BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15530.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479001 jgi|Araly1|479001|fgenesh2_kg.3__1702__AT3G15530.1 1999 0.0
> Ahg479001 jgi|Araly1|479001|fgenesh2_kg.3__1702__AT3G15530.1
Length=1372
Score = 1999 bits (1082), Expect = 0.0
Identities = 1245/1321 (94%), Gaps = 21/1321 (2%)
Strand=Plus/Plus
Query 188 TTGAGATCTGTTTTTGTTTCTAGAAGAAAACAGCTTGTTTTCACCGTCTCTGATCCTC-T 246
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 59 TTGAGATCTGTTCTTGTTTCTAGAAGAAAACAGCTTGTTTTCACCGTCTCTGATCCTCTT 118
Query 247 GATTTGATCGGAATC-----T--AATGGGTAAAACCACCGGGAACAGAGATTGGACTCAG 299
||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||
Sbjct 119 GATTTGATCGGAATCTGGAATCAAATGGGTAAAACCGCCGGAAACAGAGATTGGACTCAG 178
Query 300 ATCTACGCTATTTACGGAATCGAACAATGGCAGACACTCGtcttccttctcttccatgct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATCTACGCTATTTACGGAATCGAACAATGGCAGACACTCGTCTTCCTTCTCTTCCATGCT 238
Query 360 ttcttcttctctcttctctctcttctcttcctcatctacttcgatcagatttgcttcttc 419
|| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTTTTCTTCTCACTCCTCTCTGTTCTCTTCCTCATCTACTTCGATCAGATTTGCTTCTTC 298
Query 420 ctcgattccttcttcctctcCGGCGCCGCCAGATTAGCCGCGGGTTTCACCGGTGCTGTA 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 299 CTCGATTCCTTCTTCCTCTCCGGCGCCGCCAGGTTAGCCGCGGGTTTCACCGGCGCTGTA 358
Query 480 ACCGCTCTCTCCGCGGTTTGTCTACTCTTCGCCGCAGCTAATTTCGTTTACTCAGATGTT 539
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 359 ACCGCTCTCTCCGCGGTTTGTCTCCTCTTCGCCGCTGCTAATTTCGTTTACTCCGATGTT 418
Query 540 CCGCTTCAGTACGAGATGGCTCAACGCATGGTTAGCTCCGTCGGTGACTGGTCTTGTGTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 CCGCTTCAGTACGAGATGGCTCAACGCATGGTTAGCTCCGTCGGTGACTGGTCTTCTGTC 478
Query 600 AAAACTGCTCTCGATCTCGGTTGTGGCCGTGGTATCCTCCTCAATGCCGTCGCTACACAG 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 AAAACTGCTCTCGATCTCGGTTGTGGCCGTGGTATCCTCCTCAATGCCGTCGCTACTCAG 538
Query 660 CTTAAGAAAACCGGTAGCTCCGGTCGGGTCGTCGGGTTAGACCGCTCTAAACGCACCACT 719
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTTAAGAAAACCGGTAGCTCTGGTCGGGTCGTCGGGTTAGACCGCTCTAAACGCACCACT 598
Query 720 CTCTCCACTCTCCGCACCGCTAAACTCGAAGGTGTGCAAGAGTATGTGACATGCCGTGAA 779
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 CTCTCCACTCTCCGTACCGCTAAACTCGAAGGTGTGCAAGAGTATGTGACTTGCCGTGAA 658
Query 780 GGAGATGTGAAGACGTTGCCGTTTGGCGATAATTACTTCGACGTGGTGGTCTCGTCGGTG 839
|||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 659 GGAGATGTTAAAACGTTACCGTTTGGGGATAACTACTTCGACGTGGTGGTCTCGTCTGTG 718
Query 840 TTCGTTCACACGGTGGGGAAAGAGCATGGTCAGAAGTCGGTGGAAGCTGCGGCGGAGAGA 899
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 719 TTCGTTCACACCGTGGGGAAAGAGCATGGTCAGAAGTCGGTGGAAGCGGCGGCGGAGAGA 778
Query 900 ATGAGAGTGCTCGGAGAGATTGTGAGAGTTGTGAAGCCAGGAGGTTTGTGTGTGGTTTGG 959
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGAGAGTGCTCGGAGAGATTGTTAGAGTTGTGAAGCCAGGAGGTTTGTGTGTGGTTTGG 838
Query 960 GATCTCTTACACGTGCCGGAGTACGTGCGTCGTCTTCAAGAGCTAAAGATGGAAGATATA 1019
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 839 GATCTCTTACACGTGCCGGAGTACGTGCGGCGTCTTCAAGAGCTGAAGATGGAAGATATC 898
Query 1020 CGAGTCTCGGAGCGAGTCACGGCGTTTATGGCCGGAAGTCACATCGTTTCGTTCCGGAAA 1079
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 CGAGTCTCCGAGCGAGTCACGGCGTTTATGGCCGGAAGTCACATCGTGTCGTTCCGGAAA 958
Query 1080 CCCAGTGAACTCGTCGCCGGGCCCCGTGAAGTCCGCCTCGATTGGAGATGATGACGTGGT 1139
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 CCCAGTGAACTCGTCGCCGGACCCCGTGAAGTCCGCCTCGATTGGAGATGATGACGTGGC 1018
Query 1140 GTTCAAAACGACAGTGATGTGTGTCGGTTCGTTATATAAAAAACGGCACGTAGT-TGAAG 1198
|||||||||| | ||| ||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1019 GTTCAAAACGGCTGTGTTGTGTGTCGGTTCGTTATATAGAAAACGGCACGTAGTCT-AAG 1077
Query 1199 AAGTCTGGAGGTTCGACACTATAATTGTAATATATTAATTACGAATCTACTACTACTACA 1258
||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 1078 ---TCTGGAGATTCGAAACTATAATTGTGATATATTAATTACGAATCTACTG-TACTAAA 1133
Query 1259 CTAGAAAATCAAAATGTATGTGGCGTCTGGGGAGGCGAAGCGGAACCAGATGCTTTGATG 1318
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1134 CTAGAAAATCAAAATGTTTGTGGCGTCTGGGGAGGCGAAGCGGAACCAGATGCTTA-ATG 1192
Query 1319 AAGAGGCATAACGCTGCGTTTGCGTTTTTGTCTTGTATTTGTATAACCTATAGT-TT-TT 1376
||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1193 AAGAGGCATGACGCTGCGTTTGCGTTTTTGTCTTGTATTTGTATAAGCTATAGTATTATT 1252
Query 1377 ATTAACATATTAAGCTGAATCTTAATATGTGATTCAGAGAAG-AGTCTTTTTACTGTTGC 1435
| ||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||
Sbjct 1253 AACAACATATTAAGCTGAATCTGAATGTGTGATTCAGAGAAATAGTCTTTTCACTGTTGC 1312
Query 1436 GTTTTCAAACGCGGGTAAAAAA-CTAACGTCGTGGAGAGAAGTAGCTGA-ACTTTGAAAC 1493
| ||||||||||| |||||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct 1313 GATTTCAAACGCGTGTAAAAAAACTAACGTCGTGTAGAGAAGTAGC-GACACTTTGAAAC 1371
Query 1494 T 1494
|
Sbjct 1372 T 1372
Score = 65.8 bits (35), Expect = 9e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 135 ACCTTCTTCTTCATCGTCTCAGCTCAGGAATTGCT 169
|||||||||||||||||||||||||||||||||||
Sbjct 25 ACCTTCTTCTTCATCGTCTCAGCTCAGGAATTGCT 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5