BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15605.4
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904502 jgi|Araly1|904502|Al_scaffold_0003_1630 1620 0.0
> Ahg904502 jgi|Araly1|904502|Al_scaffold_0003_1630
Length=1509
Score = 1620 bits (877), Expect = 0.0
Identities = 1055/1139 (93%), Gaps = 20/1139 (2%)
Strand=Plus/Plus
Query 310 CGCTTCTTGGGAGAGTATGAGCCACAATGGGATGAGTTGTTTCTGGCTTGTGGTGATGAA 369
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGCTTCTTGGGAGACTATGAGCCACAATGGGATGAGTTGTTTCTGGCTTGTGGTGATGAA 357
Query 370 AAAGGGGTTTCCAATATCAATGATGTGGAGACCATCATGGGGAAATGCAATGTTGTATGC 429
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 AAAGGGGTTTCCAATATCAATGATGTCGAGACCATCATGGGGAAATGCAATGTTGTATGC 417
Query 430 ACATCTGATGACCGAAGAAACCCACGACCAGGAACCAAGGAGCTGCGGAGAGCTAAATAT 489
|||||||| ||||||||||| ||||||||||||| ||| ||| || |||||||||| |||
Sbjct 418 ACATCTGAGGACCGAAGAAATCCACGACCAGGAAGCAATGAGTTGAGGAGAGCTAACTAT 477
Query 490 ATCTTCTCCCGCACTTTTGATACAAGACTCAGAATTATATCAGAAGACTTTGCAGATGCT 549
||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 478 GTCTTCTCCCGCACCTTCGATACAATACTGAGAATTATATCAGAAGACTTTGCAGATGCT 537
Query 550 ATAGCCGGAATTGGAGTGGATAAACTCTTCAACATGAGAAGAGATAAACAGCCTGTAAAA 609
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATAGCTGGAATTGGAGTGGATAAACTCTTCAACATGAGAAGAGATAAACAGCCTGTAAAA 597
Query 610 CGTCTAAACTCAAGCGCAGCTGCCATTACTAGGGCTTCTCCAGTTAAATC-TTTTCGTCC 668
||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 598 CGTGTAAACTCAAGCGCAGCTGCCAGTACTAGGGCTTCTCCAGTTAAA-CATTTTCGTCC 656
Query 669 AGATTTGGGATCAACAAAGTTAGGTAAACATGATAACAGAGATGCAAAGCTGATGAGTAG 728
|||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 657 AGATTTGGGATCAACAAAGTTAGGAAAAAATGATAACAGAGATGGAAAGCTGATGAGTAG 716
Query 729 AACAAGCTCGTTAAAGAAAGTCACTTTTCTGGAGGACCGTGCTGATCATGTACATGTGAA 788
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 717 AACAAGCTCGTTAAAGAAAGTCTCTTTTCTGGAGGACCGTGCTGGTCATGTACATGTGAA 776
Query 789 -AAGGAACCCTCCTGTCAATACTGAAACCAC-TACAAGAGGTCAGATACCGATACTCAAA 846
|| ||||||||| |||||||||| ||||| | ||||||||| | ||||||||||
Sbjct 777 GAAA-AACCCTCCTATCAATACTGATACCACGT-CAAGAGGTC-----C-GATACTCAAA 828
Query 847 ACAAGAGCATTTGGGGAGTTATATGCTTCAGGTTCATCAGT-GAATGCTAAGCCTTCTAA 905
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 829 ACCAGAGCATTTGGGGAGTTATATGCTTCAGGTTCATCAGTCGA-TGCTAAGCCTTCTAA 887
Query 906 AAAGAGAAAGCTTATACTCAACACGCCAGAAACAGATGATTCAGATGATCAAGGCCCTCA 965
|||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 888 AAAGAGGAAGCTTATACTCAACACACCAGAAACAGATGATTCAGATGATCCAGGCCCTCA 947
