BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15520.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929358 jgi|Araly1|929358|scaffold_301815.1 2165 0.0
Ahg478998 jgi|Araly1|478998|fgenesh2_kg.3__1699__AT3G15518.1 176 4e-43
> Ahg929358 jgi|Araly1|929358|scaffold_301815.1
Length=1432
Score = 2165 bits (1172), Expect = 0.0
Identities = 1346/1429 (94%), Gaps = 15/1429 (1%)
Strand=Plus/Plus
Query 55 AACTTGCAAGCTTCCCATCAATGGCTTCTCCTTTGTCTTCTTCCACCGTCGTCTCTCACC 114
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACTTGCAAGCTTCACATCAATGGCTTCTCCTTTGTCTTCTTCCACCGTCGTCTCTCACC 60
Query 115 GCCttttttttCTCCATCCTTCACCTCTCAATCGCAAATTCCTCTTCGTAAAACCCAAAT 174
| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GGATTTTCTTTCTCCACCCTTCACCTCTCAATCGTAAATTCCTCTTCGTAAAACCCAAAT 120
Query 175 TACCCTTTAATCGAACCAATTCCGGAGATTTCCGCATGCGTCTGCATTCTACATCCAGTA 234
||||||||||||||||||||||||||||||||||||||| ||| ||| | ||
Sbjct 121 TACCCTTTAATCGAACCAATTCCGGAGATTTCCGCATGC-AATGC--TCT--A---AG-- 170
Query 235 AAACTGGCACTAAGGAACTTATACATTCCTGCAATTCTTCAATTGATTCGAAGTTGAACA 294
| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 171 --ATTGGCACCAAGGAACATATACATTCCTGCAATTCTTCAATTGATTCAAAGTTGAACC 228
Query 295 CTTTTGAAGCTGGATCTAAAAACCTCGAGAAATTGGTTGCAACGATATTGATATTTGTTC 354
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CTTTTGAAGATGGATTTAAAAACCTCGAGAAATTGGTTGCAACGATATTGATATTTGTTC 288
Query 355 AAGTATGGTCTCCATTGCCCTTGTTTGGTCTAGACTCTGCTTACATTTCACCTGCAGAGG 414
|||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 289 AAGTTTGGTCTCCATTGCCCTTGCTTGGTCTAGACGCTGCTTACATTTCACCTGCAGAGG 348
Query 415 CAGTTCTTTACTCTCCGGACACTAAAGTTCCAAGAACTGGAGAACTTGCTCTAAGAAGGG 474
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 349 CAGTTCTTTACTCTCCGGACACGAAAGTTCCAAGAACTGGCGAACTTGCTCTAAGGAGGG 408
Query 475 CTATACCTGCTAATCCAAGCATGAAGATAATACAGGCTTCGTTGGAAGATATATCATATC 534
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 409 CTATTCCTGCTAATCCAAGCATGAAGATAATACAGGCTTCATTGGAAGATATATCATATC 468
Query 535 TTCTCAGAATTCCTCAAAGGAAGCCTTACGGTACCATGGAGAGCAATGTAAAGAAAGCTT 594
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 469 TTCTCAGAATTCCTCAAAGAAAGCCTTATGGTACCATGGAGAGCAATGTAAAGAAAGCTC 528
Query 595 TAAAGGTGGCTATAGATGATAAGGATAAGATCTTGGCTAGTATACCAGTAGACTTAAAAG 654
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct 529 TAAAGGTGGCTATAGACGATAAGGATAAGATATTGGCTAGTATACCAGCAGACTTAAAAG 588
Query 655 ACAAGGGCTCAGAACTGTATACAACTCTGATTGATGGAAAGGGTGGACTACAAGCACTTA 714
|||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||
Sbjct 589 ACAAGGGCTCAGAACTGTATGCAACTCTGATTGATGGCAAGGGTGGCCTTCAAGCACTTA 648
Query 715 TAACGTCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGGCTGGCAGCATCACTAG 774
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 649 TAACATCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGCCTGGCAGCATCACTAG 708
Query 775 ATACTGTTGCGGATCTGGAGTTATTACAGGCATCTGGGTTGTCATTTCTACTTCCTCAGC 834
