BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15480.1
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929352 jgi|Araly1|929352|scaffold_301809.1 887 0.0
Ahg474415 jgi|Araly1|474415|fgenesh2_kg.1__4369__AT1G52910.1 488 3e-137
> Ahg929352 jgi|Araly1|929352|scaffold_301809.1
Length=571
Score = 887 bits (480), Expect = 0.0
Identities = 540/570 (95%), Gaps = 0/570 (0%)
Strand=Plus/Plus
Query 102 TGAGCTCTGAGAAAATCCAGCAATGGCTTCGAAGCTTGTAGTGATAATTGTGTTTATCCT 161
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2 TGAGCTCTGAGAAAATCCAGCAATGGCTTCGAAGCTTGTAGTTATAATCGTGTTTATCCT 61
Query 162 CGATCTCATCGCCGTTGGGTTAGCCATTGCCGCCGAGCAGAGAAGAAGTGTCGGCAAGGT 221
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CGATCTCATCGCCGTTGGATTAGCCATTGCCGCCGAGCAGAGAAGAAGTGTCGGCAAGGT 121
Query 222 TGAAACAGACAGAGACAAGCAATATGATTACTGTGTGTATGGTACTGACATTGCTACAAG 281
||||| || ||||| ||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 122 GGAAACGGATAGAGAGAAGCAATTTGAGTACTGTGTTTATGGTACTGACATTGCTACAAG 181
Query 282 TTATGGAGCTGGTGCATTTGTTCTTCTCTTTGTAAGCCAAGTCCTTATTATGGCTGCTAG 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTATGGAGCTGGTGCATTTGTTCTTCTCTTTGTAAGCCAAGTCCTTATTATGGCTGCTAG 241
Query 342 TCGTTGCTTCTGTTGTGGAAAGTCTCTTAACCCTGGCGGTTCAAGAGCTTGTGCCATTAT 401
|||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 242 TCGTTGCTTCTGCTGTGGGAAGTCCCTTAACCCAGGCGGTTCAAGAGCTTGTGCCATTAT 301
Query 402 TCTCTTCCTCATTTGCTGGGTGTTTTTCTTGATCGCTGAGATGTGTTTGCTTGCGGCATC 461
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 302 TCTCTTCCTCATCTGCTGGGTGTTTTTCTTGATCGCTGAGATGTGTTTGCTAGCGGCATC 361
Query 462 AATCAGAAATGCGTACCACACACAGTATAGAAAGATGTGGAAAGTTGAAGATCCACCAAG 521
||||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||
Sbjct 362 AATCAGAAACGCGTACCACACACAGTATAGAAAGTTTTGGGACGTTGAAGATCCACCAAG 421
Query 522 CTGTGAAGTTATAAGGAAAGGAGTTTTTGCAGCTGGTGCTGCATTCACACTCTTCACCGC 581
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTGTGAAGTTATAAGGAAAGGGGTTTTTGCAGCTGGTGCTGCATTCACACTCTTCACCGC 481
Query 582 CATTGTCTCTCAGTTCTACTACGTTTGCTACTCTCGTGCTAGAGATGCGTACCAGAATCC 641
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 482 CATTGTCTCTCAGTTCTACTATGTTTGCTACTCTCGTGCTAGAGATGCTTACCAGAATCA 541
Query 642 CTCCTACTAAAAATGTCAACTTCCACAGCA 671
|||||||| || |||| ||||||||||||
Sbjct 542 TTCCTACTAGAAGTGTCGACTTCCACAGCA 571
> Ahg474415 jgi|Araly1|474415|fgenesh2_kg.1__4369__AT1G52910.1
Length=696
Score = 488 bits (264), Expect = 3e-137
Identities = 441/525 (84%), Gaps = 18/525 (3%)
Strand=Plus/Plus
Query 106 CTCTGAGAA-AATC-CAGCAATGGCTTCGAAGCTTGTAG-TGATAATTGTGTTTATCCTC 162
||||||||| |||| | |||||||||| ||||| || | | || |||||||| || ||
Sbjct 39 CTCTGAGAACAATCTCCTCAATGGCTTCAAAGCTCGT-GATCATCATTGTGTTCATTCTA 97
Query 163 GATCTCATCGCCGTTGGGTTAGCCATTGCCGCCGAGCAGA-GAAGAAGTGTCGGCAAGGT 221
|||||||| || ||||| ||||||||||||||||| || | ||||||||||||| |||||
Sbjct 98 GATCTCATTGCTGTTGGATTAGCCATTGCCGCCGAACA-ACGAAGAAGTGTCGGTAAGGT 156
Query 222 TGAAACAGAC-AGAGACAAGCAATATGATTACTGTGTGTATGG-TACTGACATTGCTACA 279
|| | ||| || || ||| | ||||| || |||| |||||| | ||||||| ||||||
Sbjct 157 TGTTCCGGACAAG-GAGAAGGATTATGAGTATTGTGAGTATGGCT-CTGACATAGCTACA 214
Query 280 AGTTATGGAGCTGGTGCATTTGTTCTTCTCTT-TGTAAGCCAAGTCCTTATTATGGCT-G 337
||||||||||||||||| ||||| |||||||| | || |||||| ||||||||| | |
Sbjct 215 AGTTATGGAGCTGGTGCCTTTGTGCTTCTCTTCACT-AGTCAAGTCATTATTATGG-TGG 272
Query 338 CTAGTCGTTGCTTCTGTTGTGG-AAAGTCTCTTAACCCTGGCGGTTCAAGAGCTTGTGCC 396
|||| || || |||||||| || |||| |||||||||| || ||||||||||||||||||
Sbjct 273 CTAGCCGGTGTTTCTGTTGCGGCAAAG-CTCTTAACCCCGGTGGTTCAAGAGCTTGTGCC 331
Query 397 ATTATTCTCTTCCTCATTTGCTGGGTGTTTTTCTTGATCGCTGAGATGTGTTTGCTTGCG 456
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 332 ATTATGCTCTTCCTCATTTGCTGGGTGTTTTTCTTGATTGCTGAGATATGTTTGCTCGCG 391
Query 457 GCATCAATCAGAAATGCGTACCACAC-ACAGTATAGAAAGATGTGGAAAGTTGAAGATCC 515
| |||||||||||| ||||||||||| | |||| |||| ||||||||| || ||||| ||
Sbjct 392 GGATCAATCAGAAACGCGTACCACACTA-AGTACAGAAGGATGTGGAACGTCGAAGACCC 450
Query 516 ACCAAGCTGTGAAGTTATAAGGAAAGGAGTTTTTGCAGCTGGTGCTGCATTCACACTCTT 575
|||||||||||||| || | |||||||| ||||| ||||||||| | || | |||||
Sbjct 451 TCCAAGCTGTGAAGTGATCCGTAAAGGAGTGTTTGCTGCTGGTGCTTCCTTTGCTCTCTT 510
Query 576 CACCGCCATTGTCTCTCAGTTCTACTACGTTTGCTACTCTCGTGC 620
||| || ||||||||||||||||| ||||| | ||| ||||||||
Sbjct 511 CACTGCTATTGTCTCTCAGTTCTATTACGTCTCCTATTCTCGTGC 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5