Query 966 ATCAGGAGAGAAGAAATTAATTAAAAATCCTCCTCTTGTAGAAAAGGCTCCAAGTCAGAA 1025
|||||||||||||||| | || ||||||||||||||| ||||||| ||||| ||||||||
Sbjct 948 ATCAGGAGAGAAGAAAATCATGAAAAATCCTCCTCTTATAGAAAAAGCTCCTAGTCAGAA 1007
Query 1026 CATCGAGaaaaaaaGCTGGTACAAGAAACTGCCTTTTGAGGACGAACTAAAGCCGGCTAT 1085
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1008 CATCGAGAAAAAAAGCTGGTACAAGAAATTGCCTTTTGAGGACGAACTAAAACCGGCTAT 1067
Query 1086 AGAAAAAGGTAGGGTGCTCTTAATTGAGAACCTGGAACCATCATACACATCGCTGGAGGT 1145
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1068 AGAAAAAGGTAGGGTGCTCTTAATTGAGAACCTTGAACCATCATACACATCGCTGGAGGT 1127
Query 1146 AGAGTTTCTTTTTAGGCAAGCATTCAAAGAAGGAGTTGATGCTAAGATGATCCCTTCAAG 1205
|||| ||| | ||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1128 AGAGGATCTATGTAGGCAAGCTTTCAAAGAAGCAGTTGATGCTAAGATGATCCCTTCAAG 1187
Query 1206 TCCCATGTCTAGCCCACATAGTGG------CAGGGCTCTTGTGATTTTTGGAACCACAAA 1259
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1188 TCTTGTGTCTAGCCCACATAGTGGTATATGCAGGGCTCTTGTGATTTTTGGAACCACAAA 1247
Query 1260 GGCAGCTGATTCTGCTATGTCGCGGTTAAATGAAGATTGTCTGATGTTATCTGGCCAGAG 1319
||||||||||||||| ||||||| ||||| |||| | || ||||||||| ||||||||||
Sbjct 1248 GGCAGCTGATTCTGCCATGTCGCAGTTAACTGAAAAGTGCCTGATGTTACCTGGCCAGAG 1307
Query 1320 AGCTCTAACGGGTAGCAAAAATGTCCCAGTCGAAATTGGAAGATGTAGAAGCTTTACTGG 1379
| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1308 ACCTCTATTGGGTAGCAAAAAGGTCCCACTCGAAATTGGAAGATGTAGAAGCTTTACTGG 1367
Query 1380 CCATTTTAACATGGTGGATAGATCTCTGATGACGGCTCAGAAGGTAAGTTGTTGCATTA 1438
|||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1368 CCATTTTAGCATGGTGGATAGATCAATGATGACAACTCAGAAGGTAAGTTGTTGCATTA 1426
Score = 279 bits (151), Expect = 3e-74
Identities = 175/186 (94%), Gaps = 3/186 (2%)
Strand=Plus/Plus
Query 126 TGGG-ATATCTCAGCAGGATAACTTCTCTATGTTGCAATCGAATAGTGCTGGTGGAGAAG 184
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2 TGGGAATATCACAGCAGGATAACTTCTCTATGTTGCAATCGAATAGTGCCGGTGGAGTAG 61
Query 185 ACAACCCTGATTTTAAGTGGGGTGCTAAGAGAGGGGTGGGACGGAAAGATAATAAAGTCC 244
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 62 AGAAACCTGATTTTAAGTGGGGTGCTAAGAGAGGGGTGGGTCGGAAAGATAATAAAGTCC 121
Query 245 GGTTCTATGAATCATTTACCCT-TGAGGGCATCGAGTACCGGCTTTTTGACTGTGCTTAC 303
|||||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||
Sbjct 122 GGTTCTATGAATCATTTACC-TATGACGGCATCGAGTACTGGCTTTTTGACTGTGCTTAC 180
Query 304 TTTTAC 309
||||||
Sbjct 181 TTTTAC 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5