BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15630.1

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479015 jgi|Araly1|479015|fgenesh2_kg.3__1716__AT3G15630.1         710    0.0  


> Ahg479015 jgi|Araly1|479015|fgenesh2_kg.3__1716__AT3G15630.1
Length=605

 Score =  710 bits (384),  Expect = 0.0
 Identities = 431/454 (95%), Gaps = 1/454 (0%)
 Strand=Plus/Plus

Query  7    AAAATTTACAAATCCTTAATCTTTCTCTTCTTCCTAAAAACAGCTTTGAGCTTTCTCTCA  66
            ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1    AAAATTTACAAATCCATAATCTTTCTCTTCTTCCCAAAAACAGCTTTGAGCTTTCTCTCA  60

Query  67   GATAACCACATTTTACCTAACAATGGCTACAATCATCTCCTGCTCCGCTCTTTCCTCGAT  126
            ||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct  61   GATCATCACATTTTACCTAACAATGGCTACAATCATCGCCTGCTCCGCTATTTCCTCGAT  120

Query  127  CCGAGCATCTTCCGAATCGGATCCAGCCCGTAAGAAACCTGTTTCGTCGGTTTCATGGTG  186
            ||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||
Sbjct  121  CCGAGCATCTTCCGAATCGGATCCATCCCGTAAGAAACCCGTTTCATCTGTTTCATGGTG  180

Query  187  GGCTCCTCTTTTTGGCATGTCATCGGAACCTGATTACGTCAACAAAACCGTGAATCTGGA  246
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  181  GGCTCCTCTTTTTGGCATGTCATCGGAACCTGATTACGTCAACAAGACCGTGAATCTTGA  240

Query  247  ATCAGATCTGGATAAAGCTGAAAAGAGGTCTCTGCGATGTTGTCTCACGGAGGAGAAGGC  306
            |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  241  ATCAGATCTGGATAAAACTGACAAGAGGTCTCTGCGATGTTGTCTCACGGAGGAGAAAGC  300

Query  307  TAAGCAGCTGCGGAGGAAAACCGCCGAAGCTTCTACATTCCACGACGTTATGTACCATTC  366
            |||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct  301  TAAGCAGCTGCGGAGGAAAACCGCTGAAGCTTCCACGTTTCACGACGTTATGTACCATTC  360

Query  367  TGCGATCGCGTCGCGACTCGCGTCTGACGTTCGGGTCAAGAAGTAACTGGATCGGGTCAC  426
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  361  TGCGATCGCGTCGCGACTCGCGTCTGACGTTCGGGTCAAGGAGTAACTGGATCGGATCAC  420

Query  427  GGA-TCCAGAAATAATCAATAATTCGTCGAACTT  459
            ||| || |||||||||||||||||||||||||||
Sbjct  421  GGACTCTAGAAATAATCAATAATTCGTCGAACTT  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27753483576


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5