BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15580.1
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479007 jgi|Araly1|479007|fgenesh2_kg.3__1708__AT3G15580.1 730 0.0
> Ahg479007 jgi|Araly1|479007|fgenesh2_kg.3__1708__AT3G15580.1
Length=534
Score = 730 bits (395), Expect = 0.0
Identities = 499/547 (91%), Gaps = 15/547 (3%)
Strand=Plus/Plus
Query 33 TTGCTTTTGAGAGACGGAGACAAAAACACACACGACGAAGAAATCTCCGGGCGGTCGAAG 92
||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1 TTGCTTTCAAGAGACGGAGACAAAAACACACACGACGAAGAAATCTCCCGGTGGTCGAAA 60
Query 93 AAGATGAAATCGTTCAAGGAACAATACACGTT-GGATGAAAGGCTCGCGGAGTCGCGGGA 151
|||||||||||||||||||||||||||||||| || |||||||||||| || ||||| ||
Sbjct 61 AAGATGAAATCGTTCAAGGAACAATACACGTTAGG-TGAAAGGCTCGCAGAATCGCGAGA 119
Query 152 GATAATCGCTAAGTACCCTACTCGGATTCCAGTAATTGCTGAGAAGTATTGCAAAACGGA 211
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 GATAATCGCTAAGTATCCTACTCGGATTCCAGTAATTGCTGAGAAGTATTGCAAAACAGA 179
Query 212 TCTGCCTGCCATCGAGAAAAAGAAGTTTCTGGTTCCAAGAGATATGTCAGTTGGCCAATT 271
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 TCTACCTGCCATCGAGAAAAAGAAGTTTCTGGTTCCAAGAGATATGTCAGTTGGTCAATT 239
Query 272 CATCTACATATTGAGTGCTAGGTTACATTTGTCTCCTGGTAAAGCCTTATTCGTGTTTGT 331
|||||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 240 CATCTATATCTTGAGTGCTAGGTTACATTTATCTCCTGGTCAAGCGTTATTCGTGTTTGT 299
Query 332 CAACAACACTCTCCCTCAAACTGCTGCTCTGATGGACTCGGTCTACGAATCTTACAAAGA 391
||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||
Sbjct 300 GAACAACACTCTCCCTCAAACTGCTGCTCTGATGGATTCGGTCTATGAGTCGTACAAAGA 359
Query 392 TGATGATGGATTCGTTTACATGTGCTATAGCAGTGAGAAAACCTTTGGTTGATCCAATAA 451
|| ||||| || ||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 360 CGAAGATGGGTTTGTTTACATGTGCTATAGCAGTGAGAAAACCTTTGGCTGAGCCAA-AA 418
Query 452 TGATGTTAGTGTCTGTGTACATATACTTT-AAACATAAGATGTTCACTACATCAAAAGAC 510
|||||||||||| ||||||||||| ||||||||| ||| ||||||||| ||||||
Sbjct 419 TGATGTTAGTGT------ACATATACTTTGAAACATAAGCTGTACACTACATCCAAAGAC 472
Query 511 ATCAAACACTTGTTAAGCTTTATATGACTGCTGCTTGTTTTATCCTTAGACTTTGTTCAT 570
| ||||| |||||||||||| |||| |||||| | ||||||||||||||||||||||||
Sbjct 473 A-CAAACTCTTGTTAAGCTT-ATATTACTGCT--T-GTTTTATCCTTAGACTTTGTTCAT 527
Query 571 CTGTGCA 577
|||||||
Sbjct 528 CTGTGCA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22797504366
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5