BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15534.1

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929360 jgi|Araly1|929360|scaffold_301817.1                        316    3e-86


> Ahg929360 jgi|Araly1|929360|scaffold_301817.1
Length=247

 Score =  316 bits (171),  Expect = 3e-86
 Identities = 195/207 (94%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGTGTTTCTGTTTCTTGGTTGACCAGAAGAGGAAGGTTAAAGGAAGCAAACCGGCG  60
            ||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||||
Sbjct  21   ATGGTGTGTTTCTGTTTCTTGGTGGACCAGAAGAGGAAAATAAAAGGAAGCAAACCGGCG  80

Query  61   GCAGGAACGTGTTCCCGGTGTGGTCGTGGTGCAAGAGTCGCCGATATGAAGACTTCGACG  120
            |||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct  81   GCAGGAACGTGTTCCCGGTGTGGTTGTGGTGCAAGAATCGCCGACATGAAGACTTCGACG  140

Query  121  AGGTTTTGTCTTATACCTATTTATTGTAGATCTTGGAGAGCCATCGTCTGCAGCTTTTGC  180
            ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct  141  AGGTTCTGTCTTATACCTATTTATTGCAGATCTTGGAGAGCCATCGTCTGCTGCTTTTGC  200

Query  181  GGCTCTGTTCTTAAATCCTATCGTTGA  207
            ||||||||||||||||| || ||||||
Sbjct  201  GGCTCTGTTCTTAAATCGTACCGTTGA  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7026640024


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5