BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15540.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479003 jgi|Araly1|479003|fgenesh2_kg.3__1704__AT3G15540.1 1317 0.0
> Ahg479003 jgi|Araly1|479003|fgenesh2_kg.3__1704__AT3G15540.1
Length=875
Score = 1317 bits (713), Expect = 0.0
Identities = 847/906 (93%), Gaps = 31/906 (3%)
Strand=Plus/Plus
Query 1 AAGAGAAGTGTAGGAGAAGAAAGTTCTCATTTCATAATTGTATCAAATTGTGAGAGGaaa 60
||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1 AAGAGAAGTGTTGGAGAAGAAAGTTCTCATTCCATAATTGTATCAAATTGT-----G--- 52
Query 61 aaaaGAAGTTCAAGAAATGGAGAAGGAAGGACTCGGGCTTGAGATAACGGAGCTGAGATT 120
|| || |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 53 ---AG-AG-TCAAGAAATGGAGAAGGACGGACTCGGGCTTGAGATAACGGAGCTGAGATT 107
Query 121 GGGGCTTCCGGGGAGAGATGTGGCAGAGAAGATGATGAAGAAGAGAGCTTTCACGGAGAT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 108 GGGGCTTCCGGGGAGAGATGTGGCGGAGAAGATGATGAAGAAGAGAGCTTTCACGGAGAT 167
Query 181 GAATATGACGTCGTCGGGTAGTAATAGTGATCAATGTGAAAGCGGCGTCGTTTCATCTGG 240
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GAACATGACGTCTTCTGGTAGTAATAGTGATCAATGTGAAAGCGGCGTCGTTTCATCTGG 227
Query 241 TGGTGACGCTGAGAAGGTTAATGATTCGCCGGCGGCGAAAAGCCAGGTGGTGGGGTGGCC 300
|||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 228 TGGTGACGTTGAGAAGGTTAATGATTCGCCGGCGGCAAAAAGTCAGGTGGTGGGGTGGCC 287
Query 301 ACCGGTTTGTTCTTACCGGAAGAAAAACAGCTGTAAGGAAGCTTCGACCACGAAAGTGGG 360
||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 288 ACCGGTTTGCTCTTACCGGAGGAAAAACAGCTGTAAGGAAGCTTCGACCACAAAAGTGGG 347
Query 361 GTTAGGGTATGTGAAAGTGAGCATGGATGGTGTGCCTTATTTGAGGAAGATGGATCTTGG 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TTTAGGGTATGTGAAAGTTAGCATGGATGGTGTGCCTTATTTGAGGAAGATGGATCTTGG 407
Query 421 TTCGAGCCAAGGCTATGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGG 480
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 408 TTCGAGCCAAGGCTATGATGATCTAGCCTTTGCTCTTGATAAGCTTTTCGGTATCCGTGG 467
Query 481 CATCGGTGTGGCCTTGAAAGATGGTGACAACTGCGAATACGTTACCATATACGAAGACAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 468 CATCGGTGTGGCCTTGAAAGATGGTGACAACTGCGAATACGTTACCATATACGAGGACAA 527
Query 541 AGATGGAGACTGGATGCTCGCCGGTGATGTACCTTGGGGGATGTTTCTAGAGTCATGCAA 600
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 528 AGATGGAGACTGGATGCTCGCCGGCGATGTACCTTGGGGGATGTTTATAGAGTCATGCAA 587
Query 601 GAGGTTGAGAATAATGAAAAGATCGGATGCTACCGGGTTTGGGCTGCAGCCTAGAGGAGT 660
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 588 GAGGCTGAGGATAATGAAAAGATCGGATGCTTCCGGGTTTGGGCTGCAGCCTAGAGGAGT 647
Query 661 AGACGAGTGATGATGACTTGAACAAGAAGCAAGGAGCTGGTTCATTAATTTAATCTTAAA 720
||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 648 AGACGAGTGATGATGACTTGAACAAGAAGCAAGAAGCTGGTTAATTAATTTAACCTTAAA 707
Query 721 CTTGATCATCAAGATCCTTTAGAACATTTTTCCTATTCATGTtatataaatatatatgtt 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 708 CATGATCATCAAGATCCTTTAGAACATTTTTCCTATTCATGTTATATAAATATAT-T-TT 765
Query 781 atagtatattatTTTGCAACAAAATTTCATGTTATGGTTTTGCATAATTATCTTCAGAAA 840
| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 766 ---G------------CAACAAAATTTCAAGTTATGGTTT-GCATAATTATCTTCAGAAA 809
Query 841 GACAGCtatatatatataCACTACTTGTTTCTTGAGTGTTGAGTTAAAACATTAATCTGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GACAGCTATATATATATACACTACTTGTTTCTTGAGTGTTGAGTTAAAACATTAATCTGT 869
Query 901 TTCAAA 906
||||||
Sbjct 870 TTCAAA 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5