BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15660.1 Length=874 Score E Sequences producing significant alignments: (Bits) Value Ahg479020 jgi|Araly1|479020|fgenesh2_kg.3__1721__AT3G15660.2 1079 0.0 > Ahg479020 jgi|Araly1|479020|fgenesh2_kg.3__1721__AT3G15660.2 Length=779 Score = 1079 bits (584), Expect = 0.0 Identities = 679/723 (94%), Gaps = 14/723 (2%) Strand=Plus/Plus Query 150 TTGAAGAAATCTGCGTGATTTAGAGATGGCGGCTTCTTTATCGAGCAGACTTATAAAAGG 209 ||||| ||||||| | |||||||||||||||||||||||||||| ||||||| | ||||| Sbjct 65 TTGAATAAATCTGAGAGATTTAGAGATGGCGGCTTCTTTATCGACCAGACTTCTTAAAGG 124 Query 210 AATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTGACGTCTGCATCAGTCTACCAAAA 269 ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 125 AATCGCTAACCTCCAAGCTGTTCGTTCTAGCAGATTGACATCTGCATCAGTCTACCAAAA 184 Query 270 TGGGATGATGAGATTTTCCTCAACAGTGCCAAGTGATTCAGATACACATGATGATTTCAA 329 ||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||| Sbjct 185 TGGGATGATGAGATTTTCCTCTACAGTTCCCAGTGATTCAGACACACATGATGATTTCAA 244 Query 330 GCCTACACAAAAAGTC-CCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAATG 388 |||||||||||||| | ||| ||| |||||||||||| || |||||||| |||||||||| Sbjct 245 GCCTACACAAAAAG-CTCCTTCCGGTTCTACGGACTCGCTCAAAGATATTGTTGAGAATG 303 Query 389 ATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTG 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 304 ATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGCG 363 Query 449 GGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAATGTTCCTATCAGTTCTAGAA 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 GGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAATGTTCCTATCAGTTCTAGAA 423 Query 509 ACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGCCACTGGCCTACGT 568 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 424 ACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCTTTCAGCCACTGGCCTACGT 483 Query 569 TTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGC 628 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 484 TTCCACAGATCTTCATAAAGGGAGAGTTCATTGGCGGCTCAGACATCATTCTTAACATGC 543 Query 629 ACAAGGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGATCCA 688 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 ACAAGGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGATCCA 603 Query 689 AAGTTTGGAAGTTATGCTGAC-GA-G--TGGAAGTTATTATGTTTTTGTTCTTTCTTTTC 744 ||| | ||||||||||||||| || | || |||||||||||||||||||||||||||| Sbjct 604 AAGGT-GGAAGTTATGCTGACTGATGAATG-AAGTTATTATGTTTTTGTTCTTTCTTTTT 661 Query 745 ATAAGAATGTCTTTTCATGTACGGTAAAATAATGTCTCAGAAACTCAAAAATCTTTGGAT 804 ||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||| Sbjct 662 ATAAGAATGTCTTTTGATGTACGGCAA--TAATGTCTCAGAAACTCAAAA-TCTTTGGAT 718 Query 805 TTCGT-ATGAATAAAAACTTTGGTAAACTAAGATAGCAAAATCAAAGAAGCCCAACGAGC 863 || || ||||| |||| |||||||||||||||||||||||| ||||||||| ||| |||| Sbjct 719 TT-GTTATGAACAAAA-CTTTGGTAAACTAAGATAGCAAAAACAAAGAAGCACAAAGAGC 776 Query 864 CTT 866 ||| Sbjct 777 CTT 779 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32366356533 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5