BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15590.1
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479008 jgi|Araly1|479008|fgenesh2_kg.3__1709__AT3G15590.1 3096 0.0
> Ahg479008 jgi|Araly1|479008|fgenesh2_kg.3__1709__AT3G15590.1
Length=2066
Score = 3096 bits (1676), Expect = 0.0
Identities = 1961/2094 (94%), Gaps = 38/2094 (2%)
Strand=Plus/Plus
Query 29 TTGGCACGTATAAACCCTAGCAGAGACATTAAACCCTGAAAGTAATTAGGGATCACTGTT 88
||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| ||
Sbjct 1 TTGGCACGTATAAACCCTAGCAGAGGCATTAAACCCTGATAGTAGTTAGGGATCAC--TT 58
Query 89 CTCCGGCTCCGGCGAAAAAATCCCTCG-AAATCGATCCTAACCTCAATTGATTGAAGGAA 147
|| ||||||||||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 59 CT----CTCCGGCGAAACAATCACTCGAAAATCGATCCTAACCTCAATTGATTGAAGGAA 114
Query 148 GTTATGTATTCGCTTTCGAGGATTCTCCAAAGGAGTCAAAGATATAACTTTGCACCTTCT 207
|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 115 GTAATGTATTCGCTTTCGAGGATTCTCCGAAGGAGTCGAAGATATAACTTTGCACCTTCT 174
Query 208 TCGTTTGGTGCGGTCAGTAAATTAGAAG--T-ATCAAGTGGTGGTGATAAAGAACGGGTC 264
|||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||
Sbjct 175 TCGTTTGGTGCGGTCAGTAAATTAGAAGTATCATCAAGTGGTGGTGACAAAGAAAGGGTC 234
Query 265 TTTAAATCATTTGGATTGATTTATAGCAAACCTCAAGGTTTAGTCAGACTTTATTCCGCA 324
|||||||||| |||||||||||||| ||| ||||||||||| |||||||||||||| ||
Sbjct 235 TTTAAATCATCTGGATTGATTTATAATAAATCTCAAGGTTTAATCAGACTTTATTCCACA 294
Query 325 AGAGATGTGTTTTCACGGTTCTTTGGCATCCACAAGCTTTCTTCTATAGCTGATGCTAAA 384
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 295 AGAGATGTGTTTTCACGGTTCTTTGGCATCCATAAGCTTTCTTCTATAGCTGATGCTGAA 354
Query 385 GATAAAGGAGATGAGGTAGTTAGGGAAGAGGAGCTGTCTGAATCAGAGGAGGCGGTTCCT 444
|| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||
Sbjct 355 GACAAAGGAGATGAGGTAGTAAGGGAAGAGGAGTTGTCTGAATCAGAGGAGGCGTTTCCT 414
Query 445 GTTTCTGGGGATGTACCAGAGGGAGTTGTTGATGATGATTCTTTGTTCGAGCCTGAACTT 504
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 415 GTTTCTGGGGATGTATCAGAGGGAGTTGTTGATGATGATTCTTTGTTCGAGTCTGAGGTT 474
Query 505 GGTAGTGACAATGATGATCTTGAAATTGAAGAGAAGCATTCGAAAGATGGTGGGAAACCA 564
|||||||||||||||| || || ||| ||| | | | ||||||||||||
Sbjct 475 GGTAGTGACAATGATGGTC------TT-----GAA--ATT-G--A-A-GGTGGGAAACCA 516
Query 565 ACTAAGAAAAGAGGTCAATCTGAGCTGTACGAATCCATTGTTGCTTATAAATCAGTGAAA 624
|| |||||||||| |||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 517 ACAAAGAAAAGAGCTCAATCTGAGCTATATGAATCCATTGTTGCCTATAAATCAGTGAAA 576
