BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15620.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479013 jgi|Araly1|479013|fgenesh2_kg.3__1714__AT3G15620.1 2165 0.0
> Ahg479013 jgi|Araly1|479013|fgenesh2_kg.3__1714__AT3G15620.1
Length=1849
Score = 2165 bits (1172), Expect = 0.0
Identities = 1281/1333 (96%), Gaps = 9/1333 (1%)
Strand=Plus/Plus
Query 26 AGAAATCTCAAAC-ATATTCATGCAACGATTCTGCGTCTGTTCACCTTCAAGTTATCGTC 84
||||||||||||| || |||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1 AGAAATCTCAAACAAT-TTCATGCAACGATTCTCCGTCTGTTCACCTTCAAGCTATCGTC 59
Query 85 TCAATCCCATAACATCAATGGCTACTGGATCCGGTTCACTGATTTGGTTCCGGAAAGGTC 144
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TCAATCCCATAACATCAATGGCTACTAGATCCGGTTCACTGATTTGGTTCCGGAAAGGTC 119
Query 145 TCCGGGTTCACGACAACCCGGCTCTTGAATACGCCTCAAAAGGTTCTGAATTTATGTAT- 203
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 120 TCCGGGTTCACGACAACCCGGCTCTTGAATTCGCTTCAAAAGGTTCTGAATTTATGT-TC 178
Query 204 CCGGTTTTTGTTATCGACCCGCATTATATGGAGTCAGACCCATCTGCGTTCTCTCCCGGT 263
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 179 CCGGTTTTTGTAATCGACCCGCATTATATGGAGTCCGACCCATCTGCCTTCTCTCCCGGT 238
Query 264 TCGTCTCGCGCCGGGGTAAACCGGATCCGGTTCTTGCTTGAGAGTCTCAAGGATCTCGAT 323
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 239 TCGTCTCGCGCTGGGGTTAACCGGATCCGGTTCTTGCTGGAGAGTCTCAAGGATCTCGAT 298
Query 324 TCTAGCCTGAAGAAACTTGGTTCACGGTTGCTTGTTTTTAAAGGTGAACCTGGCGAAGTA 383
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 299 TCTAGCCTGAAGAAACTTGGTTCACGGTTGCTGGTTCTTAAAGGTGAACCTGGTGAAGTA 358
Query 384 CTAG-TTCGTTGCTTGCAAGAGTGGAAGGTGAAGAGGCTTTGCTTTGAATATGATACAGA 442
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 -TTGTTTCGTTGCTTGCAAGAGTGGAAGGTGAAGAGGCTTTGCTTTGAATATGATACAGA 417
Query 443 TCCGTATTATCAAGCTTTAGATGTTAAGGTTAAGGATTATGCTTCTTCAACTGGAGTTGA 502
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 TCCGTATTATCAAGCTTTAGATGTTAAAGTTAAGGATTATGCTTCTTCAACTGGAGTTGA 477
Query 503 GGTTTTCTCTCCAGTGAGCCATACTCTGTTCAATCCCGCACACATTATAGAGAAAAACGG 562
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 478 GGTTTTCTCTCCAGTGAGCCATACTCTGTTCAATCCCGCAGACGTTATAGAGAAAAACGG 537
Query 563 TGGGAAGCCACCTTTGAGTTATCAATCATTTCTGAAGGTTGCTGGGGAGCCCTCATGTGC 622
|||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct 538 TGGGAAGCCACCTTTGAGTTATCAGTCATTTCTGAAGATTGCTGGGGAGCCGTCATGTGC 597
Query 623 TAAATCTGAACTTGTGATGTCTTATTCTTCACTTCCTCCAATTGGAGATATTGGAAACCT 682
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 598 TAAATCTGAACTTGTGATGTCTTATTCTTCACTTCCTCCAATTGGAGATGTTGGAAATCT 657
Query 683 TGGCATTTCAGAAGTACCATCTCTTGAGGAACTTGGCTACA-A-A-GATGATGAACAAGC 739
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 658 TGGCATTTCAGAAGTACCATCTCTTGAGGAACTTGGCTACAGAGATGATGATGAACAAGC 717
Query 740 TGATTGGACTCCTTTTAGAGGTGGTGAATCAGAAGCCTTAAAAAGATTGACTAAATCAAT 799
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 718 TGATTGGACTCCTTTTAGAGGTGGTGAATCAGAAGCCTTGAAAAGATTGACCAAGTCAAT 777
Query 800 CAGTGATAAGGCATGGGTGGCAAACTTTGAGAAACCAAAGGGTGATCCATCTGCTTTCTT 859
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TAGTGATAAGGCATGGGTGGCAAACTTTGAGAAACCAAAGGGTGATCCATCTGCTTTCTT 837
Query 860 GAAGCCTGCTACTACAGTTATGTCACCATATTTGAAATTCGGATGCCTTTCTTCGAGGTA 919
