BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15650.2
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929378 jgi|Araly1|929378|scaffold_301835.1 1055 0.0
Ahg474397 jgi|Araly1|474397|fgenesh2_kg.1__4351__AT1G52700.1 660 0.0
> Ahg929378 jgi|Araly1|929378|scaffold_301835.1
Length=810
Score = 1055 bits (571), Expect = 0.0
Identities = 621/646 (96%), Gaps = 0/646 (0%)
Strand=Plus/Plus
Query 286 CAGCTCGTCTCAGCTATTGGAAAGCCTACCTCTTCCAAACATCAAATGGATTTGTCCAAC 345
|||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 163 CAGCTCTTCTCAGCTCTTGGAGAGCCTACCTCTTCCAAACATAAAATGGATTTGTCCAAC 222
Query 346 TGCTCCTTCGCGTCCTGTTTCGCTTCTCGGTGGATTTCCTTGCACTGCCTGGTTTGACGT 405
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 223 TGCTCCTTCGCGTCCTGTTTCGCTTCTGGGTGGATTCCCTTGCACTGCCTGGTTTGACGT 282
Query 406 GGGAGAAATTTCTGAGGATCTTCATGATGATATAGAAGGCTTAGATGCTTCAGCTGCACA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GGGAGAAATTTCTGAGGATCTTCATGATGATATAGAAGGCTTAGATGCTTCAGCTGCACA 342
Query 466 TATTGCTAACCTATTATCTGCTGAGCCAACAGATGTCAAAGTTGGGATAGGAGGTTTCAG 525
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 343 TATTGCTAACCTCTTATCCGCTGAACCAACAGATGTCAAAGTTGGGATAGGAGGTTTCAG 402
Query 526 TATGGGTGCAGCAATAGCTCTCTACTCCACGACGTGCTACGCTCTTGGACGTTATGGAAC 585
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 403 TATGGGTGCAGCAATAGCTCTCTACTCCACAACGTGCTACGCTCTTGGGCGTTATGGAAC 462
Query 586 CGGACATGCTTATACTATAAACCTACGAGCTACTGTAGGACTTAGCGGTTGGCTTCCTGG 645
||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 463 CGGACATCCTTATACTATTAACCTACGAGCTACTGTAGGACTTAGTGGTTGGCTTCCTGG 522
Query 646 TTGGAGGAGCTTAAGGAGCAAAATAGAAAGTTCGAATGAGGTTGCAAGGCGCGCTGCATC 705
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 523 TTGGAGGAGCTTAAGGAGCAAAATAGAAAGTTCTAATGAGGTTGCAAGGCGCGCTGCATC 582
Query 706 GATACCGATCTTACTTGCACATGGAACTTCGGACGATGTAGTTCCTTATAGATTTGGAGA 765
|||||| ||| |||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 583 GATACCAATCATACTTGCACATGGAACTTCGGATGACGTAGTACCTTATAGATTTGGAGA 642
Query 766 AAAATCTGCTCATTCACTTGCCATGGCTGGATTCCGACAAACTATGTTCAAACCATATGA 825
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 AAAATCTGCCCATTCACTTGCCATGGCTGGATTCCGACAAACTATGTTCAAACCATATGA 702
Query 826 AGGGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCTC 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 703 AGGGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGCCTC 762
Query 886 AAGGCTTGGTCTCGAGGGTTCGCGTTAAACTTTACAAGCATCTTCT 931
|||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 763 AAGGCTTGGTCTCGAGGGCTCGCGTTAAACTCTGCAAGCATCTTCT 808
Score = 279 bits (151), Expect = 2e-74
Identities = 163/168 (97%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 64 GAAAAAAGATCATTGAACAACAACAATGAGCTATTCTCGTCAAAGCATGGGTTCTGGTAG 123
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GAAAAAAGATCATT---CAACAACAATGAGCTATTCTCATCAAAGCATGGGTTCTGGTAG 57
Query 124 TAGAAGTACAAGGGGCTATGAGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TAGAAGTACAAGGGGCTATGAGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCA 117
Query 184 CCAAGCTACTATTGTTTGGTTGCACGGTCTTGGAGACAATGGCTCCAG 231
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 118 CCAAGCTACTATTGTTTGGTTGCATGGTCTTGGAGACAATGGCTCCAG 165
> Ahg474397 jgi|Araly1|474397|fgenesh2_kg.1__4351__AT1G52700.1
