BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15460.1
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929350 jgi|Araly1|929350|scaffold_301807.1 1639 0.0
Ahg474417 jgi|Araly1|474417|fgenesh2_kg.1__4371__AT1G52930.1 972 0.0
> Ahg929350 jgi|Araly1|929350|scaffold_301807.1
Length=995
Score = 1639 bits (887), Expect = 0.0
Identities = 964/999 (96%), Gaps = 13/999 (1%)
Strand=Plus/Plus
Query 46 GTTGTTTCTTCTTCAATAGACACAAAAAATGGGGAGGAAGAGAAAGCACAGCGAGACTGT 105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTGTTTCTTCTTCAATAGACA-AAAAAATGGGGAGGAAGAGAAAGCACAGCGAGACTGT 59
Query 106 TACGGCGGCACCGGTG-A--AG---GATTCTGCTCCGGAGAGACCTCAAAGGACTCTTTT 159
| |||||||||||| | | || ||||||||||||||||||||| |||||||||||||
Sbjct 60 TGCGGCGGCACCGGCGAAGCAGAACGATTCTGCTCCGGAGAGACCTAAAAGGACTCTTTT 119
Query 160 GGGTTGGAAAGATAAGAAGGAAGATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATT 219
|||||||||||||||||| |||||||||||| |||||||| | | || ||||||||||
Sbjct 120 GGGTTGGAAAGATAAGAACGAAGATGCTGAGGACTCTAAA-C--C-TA--CGTCTGTATT 173
Query 220 CAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGGTATCGACA 279
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct 174 CAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGCATCAGTTTCAGGTATCGGCA 233
Query 280 TTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTAGAAGC 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 234 TTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTGGAAGC 293
Query 340 TAAGAGCAGTAGAGGTGCCACTCTTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTG 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 294 TAAGAGCAGTAGAGGTGCCACTCTTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCTTG 353
Query 400 TTTGTTTTTCGAGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGG 459
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 354 TTTGTTTTTCGAGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTCAAGTCCCCTGG 413
Query 460 TGGACCTTCCGTTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCAC 519
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGGTCCTTCCGTTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCAC 473
Query 520 TGGAAATCATCTGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAACGA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 TGGAAATCATCTGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAAAGA 533
Query 580 TGCACACTGGAAACTTCTGAAAGAGATGTTAACTCAGATTTTTGGAATTCCCGAGGGACA 639
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGCACACTGGAAACTTCTTAAAGAGATGTTAACTCAGATTTTTGGAATTCCCGAGGGACA 593
Query 640 TAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATAT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATAT 653
Query 700 ATGGTTCCGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGG 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTGGTTCCGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGG 713
Query 760 CGATCTGGATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAA 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CGATCTGGATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAA 773
Query 820 GATATTTGGAGGCAGCTTTGGAGGTACAACGCTTTACGAGAACCCATTCTATGTATCTCC 879
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 774 GATATTTGGAGGCAGCTTTGGAGGTCCAACGCTTTACGAGAACCCATTCTATGTATCTCC 833
Query 880 AAACCAGATTCGAGCTTTGGagaaaagaaataaagctgggaaatttgctaagaaaataaa 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 834 AAACCAGATTCGAGCTTTGGAGAAAAGAAATAAAGCTGGGAAATTTGCTAAGAAAATCAA 893
Query 940 ggcaaaaacaagaagaaagaTGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTAC 999
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGCGAAAACAAGAAGAAAAATGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTAC 953
Query 1000 AGACATGTGGAACGATGAATGATAAAAGTCGACCAAAGT 1038
|||||||||||| |||||||||||||| |||||| ||||
Sbjct 954 AGACATGTGGAAGGATGAATGATAAAATTCGACCGAAGT 992
