BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15660.1
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479020 jgi|Araly1|479020|fgenesh2_kg.3__1721__AT3G15660.2 1079 0.0
> Ahg479020 jgi|Araly1|479020|fgenesh2_kg.3__1721__AT3G15660.2
Length=779
Score = 1079 bits (584), Expect = 0.0
Identities = 679/723 (94%), Gaps = 14/723 (2%)
Strand=Plus/Plus
Query 150 TTGAAGAAATCTGCGTGATTTAGAGATGGCGGCTTCTTTATCGAGCAGACTTATAAAAGG 209
||||| ||||||| | |||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 65 TTGAATAAATCTGAGAGATTTAGAGATGGCGGCTTCTTTATCGACCAGACTTCTTAAAGG 124
Query 210 AATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTGACGTCTGCATCAGTCTACCAAAA 269
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 125 AATCGCTAACCTCCAAGCTGTTCGTTCTAGCAGATTGACATCTGCATCAGTCTACCAAAA 184
Query 270 TGGGATGATGAGATTTTCCTCAACAGTGCCAAGTGATTCAGATACACATGATGATTTCAA 329
||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||
Sbjct 185 TGGGATGATGAGATTTTCCTCTACAGTTCCCAGTGATTCAGACACACATGATGATTTCAA 244
Query 330 GCCTACACAAAAAGTC-CCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAATG 388
|||||||||||||| | ||| ||| |||||||||||| || |||||||| ||||||||||
Sbjct 245 GCCTACACAAAAAG-CTCCTTCCGGTTCTACGGACTCGCTCAAAGATATTGTTGAGAATG 303
Query 389 ATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTG 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 304 ATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGCG 363
Query 449 GGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAATGTTCCTATCAGTTCTAGAA 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAATGTTCCTATCAGTTCTAGAA 423
Query 509 ACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGCCACTGGCCTACGT 568
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 424 ACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCTTTCAGCCACTGGCCTACGT 483
Query 569 TTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGC 628
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 484 TTCCACAGATCTTCATAAAGGGAGAGTTCATTGGCGGCTCAGACATCATTCTTAACATGC 543
Query 629 ACAAGGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGATCCA 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACAAGGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGATCCA 603
Query 689 AAGTTTGGAAGTTATGCTGAC-GA-G--TGGAAGTTATTATGTTTTTGTTCTTTCTTTTC 744
||| | ||||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct 604 AAGGT-GGAAGTTATGCTGACTGATGAATG-AAGTTATTATGTTTTTGTTCTTTCTTTTT 661
Query 745 ATAAGAATGTCTTTTCATGTACGGTAAAATAATGTCTCAGAAACTCAAAAATCTTTGGAT 804
||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||
Sbjct 662 ATAAGAATGTCTTTTGATGTACGGCAA--TAATGTCTCAGAAACTCAAAA-TCTTTGGAT 718
Query 805 TTCGT-ATGAATAAAAACTTTGGTAAACTAAGATAGCAAAATCAAAGAAGCCCAACGAGC 863
|| || ||||| |||| |||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 719 TT-GTTATGAACAAAA-CTTTGGTAAACTAAGATAGCAAAAACAAAGAAGCACAAAGAGC 776
Query 864 CTT 866
|||
Sbjct 777 CTT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32366356533
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5