BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15550.1
Length=2213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904498 jgi|Araly1|904498|Al_scaffold_0003_1626 3465 0.0
> Ahg904498 jgi|Araly1|904498|Al_scaffold_0003_1626
Length=2184
Score = 3465 bits (1876), Expect = 0.0
Identities = 2087/2190 (95%), Gaps = 9/2190 (0%)
Strand=Plus/Plus
Query 4 ATGGGCGATTATGGTATAACGGAGGAAGATCTGGTGATCGAGGAAGCTCAAGGCTATCCT 63
|||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1 ATGGACGATTATGGTATAACGGAAGAAGATCTGGTTATCGAGGAAGCTCAGGGCTATCCG 60
Query 64 AGAGCTTACACTAAGATCTGTCGCGATTTTGATGCTTTTCCTTACAAAAATGGTCCTCCT 123
|||||||| | |||||||||||||||||||| | |||||| |||| |||||||||||||
Sbjct 61 CGAGCTTACGCGAAGATCTGTCGCGATTTTGAAGTTTTTCCGTACAGAAATGGTCCTCCT 120
Query 124 TTCACTTTCATGCCCTACATTCTTCAGCAGAACGAGAGCTTGAGATGCAGAGAAGTAGAT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCACTTTCATGCCCTACATTCTTCAGCAGAACGAGAGCTTGAGATGCAGAGAAGTAGAT 180
Query 184 -CAGATGTTTCCAGTGATTGATCCGAAAGCGAGACCAACAACAAAACCCAAGATCTTCCT 242
| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 181 GC-GATGTTTCCAGTAATTGATCCCAAAGCGAGACCAACAACAAAACCCAAGATTTTCCT 239
Query 243 CAGTCTCTTGTGGAAACAGCTTAATCATCTAGGAAATGCAGGATTTGATCCAGCTGTTAT 302
||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 240 CAGTCTCCTCTGGAAACAGCTTAATCATCTAGGCAATGCTGGATTTGATCCAGCTGTTAT 299
Query 303 TCGGATTGATCCATATGGGAATGTTGTTTACTTCCACGCTGATTCAGCTTCTCCTCTTGC 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCGGATTGATCCATATGGGAATGTTGTTTACTTCCACGCTGATTCAGCTTCTCCTCTTGC 359
Query 363 TTGGAGTTTTGATCATTGGTTCCCTTGCTCAAGAGGAGGTTTAACAGTACCAAGCAACCT 422
|||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 360 TTGGAGTTTTGACCATTGGTTCCCTTGCTCAAGAGGTGGTCTAACAGTACCAAGCAACCT 419
Query 423 AAGGATAGTGCAATGGCAAGCACGCAAGAACAAGAAGGACAAGCTTGAGTTCTTAGTACC 482
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 AAGGATAGTGCAATGGCAAGCACGCAAGAACAAGAAAGACAAGCTTGAGTTCTTAGTACC 479
Query 483 ATGGTGGGATCTTCAAGTTGGTATTTCTGTGAATCAGTTCTTATCGATTTTCGCTGCTTC 542
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 480 ATGGTGGGATCTTCAAGTTGGTATTTCAGTGAATCAGTTCTTGTCGATTTTCGCTGCTTC 539
Query 543 TAGTTCTGATTTCAGGAGGAGGGCATTTTCATTCTTGTTCAAAGAAGGCGAAAACGAAGA 602
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGTTCTGATTTCAGGAGGAGAGCATTTTCATTCTTGTTCAAAGAAGGCGAAAACGAAGA 599
Query 603 ACTTAACGGTATACAAATGGTTGAATCACACCATTTTCCACAACATTTTGTTGAATCAAA 662
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTAACGGTATACAAATGGTTGAGTCACACCATTTTCCACAACATTTTGTTGAATCAAA 659
Query 663 AGACAAGTTTGGGCTTGCTTCAGCTGCAGTTGTTTTTTCAAGAAGAGATCCTTATGACCC 722
|| ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 660 GGAGAAGTTCGGGCTTGCTTCAGCTGCAGTTGTTGTTTCTAGAAGAGATCCTTATGACCC 719
Query 723 TTCATTAGTCTTGAGATCCCTTGATTACAATCGTCAAACACCTGCAAGGAAGATGAGATT 782
|||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||
Sbjct 720 TTCATTAGTCTTGAGATCACTCGATTGCAATCGACAAACACCTGCAAGGAAGATGAGATT 779
Query 783 TGGTGCAACCAAAGAGAATGAGACTCCAGACTTAATGAAAAATCCGTATCAAGCCATTGT 842
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGGTGCAGCCAAAGAGAATGAGACTCCAGACTTAATGAAAAATCCGTATCAAGCCATTGT 839
Query 843 TGCTGCGAGGGACTCACTGAGACACCGGGAGGAAGCGCAGAATATGAGAGCCGAGATGAA 902
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 TGCTGCGAGGGACTCATTGAGACACCGAGAGGAAGCGCAGAATATGAGAGCCGAGATGAA 899
Query 903 GAAGTTGGATGATGAAACGAATGATTTGACAAGAAAGAACAATGAAGATCGGCTTACTAT 962
||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct 900 AAAGTTAGATGATGAAACAAATGATTTGACAAGAAAGAACAGTGAAGATCGGCTTAGTAT 959
Query 963 TCAGGAGCTAGAGAATGAGCTGGTTAAGCGAAGAAGAAGGGCTGAAAAGTGCAGGAGATT 1022
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 TCAGGAGCTAGAGAATGAGCTGGTTAAGCGAAGAAGAAGAGCTGAAAAGTGCAGGAGATT 1019
Query 1023 GGCAGAATCTCAATGCTCTTACAGGAATACACTCGAGAAGATGATCCGTGATGCTATGCA 1082
||||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 GGCAGAAGCTCAATGCTCGTATAGGAATACACTTGAGAAGATGATCCGTGATGCTATGCA 1079
Query 1083 CCAGAGTGTTGTGTATAAAGAACAAGTGAGGTTAAACCAGGCTGCGAGTAGTGCGCTTAT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCAGAGTGTTGTGTATAAAGAACAAGTGAGGTTAAACCAGGCTGCGAGTAGTGCGCTTAT 1139
Query 1143 GGCAAGATTAGAGGCGCAAAAAGCGATTTGTGATGGTTCAGAGAAAGAACTTCACAAGAA 1202
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGCAAGATTAGAGGCGCAAAAGGCGATTTGTGATGGTTCAGAGAAAGAACTTCACAAGAA 1199
Query 1203 GTTTAAAGAAAGAG-AGGAGCTGGAGAATCTAGTGAAGCCTGAGTTAGAGAAAGCAAGGA 1261
|||||||||||||| || | |||||||||| ||||| |||||||||||||||||||||||
Sbjct 1200 GTTTAAAGAAAGAGTAGAA-CTGGAGAATCAAGTGAGGCCTGAGTTAGAGAAAGCAAGGA 1258
Query 1262 AAAGATCAAGACTTTTGCTGAATGATGAAGATGACTTGTTGCTAGACGATAGAGACAGGA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAAGATCAAGACTTTTGCTGAATGATGAAGATGACTTGTTGCTAGACGATAGAGACAGGA 1318
Query 1322 ACTTATCTCTGTATCTTCCAGGAACAAGTGAAGAGACGTCGTCACATAAGGAGTTAAGGG 1381
| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1319 AGTTATCTCTGTATCTTCCAGGAACAAGTGAAGAAACGTCGTCACACAAAGAGTTAAGGG 1378
Query 1382 TACATTTTGAAGAAGAGCATAAAGCAGCAGCTTCTGAGGCTGAAATTAAGAAGCATTGTG 1441
|||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct 1379 TACACTTTGAAGAAGAGCATGAAGCAGCGGCTTCTGAGGCTGAAACTAAGAAGCATTGTG 1438
Query 1442 AAATAGAGGAGGAGGAAGAGGAACAGAAGACTCCAGAGGTATCTGAGAAGTCTCTTGTTG 1501
