BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15610.1
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479012 jgi|Araly1|479012|fgenesh2_kg.3__1713__AT3G15610.1 1978 0.0
Ahg474398 jgi|Araly1|474398|fgenesh2_kg.1__4352__AT1G52730.2 1149 0.0
> Ahg479012 jgi|Araly1|479012|fgenesh2_kg.3__1713__AT3G15610.1
Length=1371
Score = 1978 bits (1071), Expect = 0.0
Identities = 1190/1246 (96%), Gaps = 13/1246 (1%)
Strand=Plus/Plus
Query 173 TGAATTTTAGCGCCAATTTAACCACTGAATCGTTTGATTAGAAGCTA-AGATTTGGTCTT 231
||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||
Sbjct 132 TGAATTTTAGCGCCAATTTTACCACTGAATCGTTTGATTAGAAGC-AGCGATTTCGTCTT 190
Query 232 ACGATCGATCTAAGTAGGGTTCTTCTTCTTAAGTGTGT-GTT-TTGTTAAAATTAGTAAA 289
| |||||||| || |||||||||||||||| | | | ||| | |||||||||||||||
Sbjct 191 AGGATCGATCAAATTAGGGTTCTTCTTCTT-CTTCT-TCGTTGTCGTTAAAATTAGTAAA 248
Query 290 GAGAGATGGAGAAGAAGAAAGTCGCGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTG 349
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 249 AAGAGATGGAGAAGAAGAAAGTAGCGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTG 308
Query 350 TTGTGGATTTGTTCTACAGTCCAATCACTCCTGATGGTTTCTTCCTCATCAGCGCAAGTA 409
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 309 TTGTGGATTTGTTCTACAGTCCAATCACACCTGATGGTTTCTTCCTCATCAGCGCAAGCA 368
Query 410 AAGATTCTCAACCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAG 469
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 AAGATTCTCATCCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAG 428
Query 470 GTCATAAAGGTGCTGTGTGGAGTTCTTGTCTT-GATAACAATGCTTTACGTGCAGCTTCT 528
| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 429 GGCATAAAGGTGCTGTGTGGAGTTCTTGT-TTGGATAACAACGCTTTACGTGCAGCTTCT 487
Query 529 GCATCTGCTGATTTTTCAGCGAAGCTTTGGGATGCTTTGACTGGGGATGTCTTGCATTCT 588
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 488 GCATCTGCTGATTTTTCAGCGAAACTTTGGGATGCTTTGACCGGGGATGTGTTGCATTCT 547
Query 589 TTTGAGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAATATCTAATC 648
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 548 TTTGAGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAATTTCTAATC 607
Query 649 ACAGGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 ACAGGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCT 667
Query 709 ACAGAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACATGGCTTCACGGTGATCAA 768
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 668 ACAGAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACTTGGCTTCACGGTGATCAA 727
Query 769 ACAATATTAAGTTCTTGCACTGATATTGGTGGTGTGAGGTTATGGGATGTGAGGAGTGGC 828
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 728 ACCATATTAAGTTCTTGCACTGATATTGGCGGTGTGAGGTTATGGGATGTGAGGAGTGGC 787
Query 829 AAAATAGTGCAAACTCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGAT 888
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AAAATTGTGCAAACTCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGAT 847
Query 889 GGACGGTATATAACAACTGCCGATGGG-TCAACTGTTAAATTTTGGGATGCAAATCATTT 947
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 848 GGACGGTATATCACAACTGCCGA-GGGATCAACTGTTAAATTTTGGGATGCAAATCATTT 906
