTCCGACTTCCTCT 184
||| ||||| ||||| ||||| ||||||||||| || ||||||||||| |||||||| |
Sbjct 60 GTCTAATTTCACCGGCGAAAAC-CCTAAACTTCCGGGAGAAACTCTCTCTGACTTCCTTT 118
Query 185 CTCATCACCAAAACAATGCTTTCTCTATGAACTTCGGCGACTCCGCCG-TCTTAGCTTAC 243
|||| |||| ||| ||||||||| ||||||||||| |||||||| | |||| |||| |
Sbjct 119 CTCACCACCCCGACACTGCTTTCTCAATGAACTTCGGTGACTCCGCTGTTCTT-GCTTTC 177
Query 244 GCT-CG-CCAAGAAACCTCTCTTCGTCAAAG-GTTGTTCT-GTGGACTAGATGGGATCTA 299
| | || | | ||| ||||| || |||||| | |||| | ||||| | ||||| |||||
Sbjct 178 G-TCCGTTC-ACAAAACTCTCATCATCAAAGAG-TGTT-TAGTGGAATCGATGGAATCTA 233
Query 300 CTGTATGTTTCTAGGGAG-ATTGAATAATCTCTGTACA-TTGAATC-GACAATACGGTTT 356
|||| ||||||| |||| |||||| |||||||| | | ||||| | ||||||||||||
Sbjct 234 CTGTGTGTTTCT-TGGAGCATTGAACAATCTCTGCA-ATTTGAA-CAAACAATACGGTTT 290
Query 357 ATCTGGGAAGAAC-TCAAACGAGGCAATGTTTGTGATCGAAGCTTATCGAACACTTCGTG 415
|||| |||| ||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 291 ATCT-GGAAAAACTTCAAACGAAGCTATGTTTGTTATCGAAGCTTATCGAACACTTCGTG 349
Query 416 ATCGTGGTCCTTACCCAGCAGATCAAGTTCTTAGAGGTCTTGAGGGAAGCTTCGCTTTCG 475
||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| |
Sbjct 350 ATCGTGGTCCTTATCCAGCTGATCAAGTTCTTAGAGGTCTTGACGGAAGTTTTGCTTTTG 409
Query 476 TTGTCTACGATACTCAAACTTCCTCTGTTTTCT-CAGCTCTGAGTTCTGATGGAGGAGAG 534
| ||||| ||||||||||| ||||||||||| | |||||||| | |||||||||| ||||
Sbjct 410 TCGTCTATGATACTCAAACCTCCTCTGTTTT-TGCAGCTCTGGGATCTGATGGAGAAGAG 468
Query 535 AGTCTT-TACTGGGGAATTTCTGGAGACGGATCTGTTGTAATGTCTGATGATATTCAGAT 593
||| || || |||||||| ||| ||| ||||||||||| ||||||||||||||| ||||
Sbjct 469 AGT-TTGTATTGGGGAATAGCTGCAGATGGATCTGTTGTTATGTCTGATGATATTAAGAT 527
Query 594 CATAAAGCAAGGCTGTGCTAAATCGTTTGCTCCTTTCCCTAAT-GGATGTATGTTTCATA 652
||| |||||| | ||||| |||||||| || ||||| || || || |||||||||||||
Sbjct 528 CATTAAGCAAAGTTGTGCGAAATCGTTCGCGCCTTTTCC-AACCGGTTGTATGTTTCATA 586
Query 653 GTGAGACAGGGCTTAA-GAGCTTTGACCATCCGACTAATATGATGAAGGCAATGCCGAGG 711
||||||| || || | ||| ||||| ||||||| || | ||||||||| |||||||||
Sbjct 587 GTGAGACTGGT-TTGATGAGTTTTGAGCATCCGAAAAACAAGATGAAGGCGATGCCGAGG 645
Query 712 ATTGATAGTGAAGGTGTTCTTTGTGGAGCTAG-TTTCAAAGTTGATGCTTGTTCTAAGAT 770
|||||||||||||| ||| | |||||||||| ||| ||||||||||||||||| |||||
Sbjct 646 ATTGATAGTGAAGGAGTTATATGTGGAGCTAACTTT-AAAGTTGATGCTTGTTCAAAGAT 704
Query 771 CAATAGTATCCCTAGAAGAGGAAGTGAAGCTAACTGGGCGCTGGCTAATTC 821
|||||| || || |||||||||||||||||||| ||| | || || |||||
Sbjct 705 CAATAGCATTCCAAGAAGAGGAAGTGAAGCTAATTGGTCTCTAGCGAATTC 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5