Length=919
Score = 660 bits (357), Expect = 0.0
Identities = 709/872 (81%), Gaps = 51/872 (6%)
Strand=Plus/Plus
Query 84 CAACAATGAGCTATTCTCGTCAAAGCATGGGTTCTGGTAGTAGAAGTACAAGGGGCTATG 143
||| |||||| || ||||||||||||||||||||||| ||||||| | ||||||| ||||
Sbjct 60 CAAAAATGAGTTACTCTCGTCAAAGCATGGGTTCTGGAAGTAGAAATGCAAGGGGATATG 119
Query 144 AGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCACCAAGCTACTATTGTTTGG- 202
| ||||||||||||||||||||||||||||| |||||||| ||||| ||| | || |||
Sbjct 120 AATTTGGAAGGACTTATGTTGTGAGGCCTAAGGGAAAGCATCAAGCCACTCTAGTCTGGC 179
Query 203 TTGCACGGTCTTGGAGACAATGGCTCCAG-A-A---T--T--TTGGCG-T-GTTCTT-T- 249
|| || |||||||| |||||||| || || | | | | |||| | | | |||| |
Sbjct 180 TT-CATGGTCTTGGTGACAATGGGTCTAGCATAAACTCCTGCTTGGTGCTTGCTCTTCTT 238
Query 250 GA-T-AAC-A-ACTTCTCAC-TTT--GGCTCT-G-TT--TCTTTCTGCAGCTCGTCTCAG 298
| | || | | | | | ||| || | || ||||| || |||| ||||||
Sbjct 239 GTCTTAAGTATAAATAT-ATGTTTTAGGAAAAAGCTTCATCTTT-TG--GCTCATCTCAG 294
Query 299 CT-ATTGGAAAGCCTAC---C-TCTTCCAAACATCAAATGGATTTGTCCAACTGCTCCTT 353
|| || ||||||| | | | ||||||||| || ||||||||||||||||| |||||||
Sbjct 295 CTCAT-GGAAAGCTTGCATGCATCTTCCAAATATAAAATGGATTTGTCCAACCGCTCCTT 353
Query 354 CGCGTCCTGTTTCGCTTCTCGGTGGATTT-CCTTGCACTGCCTGGTTTGACGT-GGGAGA 411
||||||||||| | ||| ||||||||| ||| ||||||| ||||||||||| ||| ||
Sbjct 354 CGCGTCCTGTTACAAGTCTTGGTGGATTTACCT-GCACTGCTTGGTTTGACGTTGGG-GA 411
Query 412 AATTTCTGAGGATCTTCATGATGATATAGAAGGCTTAGATGCTTCAGCTGCACATATTGC 471
||||||||| ||| |||||||||| | ||||| |||||||| |||||| ||||||||||
Sbjct 412 AATTTCTGAAGATGGTCATGATGATTTGGAAGGTTTAGATGCCTCAGCTTCACATATTGC 471
Query 472 TAACCTATTATCTGCTGAGCCAACAGATGT-CAAAGTTGGG-ATAGGAGGTTTCAGTATG 529
||| || || |||||||| ||| ||||||| ||| || ||| ||||||||||| || |||
Sbjct 472 TAATCTTTTGTCTGCTGAACCAGCAGATGTTCAA-GT-GGGCATAGGAGGTTTTAGCATG 529
Query 530 GGTGCAGCAATAGCTCTCTACTCCACGACGTGCTACGCTCTTGGACGTTATGGAACCGGA 589
|| ||||||||| ||||||||||| |||| || || |||||||||||||||||||| ||
Sbjct 530 GGAGCAGCAATATCTCTCTACTCCGCGACTTGTTATGCTCTTGGACGTTATGGAACTGGC 589
Query 590 CATGCTTATACTATAAACCTACGAGCTACTGTAGGACTTAGCGGTTGGCTTCCTGGTTGG 649
||||| ||| || |||||||||||||| |||||| || ||||| |||||||||||||||
Sbjct 590 CATGCGTATCCTTTAAACCTACGAGCTGTTGTAGGGCTCAGCGGCTGGCTTCCTGGTTGG 649
Query 650 AGGAGCTTAA---GGAGCAAAATAGAAAGTTCGA-ATGAGGTTGCAAGGCGCGCTGCATC 705
| |||||||| |||||||||||||| |||| | |||||| ||||||||| ||||| ||
Sbjct 650 AAGAGCTTAATAAGGAGCAAAATAGAATGTTC-ATATGAGGCTGCAAGGCGTGCTGCGTC 708
Query 706 GATACCGATCTTACTTGCACATGGAACTTCGGACGATGTAGTTCCTTATAGATTTGGAGA 765
| |||| ||| | ||| ||||||| || || || ||||| ||||||||||| ||||||||
Sbjct 709 GTTACCAATCATCCTTACACATGGGACATCCGATGATGTGGTTCCTTATAGGTTTGGAGA 768
Query 766 AAAATCTGCTCATTCACTTGCCATGGCTGGATTCCGACAAACTATGTTCAAACCATATGA 825
|||||||| || || |||| |||||||||||| |||||| | |||||||||||||| ||
Sbjct 769 GAAATCTGCGCAGTCTCTTGGCATGGCTGGATTTCGACAAGCCATGTTCAAACCATACGA 828
Query 826 AGGGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCT- 884
||| |||||||||||||| ||||| ||||||||| ||||||| |||||||||||| |
Sbjct 829 AGGACTTGGTCACTATACTGTTCCCAAAGAAATGAATGAGGTCGTTCACTGGCTCA-CAG 887
Query 885 CAAGGCTTGGTCTCGAGGGTTCGCGTTAAACT 916
| ||||| || || ||||| ||| | ||||||
Sbjct 888 CGAGGCTCGGGCTTGAGGGCTCGTGCTAAACT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5