Query 948 TGGACTAGTGAAAAGTTACGACATGCCCTGCAATATCGAATCTGCATCGCTTGAGCCAAA 1007
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 907 TGGACTAGTGAAGAGTTACGACATGCCCTGCAATATCGAATCTGCGTCGCTTGAGCCTAA 966
Query 1008 ATCTGGCAACAAATTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTCCA 1067
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 ATCTGGCAACAAGTTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTCCA 1026
Query 1068 CACCGGAAAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGATT 1127
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CACGGGAGAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGATT 1086
Query 1128 TGCACCAACAGGTGAGTCTTATGCTTCAGGGTCTGAAGATGGTACAATCAGAATTTGGCA 1187
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1087 TGCACCAACAGGTGAGTCTTATGCTTCAGGGTCTGAAGATGGTACAATCAGAATCTGGCA 1146
Query 1188 AACTGGACCGGTGAATCCTGAAGAGATCAGCGAGTCAAAGCCGAAGCAGAGTGTGGATGA 1247
|||||| ||||||||||||||||||| ||| || ||||| ||||||||||||||||||||
Sbjct 1147 AACTGGTCCGGTGAATCCTGAAGAGAACAGTGAATCAAAACCGAAGCAGAGTGTGGATGA 1206
Query 1248 GGTTGCTCGTAAGATTGAAGGCTTTCACATTAACAAGGAAGGAAAAACCGCAGAGAAACC 1307
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1207 GGTTACTCGTAAGATTGAAGGCTTTCACATTAACAAGGAAGGGAAAACCGCAGAGAAACC 1266
Query 1308 ATCTGATGCTTAAACCAAGAAAAGAAC--CAAGAAAAATGGCTGCTTCTCTTTGTCTTCT 1365
|||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||
Sbjct 1267 ATCTGATGCTTAAACCAAGAAATGAACAACAACAAAAATGGCTGCTTCTCTT-GTCTTCT 1325
Query 1366 TACTGTGTTTTTACTTCCAGACTGAATATACGGAAATTCAAAACAA 1411
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1326 TACTGTGTTTTTACTTCCAGACTGAATATACGGAAATTTAAAACAA 1371
Score = 167 bits (90), Expect = 2e-40
Identities = 100/104 (96%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 1 GAATTTTCGGGAAGCAGCATTTCCACTGGAGCTGCAA-AATCTTCCTATCAAAATTATAG 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GAATTTTCGGGAAGCAGCATTTCCACTGGAGCTGCAATAATCTTCCTATCAAAATTATAG 60
Query 60 ATCGATCCAAGTTTTAGATTCGAGAATTATTTT-CTCCAAATTA 102
|||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 61 ATCGATCCAAGTTTTAGATTCGAGAAA-ATTTTTCTCCAAATTA 103
> Ahg474398 jgi|Araly1|474398|fgenesh2_kg.1__4352__AT1G52730.2
Length=1245
Score = 1149 bits (622), Expect = 0.0
Identities = 905/1041 (87%), Gaps = 22/1041 (2%)
Strand=Plus/Plus
Query 295 ATGGAGAAGAAGAAAGTCG-CGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTGTTGT 353
|||||||||||||| || | ||| ||| | |||||| ||||| ||||| |||||||||||
Sbjct 183 ATGGAGAAGAAGAAGGT-GACGATTCCACAAGTGTGTCATGGACATTCAAGACCTGTTGT 241
Query 354 GGATTTGTTCTACAGTCCAATCACTCCTGATGGTTTCTTCCTCATCAGCGCAAGTAAAGA 413
|||||||||||||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct 242 TGATTTGTTCTACAGTCCAATTACGCCTGATGGTTTCTTCCTCATCAGCGCTAGCAAAGA 301
Query 414 TTCTCAACCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAGGTCA 473
||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 302 TTCGCATCCAATGTTGAGAAATGGAGAAACTGGAGACTGGATTGGTACATTTGAAGGGCA 361
Query 474 TAAAGGTGCTGTGTGGAGTTCTTGTCTTGATAACAATGCTTTACGTGCAGCTTCTGCATC 533