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct 1439 AAATAGAGGAGGA--A-GAGGAACAAAAAACTCCAGAGGTATCTGAGAAGTCTCTTGTTG 1495
Query 1502 CGTTGGAAGATGATAAACCGGTTGAAGAAAAGCCAGATGTAGAAGAGGGGAAGAGAAGCA 1561
||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 1496 CGTTGGAAGATAAAAAACCGGTTGAAGAAAAGCTAGATGTAGAAGAAGGGAAGAGAGGCA 1555
Query 1562 ACAGAAGCTTCAGAGCATTCCATGTTTTCAAGGCACCTGAGAATGAGGAAGATGAGGAAA 1621
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1556 GCAGAAGCTTCAGAGCATTCCATGTTTTCAAGGCACCAGAGAAGGAGGAAGATGAGGAAA 1615
Query 1622 GCAGGAGAGAGCGAGGGAAAGGAAACGTTGAGAAATGGCTTCATATTTTACTGGAGAACA 1681
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1616 GCAGGAGAGAGCGAGGGAAAGGAAATGTTGAGAAATGGCTTCATATTTTACTGGAGAACA 1675
Query 1682 ACAGCAAAAGCGATCCACACGATCTTCAAACAGAGAAAAGCAAGAAGATTGATGAAATGA 1741
||| |||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct 1676 ACAACAAAAGCGATCCACACGATCTTGAAACCGAAAAAAGCAAGAAGATTGATGAAATGA 1735
Query 1742 TAGAGAAACTGGACCACAAGTTCCCTTTTCTTGAAAAGGTTGATGAAGAAGAAGTGGATT 1801
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1736 TAGAGAAACTGGACCACAAGTTCCCTTTTCTTGAAAAGGTTGATGAAGAAGAAGTGGACT 1795
Query 1802 TGAAGTTGCAGGCTAAGGAGGCAAACAACAACACAAGCAAGGTT-GATGAAGAAGAGGTG 1860
|| |||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||
Sbjct 1796 TGCAGTTGCAGGCTAAGGAACCAAACAACAACACAAGCAAGGTTAG-TGAAGAAGAAGTG 1854
Query 1861 GACTTGCAGTTGCAGGCTAAGGAGACAAACAACAACACAAGCAAGGTGGAAATAAGAACT 1920
|||||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||
Sbjct 1855 GACTTGCAGTTGCAGGCTAAGGAGGCTAACAAGAACACAAGCAAGGTGGAAACAAGAACT 1914
Query 1921 GAAAGTTCTCGTAGAAGCAGAATGAGTTTTGATTTAAAGAACACACCAGAGAAGAGTGGC 1980
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1915 GAAAGTTCTCGTAGAAGCAGAATGAGTTTTGATTTAAAGAACACACCAGAGAAGAGCGGC 1974
Query 1981 AGAGACAAAGTGGTGAAGAGATCAGAGAGTGCTAGAACCTTCACAAGGATTCCATCATCT 2040
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1975 AGAGACAAAGTGGTGAAGAGATCAGAGAGTGCTAGAACCTTCAGAAGGATTCCATCATCT 2034
Query 2041 CCATCACTCATCTTTGGAATGAAAAAGGGAATAGACTGCATCAGGAAGAAGCCAGTGGTT 2100
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 CCATCACTCATCTTCGGAATGAAAAAGGGAATAGACTGCATCAGGAAGAAGCCAGTGGTT 2094
Query 2101 TCAGGAAACGACGATGAGAATGAGTATCTTGTCAAGAACAACTTCATCAAGTCTTCTCTT 2160
||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2095 TCAAGAAACGACGATGAGAACGAGTATCTTGTTAAGAACAACTTCATCAAGTCTTCTCTT 2154
Query 2161 CAAACAATCAAACGAGCTGTCAAATTCTAG 2190
||| ||||||||||||||||||||||||||
Sbjct 2155 CAATCAATCAAACGAGCTGTCAAATTCTAG 2184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83303365815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5