BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15620.1 Length=1884 Score E Sequences producing significant alignments: (Bits) Value Ahg479013 jgi|Araly1|479013|fgenesh2_kg.3__1714__AT3G15620.1 2165 0.0 > Ahg479013 jgi|Araly1|479013|fgenesh2_kg.3__1714__AT3G15620.1 Length=1849 Score = 2165 bits (1172), Expect = 0.0 Identities = 1281/1333 (96%), Gaps = 9/1333 (1%) Strand=Plus/Plus Query 26 AGAAATCTCAAAC-ATATTCATGCAACGATTCTGCGTCTGTTCACCTTCAAGTTATCGTC 84 ||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||| Sbjct 1 AGAAATCTCAAACAAT-TTCATGCAACGATTCTCCGTCTGTTCACCTTCAAGCTATCGTC 59 Query 85 TCAATCCCATAACATCAATGGCTACTGGATCCGGTTCACTGATTTGGTTCCGGAAAGGTC 144 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 60 TCAATCCCATAACATCAATGGCTACTAGATCCGGTTCACTGATTTGGTTCCGGAAAGGTC 119 Query 145 TCCGGGTTCACGACAACCCGGCTCTTGAATACGCCTCAAAAGGTTCTGAATTTATGTAT- 203 |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | Sbjct 120 TCCGGGTTCACGACAACCCGGCTCTTGAATTCGCTTCAAAAGGTTCTGAATTTATGT-TC 178 Query 204 CCGGTTTTTGTTATCGACCCGCATTATATGGAGTCAGACCCATCTGCGTTCTCTCCCGGT 263 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 179 CCGGTTTTTGTAATCGACCCGCATTATATGGAGTCCGACCCATCTGCCTTCTCTCCCGGT 238 Query 264 TCGTCTCGCGCCGGGGTAAACCGGATCCGGTTCTTGCTTGAGAGTCTCAAGGATCTCGAT 323 ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 239 TCGTCTCGCGCTGGGGTTAACCGGATCCGGTTCTTGCTGGAGAGTCTCAAGGATCTCGAT 298 Query 324 TCTAGCCTGAAGAAACTTGGTTCACGGTTGCTTGTTTTTAAAGGTGAACCTGGCGAAGTA 383 |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| Sbjct 299 TCTAGCCTGAAGAAACTTGGTTCACGGTTGCTGGTTCTTAAAGGTGAACCTGGTGAAGTA 358 Query 384 CTAG-TTCGTTGCTTGCAAGAGTGGAAGGTGAAGAGGCTTTGCTTTGAATATGATACAGA 442 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 -TTGTTTCGTTGCTTGCAAGAGTGGAAGGTGAAGAGGCTTTGCTTTGAATATGATACAGA 417 Query 443 TCCGTATTATCAAGCTTTAGATGTTAAGGTTAAGGATTATGCTTCTTCAACTGGAGTTGA 502 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 418 TCCGTATTATCAAGCTTTAGATGTTAAAGTTAAGGATTATGCTTCTTCAACTGGAGTTGA 477 Query 503 GGTTTTCTCTCCAGTGAGCCATACTCTGTTCAATCCCGCACACATTATAGAGAAAAACGG 562 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 478 GGTTTTCTCTCCAGTGAGCCATACTCTGTTCAATCCCGCAGACGTTATAGAGAAAAACGG 537 Query 563 TGGGAAGCCACCTTTGAGTTATCAATCATTTCTGAAGGTTGCTGGGGAGCCCTCATGTGC 622 |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| Sbjct 538 TGGGAAGCCACCTTTGAGTTATCAGTCATTTCTGAAGATTGCTGGGGAGCCGTCATGTGC 597 Query 623 TAAATCTGAACTTGTGATGTCTTATTCTTCACTTCCTCCAATTGGAGATATTGGAAACCT 682 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 598 TAAATCTGAACTTGTGATGTCTTATTCTTCACTTCCTCCAATTGGAGATGTTGGAAATCT 657 Query 683 TGGCATTTCAGAAGTACCATCTCTTGAGGAACTTGGCTACA-A-A-GATGATGAACAAGC 739 ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| Sbjct 658 TGGCATTTCAGAAGTACCATCTCTTGAGGAACTTGGCTACAGAGATGATGATGAACAAGC 717 Query 740 TGATTGGACTCCTTTTAGAGGTGGTGAATCAGAAGCCTTAAAAAGATTGACTAAATCAAT 799 ||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 718 TGATTGGACTCCTTTTAGAGGTGGTGAATCAGAAGCCTTGAAAAGATTGACCAAGTCAAT 777 Query 800 CAGTGATAAGGCATGGGTGGCAAACTTTGAGAAACCAAAGGGTGATCCATCTGCTTTCTT 859 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TAGTGATAAGGCATGGGTGGCAAACTTTGAGAAACCAAAGGGTGATCCATCTGCTTTCTT 837 Query 860 GAAGCCTGCTACTACAGTTATGTCACCATATTTGAAATTCGGATGCCTTTCTTCGAGGTA 919 ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 838 