BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15570.1
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929366 jgi|Araly1|929366|scaffold_301823.1 2130 0.0
Ahg904498 jgi|Araly1|904498|Al_scaffold_0003_1626 418 8e-116
> Ahg929366 jgi|Araly1|929366|scaffold_301823.1
Length=1396
Score = 2130 bits (1153), Expect = 0.0
Identities = 1323/1405 (94%), Gaps = 12/1405 (1%)
Strand=Plus/Plus
Query 199 TGTGAAGaaaaaaaCTCGAAACAAATGAAGAAAACACTTTCGCCGGAACCCGTCACCATC 258
|||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1 TGTGAA-CAAAAAACTCGAAACAAATGAAGAAAACACCTTCGCCGGAACCAGTCACCATC 59
Query 259 TACGGCAATC-GCCAAGAAACCTTCGTCGGTGATATGGAGTACTACACTTACTTCGACGA 317
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 TACGGCAATCAG-CAAGAAACCTTCGTCGGAGATATGGAGTACTACACTTACTTCGACGA 118
Query 318 ATCTTGTATCCAAGACATGAACTATTTCGTCAAAACAATCACCGGCATCAAATCCAAAGG 377
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 ATCTTGTATCCATGACATGAACTATTTCGTCAAAACAATCACCGGAATCAAATCCAAAGG 178
Query 378 AATCAGACCAGACCTTATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGA 437
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AATCCGACCAGACCTCATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGA 238
Query 438 TCTCTCCGGCAATGTCTCCGCCATTATTTCCTCCACCTCCTTAGAATCCAAGAACAACCA 497
|||||||||||| ||||||||||| | || ||||||||| |||||||||||||| |||
Sbjct 239 TCTCTCCGGCAACGTCTCCGCCATCA-TT--TCCACCTCCGTAGAATCCAAGAACCACCT 295
Query 498 CAATGACACACAGCCAGAGAGCGTCACTGCATCTGTAATGAAGAAACGGTTTTTCGTCGA 557
||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 296 CAATGACACACAGCCGGAGAGCGTCACGGCGTCTGTTATGAAGAAACGATTTTTCGTCGA 355
Query 558 AACACTAATCGGAATCCTCCCACCGGAGAAAGACTCTGTTCCTTGCAATTTCCTCCTCCG 617
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 356 AACACTAATCGGAATCCTCCCGCCGGAGAAAGACTCTGTTCCTTGCAATTTCCTTCTCCG 415
Query 618 TCTCCTCAGGACAGCGAAAATGGTCGGAGCTAATCCGAATTATTTAACGGAGCTTGAAAC 677
|||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 416 TCTCCTCAGGGCAGCGAAAATGGTCGGAGCTAATCCGAACTACTTAACGGAGCTTGAAAC 475
Query 678 CAGAGTATCGTGGCAGCTCGACCAAGCTTCTCTCAAGGAGCTTATGATACCTTCCTTCAG 737
|||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 476 CAGAGTCTCGTGGCAGCTTGACCAAGCCTCTCTCAAGGAGCTTATGATACCTTCTTTCAG 535
Query 738 CTACACGTCTGGTACTTTGCTTGACATTGAGCTTGTGACGCGTCTCGTGAACAAGTTTTC 797
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |
Sbjct 536 CTACACGTCTGGTACTTTGCTTGACGTTGAGCTTGTGACACGTCTCGTGAACAAATTTGC 595
Query 798 TGGATTGGATAGTGAAGGTGTTAAAACC-GCTGCGGCTCTTGTTAAAGTGGCCAAGCTTG 856
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 596 TGGATTGGATAGTGAAGGTGTTAAAACCAG-TGCGGCTCTTGTTAAAGTGGCCAAGCTTG 654
Query 857 TTGACTCCTACCTCGCTGAAGCTGCCGTTGACGGTGGTTTAGCTTTACCGGAGTTTATTT 916
|||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 655 TTGATTCGTACCTCGCTGAAGCAGCCGTTGACGGTGGTTTGGCTTTACCGGAGTTTATAT 714
Query 917 CCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGAGCCA 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 715 CCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGGGCCA 774
Query 977 TTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGTA 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 TTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGCA 834