> Ahg474417 jgi|Araly1|474417|fgenesh2_kg.1__4371__AT1G52930.1
Length=1076
Score = 972 bits (526), Expect = 0.0
Identities = 832/976 (85%), Gaps = 35/976 (4%)
Strand=Plus/Plus
Query 69 AAAAAATGGGGAGGAAGAGAAAGCACAGCGAGACTGTTA-CGGCGGCACCGGT------G 121
|||||||||||| |||| | |||||||| ||||| | | | |||| ||||| |
Sbjct 8 AAAAAATGGGGAAGAAGCGGAAGCACAGTGAGAC-GGAAGCTCCGGCGCCGGTGAAAAAG 66
Query 122 AA-G--GATTCTGCTCCGGAGAGACCTC-AAAGGACTCTT-TTGGGTTGGAAAGATAAGA 176
|| | || ||||||||||||||||| | |||||||| || ||||| ||||||||||||
Sbjct 67 AACGACGAGTCTGCTCCGGAGAGACC-CAAAAGGACT-TTATTGGGATGGAAAGATAAG- 123
Query 177 AG-GAA---GATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATTCAGGAATAAAGAG 232
|| ||| || |||||||| |||||| || || | | |||| ||||||||||||||||
Sbjct 124 AGTGAAGGTGAAGCTGAGAAATCTAAAGCTTTGTCTTCATCTGGATTCAGGAATAAAGAG 183
Query 233 AAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGGTATC-GACATTTGATGTTGAA 291
|||||| | ||||||||||| ||||| || | ||||||||||| || ||||||||||||
Sbjct 184 AAGGTTTTGGTTACTTGTTCTCGTCGAATTAGTTTCAGGTATCGGA-GTTTGATGTTGAA 242
Query 292 CATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTAGAAGCTAAGAGCAGTAG 351
|||||| |||||| | || |||||||||||||||||||| || ||||||||||| || |
Sbjct 243 CATGGTTTCACTTCTGCCACACTGTAAGAAGGATAGTAAAGTTGAAGCTAAGAGTAGCAA 302
Query 352 AGGTGCCACTCTT-AATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCG 410
||| || ||| || |||||||| || ||||||||||| ||| |||||||||||||||||
Sbjct 303 AGGCGCGACT-TTGAATGAGCTTATTGAGCTTAAGGGATCTAATTCCTGTTTGTTTTTCG 361
Query 411 AGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGACCTTCCG 470
|||||||||| || || |||||||||||||||||||| || |||||| |||||| || |
Sbjct 362 AGTGTAGGAAACATAAGGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATCTG 421
Query 471 TTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCACTGGAAATCATC 530
| ||||| |||||||| ||||| ||| | ||||| |||||||||||||||||||||||||
Sbjct 422 TGAAGTTTTTGGTTAAAGCTGTGCACGCGATGGAAGAGCTGAAACTCACTGGAAATCATC 481
Query 531 TGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGA-AAACGATGCACACTGG 589
| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 482 TAAAAGGTTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAA-GATGCGCACTGG 540
Query 590 AAACTTCT-GAAAGAGATG-TTAACTCAGATTTTTGGAATTCCCGAGGGACATAGGAAGT 647
||||| || ||| |||||| ||| ||||| | |||||||||||| ||| ||| ||||| |
Sbjct 541 AAACT-CTTGAAGGAGATGCTTA-CTCAGGTCTTTGGAATTCCCAAGGAACACAGGAAAT 598
Query 648 CTAAACCTTACCATGACCATGTGTTTGT-TTTCTCCATTGTTGATGACCATATATGGTTC 706
|||| ||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||
Sbjct 599 CTAAGCCTTACCATGACCATGTATTTGTCTTT-TCCATTGTTGATGAGCATATATGGTTC 657
Query 707 CGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGGCGATCTG 766
|| ||||||||||| ||||| ||||| || || ||||| || |||||| ||||| |||
Sbjct 658 CGGAATTACCAGATTTCGGTTCCTCACAATGAATCAGATAAAATTGCAAAAGGCGGCCTG 717
Query 767 GATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAAGATATTT 826
||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||||||||
Sbjct 718 GATAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTC 777
Query 827 GGAGGCAGCTTTGGAGGTACAACGCTTTACGAGAACCCATTCTATGTATCTCCAAACCAG 886
|||||||||||||||||| |||| |||||||||||||| || || |||||||||||||||
Sbjct 778 GGAGGCAGCTTTGGAGGTCCAACTCTTTACGAGAACCCGTTATACGTATCTCCAAACCAG 837
Query 887 ATTCGAGCTTTGGagaaaagaaataaagctgggaaatttgctaagaaaataaaggcaaaa 946
|||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 838 ATTCGAGCACTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAG 897
Query 947 acaag-aagaaagaTGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTACAGACAT 1005
|| || || |||||||||||| ||||||||||| |||||||||||||| ||| |||| ||
Sbjct 898 ACTAGGAA-AAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATAT 956
Query 1006 GTGGAACGATGAATGA 1021
|||||| ||||| |||
Sbjct 957 GTGGAAAGATGA-TGA 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45404394147
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5