BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15518.1
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478998 jgi|Araly1|478998|fgenesh2_kg.3__1699__AT3G15518.1 881 0.0
> Ahg478998 jgi|Araly1|478998|fgenesh2_kg.3__1699__AT3G15518.1
Length=596
Score = 881 bits (477), Expect = 0.0
Identities = 562/602 (93%), Gaps = 9/602 (1%)
Strand=Plus/Plus
Query 1 GTGTTTCTTTAATATAGAGAAAGAAGACTCCCTTGA--CTCTCTCTCACAGCTAGTTTAT 58
||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct 1 GTGTTTCTTTAATATAGAG-AAGAAGACTCCCTTGACTCTCTCTCTCACAGCCAGTTTAT 59
Query 59 AAAGAAACGTTTCTTGCAAAATTCTTAGCAAGAGATACACGTCAGTTACTTATGCAGGTT 118
|||||||||||||||||||||||| |||||||||| | | | |||||||||||||||||
Sbjct 60 AAAGAAACGTTTCTTGCAAAATTCCTAGCAAGAGAGATA--TTAGTTACTTATGCAGGTT 117
Query 119 TCGAGAAGGATCCCATCTGGTGAAGGCGTAGAGATGCCAGGAAGATCCGAGACCAACCGG 178
|||||||||||||||| || ||||||||||||||||| |||||||| ||||| || |||
Sbjct 118 GCGAGAAGGATCCCATCAGGAGAAGGCGTAGAGATGCCGGGAAGATCAGAGACGAATCGG 177
Query 179 ATCAGACGGAGGAGCCACGGGTCAGGTCTGAGGGTTCGGGTAGCTTGCACTTGCTCAGGA 238
||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 178 GTCAGACGAAGAAGCCATGGGTCAGGTCTGAGGGTTCGAGTAGCTTGCACGTGCTCAGGA 237
Query 239 CGGCCTGGTTCAACGAAGTGTGCACGGCACGGGTTTGTGGTGCCAAGCGATGAGAGGCTT 298
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 CGGCCTGGTTCGACGAAGTGTGCACGGCACGGGTTTATGGTGCCAAGCGATGAGAGGCTT 297
Query 299 ATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGCGAAGAGCTTTGACACCTCCGATC 358
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 298 ATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGAGGAGAGCTTTGACACCTCCGATC 357
Query 359 CGGCGGATGAATCTCCGGTGGTTAAATTTCCGGCCAACACCTAGCCGTCTCTGTAAAATG 418
||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 358 CGGCGGATGAATCTCCGGTGGTTGAATTTCAGGCCAACACCTAGCCGACTCTGTAAAATG 417
Query 419 TCTTCTGTTTGATCATGAAACTGGGACTCAAAAAATCAAGGCTGAGAACTTTTTGGTT-G 477
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 418 TCTTCTGTTTGATCATAAAACTGGGACTCAAAAA-TCAAGGCTGAGAACTTTTTTGTTTG 476
Query 478 AATGTAAATAGAGCTCAAAGCTTTTCTTTTTCTTGTAATGTTGGAAATCCAATAAGAATC 537
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 AATGTAAATAGAATTCAAAGCTTTTCTTTTTCTTGTATTGTTGGAAATCCAATAAGAATC 536
Query 538 ATACCCAATTGCAGAGAGTTGAAACTCTTAGCACTCTGTTTATGGACAAGAAAGTCTTAG 597
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 537 AGACCCAATTGCAGAGAGTTGAAACT-T-AGCACTCTGTTTATGGACAAGAAAGTCTTAG 594
Query 598 AA 599
||
Sbjct 595 AA 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559962706
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5