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 838 GAAGCCTGCAACTACAGTTATGTCACCGTATTTGAAATTTGGATGCCTTTCTTCGAGGTA 897
Query 920 CTTTTATCAATGCCTTCAAAATATTTATAAGGATGTTAAAAAGCATACATCGCCGCCAGT 979
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 898 CTTTTATCAATGCCTTCAAAATATTTATAAGGATGTGAAAAAGCATACATCGCCTCCAGT 957
Query 980 TTCTCTCCTGGGGCAGTTGTTGTGGCGAGAATTTTTCTATACCACTGCATTTGGAACTCC 1039
||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 958 TTCTCTCCTTGGACAGTTGTTGTGGCGAGAATTTTTCTATACCACTGCATTTGGGACCCC 1017
Query 1040 TAACTTTGACAAAATGAAGGGAAACCGGATCTGCAAACAGATTCCATGGAACGAGGATCA 1099
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 TAATTTTGACAAAATGAAGGGAAACCGGATCTGCAAACAGATTCCATGGAATGAGGATCA 1077
Query 1100 TGCTATGTTGGCTGCTTGGAGGGACGGTAAGACAGGATACCCTTGGATTGATGCCATCAT 1159
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGCTATGTTGGCCGCTTGGAGGGACGGTAAGACAGGATACCCTTGGATTGATGCCATCAT 1137
Query 1160 GGTTCAGCTTCTGAAATGGGGTTGGATGCACCATCTAGCGCGTCACTGTGTAGCCTGTTT 1219
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1138 GGTTCAGCTTCTGAAATGGGGTTGGATGCACCATCTAGCGCGTCATTGTGTAGCCTGTTT 1197
Query 1220 TCTTACTCGTGGGGATCTGTTCATACATTGGGAACAAGGGCGTGATGTGTTTGAGAGACT 1279
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCTAACTCGTGGGGATCTGTTCATACATTGGGAACAAGGGCGTGATGTGTTTGAGAGACT 1257
Query 1280 TCTGATCGATTCAGACTGGGCAATCAACAATGGAAATTGGATGTGGTTATCATGTTCGTC 1339
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1258 TCTGATCGATTCAGACTGGGCAATCAATAATGGCAATTGGATGTGGTTATCATGTTCGTC 1317
Query 1340 GTTCTTTTACCAG 1352
|||||||||||||
Sbjct 1318 GTTCTTTTACCAG 1330
Score = 652 bits (353), Expect = 0.0
Identities = 429/463 (93%), Gaps = 15/463 (3%)
Strand=Plus/Plus
Query 1389 AAGTATGATCCTGATGGGAAGTACATTAGGCATTTTCTACCGGTACTGAAAGATATGCCA 1448
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1391 AAGTATGATCCTGATGGGAAGTACATTAGGCATTTTCTCCCGGTACTGAAAGATATGCCA 1450
Query 1449 AAGCAATATATATATGAGCCATGGACAGCACCATTGAGCGTTCAAACTAAAGCAAACTGC 1508
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1451 AAGCAGTATATATATGAGCCATGGACAGCACCAATGAGCGTTCAAACTAAAGCAAACTGC 1510
Query 1509 ATAGTCGGGAAGGACTACCCAAAGCCAATGGTATTGCACGATTCAGCAAGCAAGGAGTGC 1568
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 ATAGTAGGGAAGGACTACCCAAAGCCAATGGTATTGCACGATTCAGCAAGCAAGGAGTGC 1570
Query 1569 AAGAGGAAGATGGGTGAAGCATATGCATTGAACAAGAAGATGGATGGTAAAGTAGATGAA 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 AAGAGGAAGATGGGTGAAGCATATGCATTGAACAAGAAGATGGATGGTAAAGTAGATGAA 1630
Query 1629 GAAAATTTGAGGGATTTGAGGAGAAAGCTTCAGAAAGATGAACATGAAGAGTCCAAAATC 1688
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1631 GAAAATTTGAGGGATTTGAGGAGAAAGCTTGAGAAAGATGAACATGAAGAGTCCAAAATC 1690
Query 1689 AGGAACCAACGACCAAAACTCAAATAGGTAGAGGATTAAAAA----------CCTTTTCT 1738
|||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1691 AGGAACCAACGACCAAAACTCAAATAGGTA-AGGATTAAAAAAAAAAAAAAACCATTTCT 1749
Query 1739 GAAATTGATGAAGTGTGTATTGTTACAATAATTCTAGCTGGTATGACTTAATCATGGTTA 1798
| ||| |||||| | ||||| |||||| || | |||||| ||||||||||||||||||
Sbjct 1750 GCGATTAATGAAGAGGGTATTATTACAACAACTGTAGCTGTTATGACTTAATCATGGTTT 1809
Query 1799 -CATTTCTATTTCTATGTaaaaaaaTCTGTTATGCATCAATGT 1840
||||| |||||| ||||||||| ||||||||||| ||||||
Sbjct 1810 TCATTT--ATTTCTCTGTAAAAAA-TCTGTTATGCAACAATGT 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5