BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15518.1 Length=643 Score E Sequences producing significant alignments: (Bits) Value Ahg478998 jgi|Araly1|478998|fgenesh2_kg.3__1699__AT3G15518.1 881 0.0 > Ahg478998 jgi|Araly1|478998|fgenesh2_kg.3__1699__AT3G15518.1 Length=596 Score = 881 bits (477), Expect = 0.0 Identities = 562/602 (93%), Gaps = 9/602 (1%) Strand=Plus/Plus Query 1 GTGTTTCTTTAATATAGAGAAAGAAGACTCCCTTGA--CTCTCTCTCACAGCTAGTTTAT 58 ||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| Sbjct 1 GTGTTTCTTTAATATAGAG-AAGAAGACTCCCTTGACTCTCTCTCTCACAGCCAGTTTAT 59 Query 59 AAAGAAACGTTTCTTGCAAAATTCTTAGCAAGAGATACACGTCAGTTACTTATGCAGGTT 118 |||||||||||||||||||||||| |||||||||| | | | ||||||||||||||||| Sbjct 60 AAAGAAACGTTTCTTGCAAAATTCCTAGCAAGAGAGATA--TTAGTTACTTATGCAGGTT 117 Query 119 TCGAGAAGGATCCCATCTGGTGAAGGCGTAGAGATGCCAGGAAGATCCGAGACCAACCGG 178 |||||||||||||||| || ||||||||||||||||| |||||||| ||||| || ||| Sbjct 118 GCGAGAAGGATCCCATCAGGAGAAGGCGTAGAGATGCCGGGAAGATCAGAGACGAATCGG 177 Query 179 ATCAGACGGAGGAGCCACGGGTCAGGTCTGAGGGTTCGGGTAGCTTGCACTTGCTCAGGA 238 ||||||| || ||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct 178 GTCAGACGAAGAAGCCATGGGTCAGGTCTGAGGGTTCGAGTAGCTTGCACGTGCTCAGGA 237 Query 239 CGGCCTGGTTCAACGAAGTGTGCACGGCACGGGTTTGTGGTGCCAAGCGATGAGAGGCTT 298 ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 238 CGGCCTGGTTCGACGAAGTGTGCACGGCACGGGTTTATGGTGCCAAGCGATGAGAGGCTT 297 Query 299 ATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGCGAAGAGCTTTGACACCTCCGATC 358 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 298 ATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGAGGAGAGCTTTGACACCTCCGATC 357 Query 359 CGGCGGATGAATCTCCGGTGGTTAAATTTCCGGCCAACACCTAGCCGTCTCTGTAAAATG 418 ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| Sbjct 358 CGGCGGATGAATCTCCGGTGGTTGAATTTCAGGCCAACACCTAGCCGACTCTGTAAAATG 417 Query 419 TCTTCTGTTTGATCATGAAACTGGGACTCAAAAAATCAAGGCTGAGAACTTTTTGGTT-G 477 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| | Sbjct 418 TCTTCTGTTTGATCATAAAACTGGGACTCAAAAA-TCAAGGCTGAGAACTTTTTTGTTTG 476 Query 478 AATGTAAATAGAGCTCAAAGCTTTTCTTTTTCTTGTAATGTTGGAAATCCAATAAGAATC 537 |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 477 AATGTAAATAGAATTCAAAGCTTTTCTTTTTCTTGTATTGTTGGAAATCCAATAAGAATC 536 Query 538 ATACCCAATTGCAGAGAGTTGAAACTCTTAGCACTCTGTTTATGGACAAGAAAGTCTTAG 597 | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 537 AGACCCAATTGCAGAGAGTTGAAACT-T-AGCACTCTGTTTATGGACAAGAAAGTCTTAG 594 Query 598 AA 599 || Sbjct 595 AA 596 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23559962706 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5