||||||||| || |||||||||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 362 TAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCTGCATCTGCTTC 421
Query 534 TGCTGATTTTTCAGCGAAGCTTTGGGATGCTTTGACTGGGGATGT-CTTGCATTCTTTTG 592
|| ||||||||||| || ||||||||||| || || |||||||| | ||||||||||||
Sbjct 422 AGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGC-TGCATTCTTTTG 480
Query 593 AGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAA-TATCTAATCACA 651
|||||||||||||||| ||||||||||||||||| ||||||| ||| | | | |||||
Sbjct 481 AGCACAAGCATATTGTGCGAGCATGCGCCTTCTCAGAGGATACAAAATTGT-TGCTCACA 539
Query 652 GGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCTACA 711
||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||
Sbjct 540 GGAGGGTTTGAGAAAATTCTTCGCGTTTTTGACATGAATCGGTTGGATGCACCTCCTACA 599
Query 712 GAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACATGGCTTCACGGTGATCAAACA 771
||| |||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 600 GAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGTGATCAAACA 659
Query 772 ATATTAAGTTCTTGCACTGATATTGGTGGTGTGAGGTTATGGGATGTGAGGAGTGGCAAA 831
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 660 ATATTAAGTTCCTGCACTGATATTGGTGGTGTAAGGTTATGGGATGTGAGGAGTGGGAAA 719
Query 832 ATAGTGCAAAC-TCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGATGG 890
|| || ||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 720 ATTGTCCAAACGT-TAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGG 778
Query 891 ACGGTATATAACAACTGCCGATGGGTCAACTGTTAAATTTTGGGATGCAAATCATTTTGG 950
|||||||||||||||||| |||||||||||||||||||| ||||| ||||| || |||||
Sbjct 779 ACGGTATATAACAACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCAAACCACTTTGG 838
Query 951 ACTAGTGAAAAGTTACGACATGCCCTGCAATATCGAATCTGCATCGCTT-GAGCCAAAAT 1009
|||||| || ||||||||||||||||||||||| |||||||| || ||| |||||||| |
Sbjct 839 ACTAGTTAAGAGTTACGACATGCCCTGCAATATTGAATCTGCGTC-CTTGGAGCCAAAGT 897
Query 1010 CTGGCAACAAATTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTCCACA 1069
|||| | || || |||||||||||||| ||||||||||| ||| | ||||||||| |||
Sbjct 898 CTGGTGAGAAGTTTGTTGCTGGTGGAGAGGATATGTGGGTCCGAGTATTTGATTTCTACA 957
Query 1070 CCGG-AAAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGATTT 1128
| || || |||||||||||||||||||||||||| ||||| || ||||| ||||| |||
Sbjct 958 CTGGCGAA-GAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTGAGGTTT 1016
Query 1129 GCACCAACAGGTGAGTCTTATGCTTCAGGG-TCTGAAGATGGTACAATCAGAATTTGGCA 1187
| || || || ||||||||| || ||| |||||||| || || |||||||| |||||
Sbjct 1017 ACCCCCACTGGCCTGTCTTATGCCTC-GGGATCTGAAGACGGGACCATCAGAATCTGGCA 1075
Query 1188 AACTGGACCGGTGAATCCTGAAGAGATC--AGCGAG-TCAA--AG-CCGAAGCAGAGTGT 1241
||| ||| | ||||| ||||| | | ||| || |||| || |||||| || ||
Sbjct 1076 AACAACACCAGCAAATCCCGAAGAAAACGAAGCAAGCTCAAGGAGAGTGAAGCATAGCGT 1135
Query 1242 GGATGAGGTTGC-TCGTAAGATTGAAGGCTTTCACATTAACAAGGAAGGAAAAACCGCAG 1300
|||||| ||| | | |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1136 GGATGAAGTTTCAAAG-AAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAACCGCAG 1194
Query 1301 AGAAACCATCTGATGCTTAAA 1321
|||||||||||||| ||||||
Sbjct 1195 AGAAACCATCTGATACTTAAA 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5