Query 625 CATGTTCTTGAAAAATGGGTCAAAGAAGGAAAAGATTTGAGTCAAGCTGAGGTTACTCTT 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 577 CATGTTCTTGAAAAATGGGTCAAAGAAGGAAAAGATTTGAGTCAAGCTGAGGTTTCTCTT 636
Query 685 GCTATACACAATCTGCGTAAACGCAAATCCTATGCTATGTGTTTGCAGTTGTGGGAGTGG 744
|||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 637 GCTATATTCCATCTGCGTAAACGTAAATACTATGCTATGTGTTTGCAGTTGTGGGAGTGG 696
Query 745 TTGGGAGCTAATACGCAGTTTGAGTTCACAGAGGCAAATTATGCTTCTCAGTTGGATTTG 804
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 697 TTGGGAGCTAATACGCAGTTTGAGTTCACAGAGGCAAATTATGCTTCTCAACTGGATTTG 756
Query 805 GTGGCCAAGGTACATAGTTTACAAAAAGCTGAAATCTTTTTGAAAGATATTCCAGAATC- 863
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 757 GTGGCCAAGGTACATAGTTTACAAAAAGCTGAAAACTTTTTGAAGGATATTCCAGAATCT 816
Query 864 TTCTAGGGGAGAAGTAGTATACAGAACCCTGCTGGCAAATTGTGTACTTAAGCATCATGT 923
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TTC-AGGGGAGAAGTGGTATACAGAACCCTGCTGGCAAATTGTGTACTTAAGCATCATGT 875
Query 924 AAATAAAGCTGAAGA-CATTTTCAACAAAATGAAAGAGCTAAAATTTCCAACAAGTGTGT 982
||||||||||||||| | |||| || ||||||||||| |||||||||| |||||| ||||
Sbjct 876 AAATAAAGCTGAAGATC-TTTTTAATAAAATGAAAGAACTAAAATTTCGAACAAGCGTGT 934
Query 983 TTGCTTGCAACCAGCTGCTTCTCCTCTACAGTATGCATGATAGAAAGAAGATAAGTGATG 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 TTGCTTGCAACCAGCTGCTTCTCCTCTACAGTATGCATGATAGAAAGAAGATAAGTGATG 994
Query 1043 TTTTGTTGCTAATGGAGAGAGAAAACATCAAGCCGAGTCGTGCTACCTATCATTTTTTAA 1102
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 995 TTTTGTTGCTAATGGAGAGAGAAAACATCAAGCCGAGTCGTGGTACGTATCAGTTTTTAA 1054
Query 1103 TCAATAGTAAAGGTTTAGCCGGAGACATAACTGGAATGGAGAAGATCGTGGAGACAATTA 1162
||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
Sbjct 1055 TCAATAGTAAAGGTTTAGCTGGGGACATAAATGGAATGGAGAAGATCGTGGAGACAATGA 1114
Query 1163 AGGAAGAAGGCATCGAACTAGATCCTGAACTGCAGTCTATTCTGGCTAAGTACTACATAA 1222
|||||| ||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1115 AGGAAGGAGGTATCGAAGTAGATCCAGAACTGCAGTCTACTCTGGCTAAGTACTACATAA 1174
Query 1223 GAGCGGGGCTTAAAGAAAGAGCACAAGACCTTATGAAGGAGATAGAAGGGAAAGGTTTGC 1282
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 GAGCGGGGCTTAAAGAACGAGCACAAGACCTTATGAAGGAGATAGAAGGGAAAGGTTTGC 1234
Query 1283 AACAAACTCCATGGGTGTGCCGGTCATTACTCCCACTTTATGCAGACATAGGAGACAGTG 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 AACAAACTCCATGGGTGTGCCGGTCATTACTCCCACTTTATGCAGACATAGGAGACAGTG 1294
Query 1343 ACAATGTGAGAAGACTGAGTAGGTTTGTTGATCAAAATCCGAGATACGATAATTGCATTT 1402
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1295 ACAATGTGAGAAGACTGAGTAGGTTTGTTGATCAAAATCCGAGATATGATAATTGCATTT 1354