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 709 ATACTGTTGCGGATCTGGAGTTATTACAGGCATCTGGGTTGTCATTTTTACTTCCTCAGC 768
Query 835 AGTACTTAAACTATCCCAGGTTAGCAGGAAGAGGAACTGTGGAAATCACCATTGAGAAAG 894
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AATACTTAAACTATCCCAGGTTAGCAGGAAGAGGAACTGTGGAAATCACCATTGAGAAAG 828
Query 895 CTGATGGTTCGACTTTTTCAGCTGAAGCTGGAGGTGATCAAAGAAAGAGTGCTACAGTAC 954
||||||||| || |||||||||| |||||| |||||||||||||||||||||||| | |
Sbjct 829 GTGATGGTTCAACATTTTCAGCTGCAGCTGGGGGTGATCAAAGAAAGAGTGCTACAATCC 888
Query 955 AGATCGTTATAGATGGATATTCAGCACCTCTAACCGCAGGGAATTTTGCAAAACTGGTAA 1014
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 889 AGATCGTTATAGATGGATATTCAGCACCTCTAACAGCAGGGAATTTTGCAAAACTGGTAA 948
Query 1015 CTAGCGGTGCATATGATGGAGCCAAACTCAATACTGTAAACCAGGCTGTTATCACAGAGG 1074
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 949 CTAGCGGTGCATATGATGGAGCCAAACTCAATACAGTGAACCAGGCTGTTATCACAGAGG 1008
Query 1075 ATGGGAGTGGTAAGGTGGAGAGTGTTAGTGTTCCATTGGAAGTAATGCCTTCTGGACAAT 1134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1009 ATGGGAGTGGTAAGGTGGAGAGTGTTAGTGTTCCATTGGAAGTAATGCCTTCTGGACAGT 1068
Query 1135 TCGAACCTCTCTACAGAACGCCATTGAGTGTCCAGGATGGGGAGTTACCAGTGCTTCCTT 1194
|||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1069 TCGAACCTCTCTACCGAACCCCATTGAGTGTCCAGGATGGGGAGTTACCAGTTCTTCCTT 1128
Query 1195 TATCGGTTTATGGAGCTGTAGCAATGGCGCACAGCGAAAACTCAGAAGAATACTCTTCTC 1254
||||||||||||||||||| |||||||||||||| |||| |||||| |||||||||||||
Sbjct 1129 TATCGGTTTATGGAGCTGTTGCAATGGCGCACAGTGAAACCTCAGATGAATACTCTTCTC 1188
Query 1255 CTTACCAATTCTTCTTCTACCTATACGATAAAAGAAACTCTGGCTTAGGAGGATTATCCT 1314
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1189 CTTACCAATTCTTCTTCTACCTATACGATAAAAGAAATTCTGGCTTGGGAGGTTTATCCT 1248
Query 1315 TTGACGAAGGACAGTTCTCGGTCTTCGGATACACAATAGCAGGAAAAGATATTCTCGGGC 1374
|||||||||| ||||||||||| || |||||||||| |||||||||||||||||| ||||
Sbjct 1249 TTGACGAAGGGCAGTTCTCGGTTTTTGGATACACAACAGCAGGAAAAGATATTCTTGGGC 1308
Query 1375 AGATCAAGACTGGAGATATCATCAAATCTGCAAAACTAATTGAAGGCCAAGACCGCCTTA 1434
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1309 AGATCAAGACTGGAGATATCATCAAATCTGCAAAACTAATTGAAGGCCAAGATCGCCTTA 1368
Query 1435 GTTTGCCTGTTCAAAACAAC-A-A-CATCAACGAATCCACTTGATTCTT 1480
|||||||| |||||||||| | | ||||||| |||||||||||||||
Sbjct 1369 TTTTGCCTGCTCAAAACAACTACAACATCAACTCATCCACTTGATTCTT 1417
> Ahg478998 jgi|Araly1|478998|fgenesh2_kg.3__1699__AT3G15518.1
Length=596
Score = 176 bits (95), Expect = 4e-43
Identities = 104/108 (96%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 1504 TTCTAAGACTTTCTTGTCCATAAACAGAGTGCTAAGAGTTTCAACTCTCTGCAATTGGGT 1563
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 596 TTCTAAGACTTTCTTGTCCATAAACAGAGTGCT-A-AGTTTCAACTCTCTGCAATTGGGT 539
Query 1564 ATGATTCTTATTGGATTTCCAACATTACAAGAAAAAGAAAAGCTTTGA 1611
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 CTGATTCTTATTGGATTTCCAACAATACAAGAAAAAGAAAAGCTTTGA 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5