BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15500.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478996 jgi|Araly1|478996|fgenesh2_kg.3__1697__AT3G15500.1 1906 0.0
Ahg474413 jgi|Araly1|474413|fgenesh2_kg.1__4367__AT1G52890.1 665 0.0
Ahg940372 jgi|Araly1|940372|scaffold_600916.1 87.9 2e-16
> Ahg478996 jgi|Araly1|478996|fgenesh2_kg.3__1697__AT3G15500.1
Length=1248
Score = 1906 bits (1032), Expect = 0.0
Identities = 1179/1249 (94%), Gaps = 13/1249 (1%)
Strand=Plus/Plus
Query 2 AAATCTTTAATCTCAGAATAC-AAAAA-AGAA-AA--TCAAAGAAGATAGTTTTGTGATT 56
||||||||||||||| ||||| ||||| | || || | |||||||||||| ||||||||
Sbjct 1 AAATCTTTAATCTCAAAATACAAAAAATAAAAGAATTTTAAAGAAGATAGTGTTGTGATT 60
Query 57 GTTTTCTATAAAAAGTGCAGATATTTTCTTTGTCCTAGAGAAAGAGGTGATAGGAAAAAT 116
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 61 GTTTTCTATAAAAAGTGCAGATATTTTCTTTGTCCTAGACAAAGAGGTGATAAGAAAAAT 120
Query 117 GGGTCTCCAAGAGCTTGACCCGTTAGCCCAATTGAGCTTACCGCCGGGTTTTCGGTTTTA 176
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 121 GGGTCTCCAAGAGCTTGACCCCTTAGCCCAATTGAGCTTACCACCGGGTTTTCGATTTTA 180
Query 177 TCCGACTGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGTCACGACTT 236
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CCCGACGGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGTCATGACTT 240
Query 237 CTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTTTTACCAAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTTTTACCAAG 300
Query 297 TAAGGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCGAGGGATAGGAAGTATCC 356
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 TAAAGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCAAGGGATAGGAAGTATCC 360
Query 357 AAACGGGTCAAGACCTAATCGGGTTGCCGGGTCGGGTTATTGGAAAGCCACCGGTACGGA 416
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GAACGGGTCGAGACCTAATCGGGTTGCCGGATCGGGTTATTGGAAAGCCACCGGTACGGA 420
Query 417 TAAAGTTATCTCGACGGAGGGAAGAAGAGTTGGTATCAAGAAAGCTTTGGTGTTTTACAT 476
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 421 TAAAGTTATCTCGACGGAGGGAAGAAGAGTTGGTATCAAGAAAGCATTAGTGTTTTACAT 480
Query 477 TGGAAAAGCTCCAAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTCATCGA 536
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGAAAAGCACCGAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTCATCGA 540
Query 537 ACCCTCTCGTCGAAATGGAAGCACCAAGCTTGATGATTGGGTTTTATGTCGAATATACAA 596
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACCCTCTCGTAGAAATGGAAGCACCAAGCTTGATGATTGGGTTTTATGTCGAATATACAA 600
Query 597 AAAGCAAACAAGCGCACAAAAACAAGCTTACAATAATCTAATGACGAGTGGTCGTGAATA 656
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 AAAGCAATCAAGCGCACAAAAACAGGCTTACAATAATCTAATGACGAGTGGTCGTGAATA 660
Query 657 CAGCAACAATGGTTCGTCGACATCTTCTTCGTCTCATCAATACGACGACGTTCTCGAGTC 716
