BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15590.1 Length=2150 Score E Sequences producing significant alignments: (Bits) Value Ahg479008 jgi|Araly1|479008|fgenesh2_kg.3__1709__AT3G15590.1 3096 0.0 > Ahg479008 jgi|Araly1|479008|fgenesh2_kg.3__1709__AT3G15590.1 Length=2066 Score = 3096 bits (1676), Expect = 0.0 Identities = 1961/2094 (94%), Gaps = 38/2094 (2%) Strand=Plus/Plus Query 29 TTGGCACGTATAAACCCTAGCAGAGACATTAAACCCTGAAAGTAATTAGGGATCACTGTT 88 ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| || Sbjct 1 TTGGCACGTATAAACCCTAGCAGAGGCATTAAACCCTGATAGTAGTTAGGGATCAC--TT 58 Query 89 CTCCGGCTCCGGCGAAAAAATCCCTCG-AAATCGATCCTAACCTCAATTGATTGAAGGAA 147 || ||||||||||| |||| |||| |||||||||||||||||||||||||||||||| Sbjct 59 CT----CTCCGGCGAAACAATCACTCGAAAATCGATCCTAACCTCAATTGATTGAAGGAA 114 Query 148 GTTATGTATTCGCTTTCGAGGATTCTCCAAAGGAGTCAAAGATATAACTTTGCACCTTCT 207 || ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 115 GTAATGTATTCGCTTTCGAGGATTCTCCGAAGGAGTCGAAGATATAACTTTGCACCTTCT 174 Query 208 TCGTTTGGTGCGGTCAGTAAATTAGAAG--T-ATCAAGTGGTGGTGATAAAGAACGGGTC 264 |||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||| Sbjct 175 TCGTTTGGTGCGGTCAGTAAATTAGAAGTATCATCAAGTGGTGGTGACAAAGAAAGGGTC 234 Query 265 TTTAAATCATTTGGATTGATTTATAGCAAACCTCAAGGTTTAGTCAGACTTTATTCCGCA 324 |||||||||| |||||||||||||| ||| ||||||||||| |||||||||||||| || Sbjct 235 TTTAAATCATCTGGATTGATTTATAATAAATCTCAAGGTTTAATCAGACTTTATTCCACA 294 Query 325 AGAGATGTGTTTTCACGGTTCTTTGGCATCCACAAGCTTTCTTCTATAGCTGATGCTAAA 384 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 295 AGAGATGTGTTTTCACGGTTCTTTGGCATCCATAAGCTTTCTTCTATAGCTGATGCTGAA 354 Query 385 GATAAAGGAGATGAGGTAGTTAGGGAAGAGGAGCTGTCTGAATCAGAGGAGGCGGTTCCT 444 || ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| Sbjct 355 GACAAAGGAGATGAGGTAGTAAGGGAAGAGGAGTTGTCTGAATCAGAGGAGGCGTTTCCT 414 Query 445 GTTTCTGGGGATGTACCAGAGGGAGTTGTTGATGATGATTCTTTGTTCGAGCCTGAACTT 504 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || Sbjct 415 GTTTCTGGGGATGTATCAGAGGGAGTTGTTGATGATGATTCTTTGTTCGAGTCTGAGGTT 474 Query 505 GGTAGTGACAATGATGATCTTGAAATTGAAGAGAAGCATTCGAAAGATGGTGGGAAACCA 564 |||||||||||||||| || || ||| ||| | | | |||||||||||| Sbjct 475 GGTAGTGACAATGATGGTC------TT-----GAA--ATT-G--A-A-GGTGGGAAACCA 516 Query 565 ACTAAGAAAAGAGGTCAATCTGAGCTGTACGAATCCATTGTTGCTTATAAATCAGTGAAA 624 || |||||||||| |||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 517 ACAAAGAAAAGAGCTCAATCTGAGCTATATGAATCCATTGTTGCCTATAAATCAGTGAAA 576 Query 625 CATGTTCTTGAAAAATGGGTCAAAGAAGGAAAAGATTTGAGTCAAGCTGAGGTTACTCTT 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 