GAAGCCTGCAACTACAGTTATGTCACCGTATTTGAAATTTGGATGCCTTTCTTCGAGGTA 897 Query 920 CTTTTATCAATGCCTTCAAAATATTTATAAGGATGTTAAAAAGCATACATCGCCGCCAGT 979 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 898 CTTTTATCAATGCCTTCAAAATATTTATAAGGATGTGAAAAAGCATACATCGCCTCCAGT 957 Query 980 TTCTCTCCTGGGGCAGTTGTTGTGGCGAGAATTTTTCTATACCACTGCATTTGGAACTCC 1039 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || Sbjct 958 TTCTCTCCTTGGACAGTTGTTGTGGCGAGAATTTTTCTATACCACTGCATTTGGGACCCC 1017 Query 1040 TAACTTTGACAAAATGAAGGGAAACCGGATCTGCAAACAGATTCCATGGAACGAGGATCA 1099 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1018 TAATTTTGACAAAATGAAGGGAAACCGGATCTGCAAACAGATTCCATGGAATGAGGATCA 1077 Query 1100 TGCTATGTTGGCTGCTTGGAGGGACGGTAAGACAGGATACCCTTGGATTGATGCCATCAT 1159 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 TGCTATGTTGGCCGCTTGGAGGGACGGTAAGACAGGATACCCTTGGATTGATGCCATCAT 1137 Query 1160 GGTTCAGCTTCTGAAATGGGGTTGGATGCACCATCTAGCGCGTCACTGTGTAGCCTGTTT 1219 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1138 GGTTCAGCTTCTGAAATGGGGTTGGATGCACCATCTAGCGCGTCATTGTGTAGCCTGTTT 1197 Query 1220 TCTTACTCGTGGGGATCTGTTCATACATTGGGAACAAGGGCGTGATGTGTTTGAGAGACT 1279 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 TCTAACTCGTGGGGATCTGTTCATACATTGGGAACAAGGGCGTGATGTGTTTGAGAGACT 1257 Query 1280 TCTGATCGATTCAGACTGGGCAATCAACAATGGAAATTGGATGTGGTTATCATGTTCGTC 1339 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1258 TCTGATCGATTCAGACTGGGCAATCAATAATGGCAATTGGATGTGGTTATCATGTTCGTC 1317 Query 1340 GTTCTTTTACCAG 1352 ||||||||||||| Sbjct 1318 GTTCTTTTACCAG 1330 Score = 652 bits (353), Expect = 0.0 Identities = 429/463 (93%), Gaps = 15/463 (3%) Strand=Plus/Plus Query 1389 AAGTATGATCCTGATGGGAAGTACATTAGGCATTTTCTACCGGTACTGAAAGATATGCCA 1448 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1391 AAGTATGATCCTGATGGGAAGTACATTAGGCATTTTCTCCCGGTACTGAAAGATATGCCA 1450 Query 1449 AAGCAATATATATATGAGCCATGGACAGCACCATTGAGCGTTCAAACTAAAGCAAACTGC 1508 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1451 AAGCAGTATATATATGAGCCATGGACAGCACCAATGAGCGTTCAAACTAAAGCAAACTGC 1510 Query 1509 ATAGTCGGGAAGGACTACCCAAAGCCAATGGTATTGCACGATTCAGCAAGCAAGGAGTGC 1568 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1511 ATAGTAGGGAAGGACTACCCAAAGCCAATGGTATTGCACGATTCAGCAAGCAAGGAGTGC 1570 Query 1569 AAGAGGAAGATGGGTGAAGCATATGCATTGAACAAGAAGATGGATGGTAAAGTAGATGAA 1628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1571 AAGAGGAAGATGGGTGAAGCATATGCATTGAACAAGAAGATGGATGGTAAAGTAGATGAA 1630 Query 1629 GAAAATTTGAGGGATTTGAGGAGAAAGCTTCAGAAAGATGAACATGAAGAGTCCAAAATC 1688 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1631 GAAAATTTGAGGGATTTGAGGAGAAAGCTTGAGAAAGATGAACATGAAGAGTCCAAAATC 1690 Query 1689 AGGAACCAACGACCAAAACTCAAATAGGTAGAGGATTAAAAA----------CCTTTTCT 1738 |||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 1691 AGGAACCAACGACCAAAACTCAAATAGGTA-AGGATTAAAAAAAAAAAAAAACCATTTCT 1749 Query 1739 GAAATTGATGAAGTGTGTATTGTTACAATAATTCTAGCTGGTATGACTTAATCATGGTTA 1798 | ||| |||||| | ||||| |||||| || | |||||| |||||||||||||||||| Sbjct 1750 GCGATTAATGAAGAGGGTATTATTACAACAACTGTAGCTGTTATGACTTAATCATGGTTT 1809 Query 1799 -CATTTCTATTTCTATGTaaaaaaaTCTGTTATGCATCAATGT 1840 ||||| |||||| ||||||||| ||||||||||| |||||| Sbjct 1810 TCATTT--ATTTCTCTGTAAAAAA-TCTGTTATGCAACAATGT 1849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70771675210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5