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 661 CAGCAACAATGGTTCGTCGACATCTTCTTCCTCTCATCAATACGACGACGTGCTCGAGTC 720
Query 717 GTTGCATGAGATTGACAACAGAAGTTTGGGGTTTGCCGCCGGTTCATCAAACGCGCTGCC 776
|||||||| || ||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 721 TTTGCATGAAATAGACAACAGAAGTTTGGGATTCGCCGCCGGTTCATCAAACTCGCTGCC 780
Query 777 TCATAGTCATAGACCGGTTTTAACCAATCATAAAACCGGGTTTCAGGGTTTAGCCAGGGA 836
|| ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 781 TCGTAGTCATAGACCGGTTTTAACCAATCAGAAAACCGGGTTTCACGGTTTAGCTAGGGA 840
Query 837 GCCAAGTTTTGATTGGGCGAATTTGATTGGACAGAACTCGGTCCCGGAACTCGGACTGAG 896
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 841 GCCAAGTTTTGATTGGGCGAATTTGGTTGGACAGAACTCGGTCCCGGAACTCGGACTGAG 900
Query 897 TCATAACGTTCCGAGTATTCGTTACGGTGACGGTGGAACGCAGCAACAAACTGAGGGGAT 956
||| |||||||||||| | |||||||||||||||||||||||||| || | ||||||||
Sbjct 901 TCAAAACGTTCCGAGTCTCCGTTACGGTGACGGTGGAACGCAGCAGCAGGCAGAGGGGAT 960
Query 957 TCCTCGGTTTAATAATAACTCGGACGTCTCGGCTAATCAGGGTTTTAGTGTTGACCCGGT 1016
||||||||||||| ||||||||||||| | |||| |||| |||||||||||||| |||||
Sbjct 961 TCCTCGGTTTAATTATAACTCGGACGTGTTGGCTCATCATGGTTTTAGTGTTGATCCGGT 1020
Query 1017 TAACGGATTTGGGTACTCGGGTCAACAATCTAGTGGGTTCGGGTTTATTTGATTGTGTAA 1076
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1021 TAACGGATTTGGGTACTCGGGTCAACAATCTAGTGGTTTCGGGTTTATTTGATTGTGTAA 1080
Query 1077 TGGTAACGTAATAAGAAAAACATAtttttattttttGTCCGTGTCAGATTAGTTAATTAA 1136
|||| |||||||||| |||||||| |||||||||| ||||| ||||||||| ||||||||
Sbjct 1081 TGGTGACGTAATAAGCAAAACATAATTTTATTTTT-GTCCGAGTCAGATTAATTAATTAA 1139
Query 1137 TATAGCGTAGAATTCGAACTCTAGGGTTAGATTTAGGTTCTACGACTTGTATT----GTA 1192
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 TATAGTGTAGAATTCGAACTCTAGGGTTAGATTTAGGTTCTACGACTTGTATTAATTGTA 1199
Query 1193 -TAT-T-CGTCGTCATTTGTCCTGACATTTACATTTTTGTAAACTTTTA 1238
||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTATATTCGTCGTCATTTGTCCTGACATTTACATTTTTGTAAACTTTTA 1248
> Ahg474413 jgi|Araly1|474413|fgenesh2_kg.1__4367__AT1G52890.1
Length=1232
Score = 665 bits (360), Expect = 0.0
Identities = 548/638 (86%), Gaps = 16/638 (3%)
Strand=Plus/Plus
Query 111 AAAAATGGGTCTCCAAG-AGCTTGACCCGTTAGCCCAATTGAGCTTACCGCCGGGTTTTC 169
|||||||||| |||||| | | ||||||||||||||| ||||||||||| || ||||| |
Sbjct 36 AAAAATGGGTATCCAAGAAAC-TGACCCGTTAGCCCAGTTGAGCTTACCACCAGGTTTCC 94
Query 170 GGTTTTATCCGACTGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGTC 229
| ||||| ||||| || |||||||| |||||| ||||||| || |||||||| || |||
Sbjct 95 GATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCTATGCAGAAAAGCAGCTGGTT 154
Query 230 ACGACTTCTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTTT 289
|||| ||| |||| |||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 155 ACGATTTCCCTCTTCAGCTCATCGCCGAAATCGATCTTTACAAGTTTGATCCATGGGTTT 214