Query 1403 CTGCCATTAAAGCATGGGGAAAGCTGAAGGAAGTCGAAGAAGCAGAGGCAGTGTTTGAGA 1462
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CTGCCATTAGAGCATGGGGAAAGCTGAAGGAAGTCGAAGAAGCAGAGGCAGTGTTTGAGA 1414
Query 1463 GACTTGTGGAGAAATACAAAATTTTCCCTATGATGCCATATTTTGCCCTCATGGAGATAT 1522
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1415 GACTTGTGGAGAAATACAAAATTTTCCCTATGCTGCCATATTTTGCCCTCATGGAGATAT 1474
Query 1523 ACACAGAGAACAAGATGCTAGCAAAAGGCAGAGATCTGGTTAAAAGAATGGGAAATGCAG 1582
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1475 ACACAGAGAACAAGATGCTAGCAAAAGGCAAAGATCTGGTTAAAAGAATGGGAAATGCAG 1534
Query 1583 GGATTGCGATTGGGCCGTCGACATGGCACGCGCTTGTGAAGCTATACATCAAAGCAGGAG 1642
|| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1535 GGGTTACGATTGGCCCGTCGACATGGCACGCTCTTGTGAAGCTATACATCAAAGCGGGAG 1594
Query 1643 AAGTTGGAAAAGCTGAGTTGATATTGAACAGAGCTACAAAGGATAATAAGATGAGACCTA 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 AAGTTGGAAAAGCTGAGTTGATATTGAACAGAGCTACAAAGGATAATAAGATGAGACCTA 1654
Query 1703 TGTTCACTACTTACATGGCGATTCTTGAAGAATATGCAAAAAGAGGCGATGTTCATAACA 1762
|||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1655 TGTTCATTTCTTACATGGCGATTCTCGAGGAATATGCAAAAAGAGGCGATGTTCATAACA 1714
Query 1763 CAGAGAAGGTATTCATGAAAATGAAAAGGGCAAGCTATGCAGCTCAGCTTATGCAGTATG 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 CAGAGAAGGTATTCATGAAAATGAAAAGGGCAAGCTATGCAGCTCAGCTTATGCAGTATG 1774
Query 1823 AAACCGTGCTCCTGGCTTATATCAACGCCAAAACTCCTGCTTACGGGATGATTGAGAGGA 1882
||||||| || ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1775 AAACCGTTCTGTTGGCTTATATCAAAGCCAAAACTCCTGCTTACGGGATGTTTGAGAGGA 1834
Query 1883 TGAAGGCAGACAATGTGTTCCCGAACAAGAGTCTAGCTGCGAAACTGGCTCAGGTTAATC 1942
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1835 TGAAGGCAGATAATGTGTTCCCAAACAAGAGTCTTGCTGCGAAACTGGCTCAGGTTAATC 1894
Query 1943 CGTTTAAAAAGTGTCCAGTGTCTGTTTTACTTGAC-ATATAACGATAATCATCTTATGTA 2001
||||||||||||||||||||||||||||||||||| | || || ||||||||| ||||||
Sbjct 1895 CGTTTAAAAAGTGTCCAGTGTCTGTTTTACTTGACGA-ATGACAATAATCATCCTATGTA 1953
Query 2002 TTGAGCT-GTTAAGT-GTTTGTTCTGGTTGCTTCCAAGCTAGGAAATAATAAACAGAGGA 2059
|||||| | | | |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1954 TTGAGCGAGCTGTTTTGTTTGTTCTGTTTGCTTCCAAGCTAGGAAATAATAAATAGAGGA 2013
Query 2060 TTCGTTTTTCTTCCAAAGTTTCTCATTTTTGAGTT-TGTGTTCCTGTGGTTTTT 2112
||||||||||||||||||||||||| ||| ||| | ||||||| ||||||||||
Sbjct 2014 TTCGTTTTTCTTCCAAAGTTTCTCACTTT-GAGGTCTGTGTTCTTGTGGTTTTT 2066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5