BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15490.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318329 jgi|Araly1|318329|fgenesh1_pm.C_scaffold_3001345 761 0.0
> Ahg318329 jgi|Araly1|318329|fgenesh1_pm.C_scaffold_3001345
Length=816
Score = 761 bits (412), Expect = 0.0
Identities = 516/566 (91%), Gaps = 7/566 (1%)
Strand=Plus/Plus
Query 734 GCGAAGCAATTCTATGAAGATGAGAGAAGGTTATCGGCATATGATCAGGTTGAGCTCTTC 793
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 256 GCGAAGCAATTCTATGAAGATGAGAGAAGGTTATCGGCATACGATCAGGTCGAGCTCTTC 315
Query 794 TGCACAACCATCTTGCAGAATATATCTTCTTTGAAATATGAAAACAATGTTGATCTGTTA 853
|||||| ||||||||||||||||||||||||||||| |||||| | ||||| || |||||
Sbjct 316 TGCACATCCATCTTGCAGAATATATCTTCTTTGAAACATGAAAGCGATGTTAATTTGTTA 375
Query 854 CCGGAAGAAACTAAAAAAGCAATGGCCGGAATTATATTTGCTGCATCAAGAATTGGCGAG 913
| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 376 CTGGAAGAAACTAAAGAAGCAATGGCCGGAATGATATTTGCTGCATCAAGAATTGGCGAG 435
Query 914 CTTGAGGATCTTCAACACATAAGGAGCTTCTTCGTTCAAAGATTTGGGCTTAAGTTTGAT 973
||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 436 CTTGAGGATCTTCAACACATAAGGAGCTTGTTCGTCCAAAGATTTGGGCTTCAGTTTGAC 495
Query 974 AAAGAGTGTGTAGATTTGCGCCAAGGAAACGTCGTGGGTTTTGAGATAGTCAAGATTCTA 1033
||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 496 AAAGACTGTGTAAATTTGCGCCAAGGAAACGTCGTGGGTTCTGAGATAGTCAAGATTCTA 555
Query 1034 AACACGAA-TATGCGGGGAGATGAAATTACACATATTGTAAGGGAACTTTCTCATAAGTA 1092
|||| || | ||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 556 GACAC-AAGTGTGCGGAAAGATGAAATTACACATATTGTAATGGAACTTTCTCAAAAGTA 614
Query 1093 CAAAACCAACATCACTACTTCTACGGATTCAATAAGTGAAGATTTGGCTTCAAGTGACGA 1152
| ||||||||||| |||||||| ||||||| |||||| |||||| ||||||||||||||
Sbjct 615 CCAAACCAACATCGCTACTTCTGCGGATTCGATAAGTAAAGATTCAGCTTCAAGTGACGA 674
Query 1153 TCTCGGCATTGCCGATTCTGATGCGATGAAGGTTGAGAAAATGAAAAGGGCTCTTCGGAG 1212
||| |||||| ||||| |||||| ||||||||| |||||||||||||||| | | ||||
Sbjct 675 TCTTGGCATTTCCGATCCTGATGTGATGAAGGTAGAGAAAATGAAAAGGG-T-TA-GGAG 731
Query 1213 AAAGAAAGTTATGAAGGAGAATTCTAAGTTTTTGCATCCAAATCTTAGAGAGTCTCAGGG 1272
|||| ||||| |||||||||||||||||||| |||||||||||||| |||||| ||| ||
Sbjct 732 AAAGGAAGTTGTGAAGGAGAATTCTAAGTTTATGCATCCAAATCTTGGAGAGTTTCAAGG 791
Query 1273 AAGAGATCGATCATTCA-GAAGATAA 1297
||||||||||||||||| || |||||
Sbjct 792 AAGAGATCGATCATTCATGA-GATAA 816
Score = 106 bits (57), Expect = 5e-22
Identities = 85/98 (87%), Gaps = 3/98 (3%)
Strand=Plus/Plus
Query 414 ATGTTTGCCAAGAAACCAGAATCAAAGTTTGGGTGCTTTTTTAACATATTTGGTGTTCTT 473
|||| |||||||||| || |||||||||||||||||||| |||| | ||||||| ||
Sbjct 1 ATGTGTGCCAAGAAAACAAAATCAAAGTTTGGGTGCTTTAGTAACGTCTTTGGTGATC-- 58
Query 474 CGGTCTCGTTCTTCAAGATGGCGAAAAGCTTCGAAGTG 511
| ||||||||||||||||||||||||||||| |||||
Sbjct 59 -GATCTCGTTCTTCAAGATGGCGAAAAGCTTCAAAGTG 95
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5