Query 1037 GACTTATTGATAGCAGAAAGTTATCACCGGAAGCAGCTCTTCACGCGGCTCAGAATGATC 1096
| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 835 GGCTTATTGATAGCAGAAAGCTATCACCAGAAGCAGCTCTTCACGCGGCTCAGAATGATC 894
Query 1097 GTTTACCGGTGAGAGCAATCATTGGAGTGTTGTTCACTGAGCAGACAAAGCTAAGTCGTC 1156
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 895 GTTTACCGGTGAGAGCAATCATTAGAGTTTTGTTCACTGAGCAGACAAAGCTAAGTCGTC 954
Query 1157 ACATTGACTGTAATAGTAGCTCGATAAGCAGCACTACGAGGAGTCCAACAAACGCTTCTG 1216
|||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||| ||||||
Sbjct 955 ACATTGACTGGAATGGTAGCTCTATAAGCAGCACGACGAAGAGTCCAACAAACCCTTCTG 1014
Query 1217 GTTCACATTACCTCGAGGGAGGTTCTGCAGCGCGGTGTTTGTCTAAACGTGAGATGAATG 1276
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 GTTCACATTACTTGGAGGGAGGTTCTGCAGCGCGGTGCTTGTCTAAACGTGAGATGAATG 1074
Query 1277 TTCAACAAGCAGAGATAAGAAGGCTACGGGAGGATGTGGTGAGGCTGCAGAGTCAGTGTG 1336
|||| |||||||||||||||||||| || || |||||||||||||||||||| |||||
Sbjct 1075 TTCAGCAAGCAGAGATAAGAAGGCTTCGAGAAGATGTGGTGAGGCTGCAGAGCCAGTGCA 1134
Query 1337 GCGCTATGCATTTCCAGCTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGGAGTAAAG 1396
| ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1135 GTGCTATGCATTTGCAGGTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGAAGTAAAG 1194
Query 1397 GTTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGTGTTG 1456
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1195 GGTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGCGTTG 1254
Query 1457 AAAAGGGCGAGGAAGAATCTGGTGACAATGGTGAAGGATTTGAGCCACGGACTCCTGGTA 1516
|||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 1255 AAAAAGGTGAGGAAGAATCTGGTGA---TGGTGAAGGATTTGAGCCTCGGACTCCTGGGA 1311
Query 1517 ATATGAAGACAAGGCTTGTCAAAGGAAGAACAACACCTTCAAGGTGGAGAAAATCTATGT 1576
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1312 ATATGAAGACAAGGCTTGTCAAAGGAAGAACGACACCTTCAAGGTGGAGAAAATCTATGT 1371
Query 1577 CTTAA-TCTTGAATTAATGAAAACA 1600
||||| |||||||||||||||||||
Sbjct 1372 CTTAAATCTTGAATTAATGAAAACA 1396
> Ahg904498 jgi|Araly1|904498|Al_scaffold_0003_1626
Length=2184
Score = 418 bits (226), Expect = 8e-116
Identities = 240/247 (97%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 1753 CTAGAATTTGACAGCTCGTTTGATTGTTTGAAGAGAAGACTTGATGAAGTTGTTCTTGAC 1812
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2184 CTAGAATTTGACAGCTCGTTTGATTGATTGAAGAGAAGACTTGATGAAGTTGTTCTTAAC 2125
Query 1813 AAGATACTCATTCTCATCGTCGTTTCCTGAAACCACTGGCTTCTTCCTGATGCAGTCTAT 1872
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2124 AAGATACTCGTTCTCATCGTCGTTTCTTGAAACCACTGGCTTCTTCCTGATGCAGTCTAT 2065
Query 1873 TCCCTTTTTCATTCCAAAGATGAGTGATGGAGATGATGGAATCCTTGTGAAGGTTCTAGC 1932
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2064 TCCCTTTTTCATTCCGAAGATGAGTGATGGAGATGATGGAATCCTTCTGAAGGTTCTAGC 2005
Query 1933 ACTCTCTGATCTCTTCACCACTTTGTCTCTGCCACTCTTCTCTGGTGTGTTCTTTAAATC 1992
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2004 ACTCTCTGATCTCTTCACCACTTTGTCTCTGCCGCTCTTCTCTGGTGTGTTCTTTAAATC 1945
Query 1993 AAAACTC 1999
|||||||
Sbjct 1944 AAAACTC 1938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5