577 CATGTTCTTGAAAAATGGGTCAAAGAAGGAAAAGATTTGAGTCAAGCTGAGGTTTCTCTT 636 Query 685 GCTATACACAATCTGCGTAAACGCAAATCCTATGCTATGTGTTTGCAGTTGTGGGAGTGG 744 |||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 637 GCTATATTCCATCTGCGTAAACGTAAATACTATGCTATGTGTTTGCAGTTGTGGGAGTGG 696 Query 745 TTGGGAGCTAATACGCAGTTTGAGTTCACAGAGGCAAATTATGCTTCTCAGTTGGATTTG 804 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 697 TTGGGAGCTAATACGCAGTTTGAGTTCACAGAGGCAAATTATGCTTCTCAACTGGATTTG 756 Query 805 GTGGCCAAGGTACATAGTTTACAAAAAGCTGAAATCTTTTTGAAAGATATTCCAGAATC- 863 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 757 GTGGCCAAGGTACATAGTTTACAAAAAGCTGAAAACTTTTTGAAGGATATTCCAGAATCT 816 Query 864 TTCTAGGGGAGAAGTAGTATACAGAACCCTGCTGGCAAATTGTGTACTTAAGCATCATGT 923 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 817 TTC-AGGGGAGAAGTGGTATACAGAACCCTGCTGGCAAATTGTGTACTTAAGCATCATGT 875 Query 924 AAATAAAGCTGAAGA-CATTTTCAACAAAATGAAAGAGCTAAAATTTCCAACAAGTGTGT 982 ||||||||||||||| | |||| || ||||||||||| |||||||||| |||||| |||| Sbjct 876 AAATAAAGCTGAAGATC-TTTTTAATAAAATGAAAGAACTAAAATTTCGAACAAGCGTGT 934 Query 983 TTGCTTGCAACCAGCTGCTTCTCCTCTACAGTATGCATGATAGAAAGAAGATAAGTGATG 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 935 TTGCTTGCAACCAGCTGCTTCTCCTCTACAGTATGCATGATAGAAAGAAGATAAGTGATG 994 Query 1043 TTTTGTTGCTAATGGAGAGAGAAAACATCAAGCCGAGTCGTGCTACCTATCATTTTTTAA 1102 |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| Sbjct 995 TTTTGTTGCTAATGGAGAGAGAAAACATCAAGCCGAGTCGTGGTACGTATCAGTTTTTAA 1054 Query 1103 TCAATAGTAAAGGTTTAGCCGGAGACATAACTGGAATGGAGAAGATCGTGGAGACAATTA 1162 ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| | Sbjct 1055 TCAATAGTAAAGGTTTAGCTGGGGACATAAATGGAATGGAGAAGATCGTGGAGACAATGA 1114 Query 1163 AGGAAGAAGGCATCGAACTAGATCCTGAACTGCAGTCTATTCTGGCTAAGTACTACATAA 1222 |||||| ||| |||||| ||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1115 AGGAAGGAGGTATCGAAGTAGATCCAGAACTGCAGTCTACTCTGGCTAAGTACTACATAA 1174 Query 1223 GAGCGGGGCTTAAAGAAAGAGCACAAGACCTTATGAAGGAGATAGAAGGGAAAGGTTTGC 1282 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1175 GAGCGGGGCTTAAAGAACGAGCACAAGACCTTATGAAGGAGATAGAAGGGAAAGGTTTGC 1234 Query 1283 AACAAACTCCATGGGTGTGCCGGTCATTACTCCCACTTTATGCAGACATAGGAGACAGTG 1342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1235 AACAAACTCCATGGGTGTGCCGGTCATTACTCCCACTTTATGCAGACATAGGAGACAGTG 1294 Query 1343 ACAATGTGAGAAGACTGAGTAGGTTTGTTGATCAAAATCCGAGATACGATAATTGCATTT 1402 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1295 ACAATGTGAGAAGACTGAGTAGGTTTGTTGATCAAAATCCGAGATATGATAATTGCATTT 1354 Query 1403 