Query 290 TACCAAGTAAGGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCGAGGGATAGGA 349
|||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||||| |
Sbjct 215 TACCAAATAAGGCATTATTTGGAGAAAAAGAATGGTATTTTTTCAGTCCGAGGGATAGAA 274
Query 350 AGTATCCAAACGGGTCAAGACCTAATCGGGTTGCCGGGTCGGGTTATTGGAAAGCCACCG 409
| || ||||||||||||||||| ||||||||||||||||||||||| ||||| || || |
Sbjct 275 AATACCCAAACGGGTCAAGACCGAATCGGGTTGCCGGGTCGGGTTACTGGAAGGCTACGG 334
Query 410 GTACGGATAAAGTTATCTCGACGGAGGGA-AGAAGAGTTGGTATCAAGAAAGCTTTGGTG 468
||||||||||| | || |||||||| ||| | |||||||||||| || ||||||||||||
Sbjct 335 GTACGGATAAAATAATATCGACGGAAGGACA-AAGAGTTGGTATTAAAAAAGCTTTGGTG 393
Query 469 TTTTACATTGGAAAAGCTCCAAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGT 528
|||||||| ||||||||||| ||||| || |||||||||||||| ||||||||||| |||
Sbjct 394 TTTTACATCGGAAAAGCTCCTAAAGGTACAAAAACCAATTGGATCATGCATGAGTATCGT 453
Query 529 CTCATCGAACCCTCTCGTCGAAATGGAAGCACCAAGCTTG-ATGATTGGGTTTTATGTCG 587
||||| |||||||||||| |||| |||||||| ||| ||| ||||||||||| |||||||
Sbjct 454 CTCATTGAACCCTCTCGTAGAAACGGAAGCACAAAG-TTGGATGATTGGGTTCTATGTCG 512
Query 588 AATATACAAAAAGCAAACAAGCGCACAAAAACAAGCTTAC-AATAATCTAATGACGAGTG 646
|||||||||||||||| |||||||||||||||||| |||| || ||| |||| |||||||
Sbjct 513 AATATACAAAAAGCAATCAAGCGCACAAAAACAAGTTTACGAA-AATGTAATCACGAGTG 571
Query 647 GTCGTGAATACAGCAACAATGGT--T-CGTCGACATCTTCTTCGTCT-CATCAATACGAC 702
| | |||| ||||||||||||| | |||| ||| | || || ||| | ||| | ||
Sbjct 572 CTAGAGAATTCAGCAACAATGGTACTTCGTCAACAACGTCGTCTTCTTC-TCACTTTGAA 630
Query 703 GACGTTCTCGAGTCGTTGCAT---GAGATTGACAACAG 737
|||||||| || ||||| ||| ||||| ||||||||
Sbjct 631 GACGTTCTTGATTCGTTTCATCATGAGATCGACAACAG 668
> Ahg940372 jgi|Araly1|940372|scaffold_600916.1
Length=892
Score = 87.9 bits (47), Expect = 2e-16
Identities = 172/230 (75%), Gaps = 17/230 (7%)
Strand=Plus/Plus
Query 309 CGGTGAAAAAGAATGGTA-TT-TTTTCAGCCCGAGGGATAGGAAGTATCCAAACGGGTCA 366
||| || ||||| ||||| || || ||| || || ||| |||| || || ||||| ||
Sbjct 194 CGGAGAGAAAGAGTGGTACTTCTTCTCA--CCTAGAGATCGGAAATACCCTAACGGTTCG 251
Query 367 AGACCTAATCGGGTTGCCGGGTCGGGTTATTGGAAAGCCACCGGTA-CGGATAAAGTTAT 425
| || || |||| || || | |||||||||||||| ||||| | | |||||| |||
Sbjct 252 CGTCCAAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGG-AGCAGATAAACCTAT 310
Query 426 CTCGACGGAGGGAA--GAAGA-GTT-GGTATCAAGAAAGCTTTGGTGTTTTACATTGGAA 481
| | | | || ||||| ||| |||||||||||||| | || || ||| ||| |
Sbjct 311 -T-G--GTA---AACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCTGGGA 363
Query 482 AAGCTCCAAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTC 531
||||||||||||| | || ||||||||||| ||||||||||| ||||||
Sbjct 364 AAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTC 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5