CTGCCATTAAAGCATGGGGAAAGCTGAAGGAAGTCGAAGAAGCAGAGGCAGTGTTTGAGA 1462 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1355 CTGCCATTAGAGCATGGGGAAAGCTGAAGGAAGTCGAAGAAGCAGAGGCAGTGTTTGAGA 1414 Query 1463 GACTTGTGGAGAAATACAAAATTTTCCCTATGATGCCATATTTTGCCCTCATGGAGATAT 1522 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1415 GACTTGTGGAGAAATACAAAATTTTCCCTATGCTGCCATATTTTGCCCTCATGGAGATAT 1474 Query 1523 ACACAGAGAACAAGATGCTAGCAAAAGGCAGAGATCTGGTTAAAAGAATGGGAAATGCAG 1582 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1475 ACACAGAGAACAAGATGCTAGCAAAAGGCAAAGATCTGGTTAAAAGAATGGGAAATGCAG 1534 Query 1583 GGATTGCGATTGGGCCGTCGACATGGCACGCGCTTGTGAAGCTATACATCAAAGCAGGAG 1642 || || ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1535 GGGTTACGATTGGCCCGTCGACATGGCACGCTCTTGTGAAGCTATACATCAAAGCGGGAG 1594 Query 1643 AAGTTGGAAAAGCTGAGTTGATATTGAACAGAGCTACAAAGGATAATAAGATGAGACCTA 1702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1595 AAGTTGGAAAAGCTGAGTTGATATTGAACAGAGCTACAAAGGATAATAAGATGAGACCTA 1654 Query 1703 TGTTCACTACTTACATGGCGATTCTTGAAGAATATGCAAAAAGAGGCGATGTTCATAACA 1762 |||||| | |||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1655 TGTTCATTTCTTACATGGCGATTCTCGAGGAATATGCAAAAAGAGGCGATGTTCATAACA 1714 Query 1763 CAGAGAAGGTATTCATGAAAATGAAAAGGGCAAGCTATGCAGCTCAGCTTATGCAGTATG 1822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1715 CAGAGAAGGTATTCATGAAAATGAAAAGGGCAAGCTATGCAGCTCAGCTTATGCAGTATG 1774 Query 1823 AAACCGTGCTCCTGGCTTATATCAACGCCAAAACTCCTGCTTACGGGATGATTGAGAGGA 1882 ||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1775 AAACCGTTCTGTTGGCTTATATCAAAGCCAAAACTCCTGCTTACGGGATGTTTGAGAGGA 1834 Query 1883 TGAAGGCAGACAATGTGTTCCCGAACAAGAGTCTAGCTGCGAAACTGGCTCAGGTTAATC 1942 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1835 TGAAGGCAGATAATGTGTTCCCAAACAAGAGTCTTGCTGCGAAACTGGCTCAGGTTAATC 1894 Query 1943 CGTTTAAAAAGTGTCCAGTGTCTGTTTTACTTGAC-ATATAACGATAATCATCTTATGTA 2001 ||||||||||||||||||||||||||||||||||| | || || ||||||||| |||||| Sbjct 1895 CGTTTAAAAAGTGTCCAGTGTCTGTTTTACTTGACGA-ATGACAATAATCATCCTATGTA 1953 Query 2002 TTGAGCT-GTTAAGT-GTTTGTTCTGGTTGCTTCCAAGCTAGGAAATAATAAACAGAGGA 2059 |||||| | | | |||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1954 TTGAGCGAGCTGTTTTGTTTGTTCTGTTTGCTTCCAAGCTAGGAAATAATAAATAGAGGA 2013 Query 2060 TTCGTTTTTCTTCCAAAGTTTCTCATTTTTGAGTT-TGTGTTCCTGTGGTTTTT 2112 ||||||||||||||||||||||||| ||| ||| | ||||||| |||||||||| Sbjct 2014 TTCGTTTTTCTTCCAAAGTTTCTCACTTT-GAGGTCTGTGTTCTTGTGGTTTTT 2066 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80903680380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5