BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15670.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479021 jgi|Araly1|479021|fgenesh2_kg.3__1722__AT3G15670.1 1042 0.0
> Ahg479021 jgi|Araly1|479021|fgenesh2_kg.3__1722__AT3G15670.1
Length=917
Score = 1042 bits (564), Expect = 0.0
Identities = 697/761 (92%), Gaps = 10/761 (1%)
Strand=Plus/Plus
Query 265 AAGACATCTCAAACTGCCCAAGCGGCTCAGCAGAAGGCCCATGAAACGGCCCAGTCAGCA 324
||||| |||||||| |||||| | || || || ||||||||||| || |||||||||||
Sbjct 162 AAGACTTCTCAAACGGCCCAAACAGCCCAACAAAAGGCCCATGAGACAGCCCAGTCAGCT 221
Query 325 AAAGAGAAGACATCTCAAACTGCCCAAACGGCACAGCAAAAGGCCCATGAGACGACGCAA 384
||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||
Sbjct 222 AAAGATAAGACATCTCAAACTGCCCAAACGGCTCAGCAGAAGGCCCATGATACGACTCAA 281
Query 385 GCAGCAAAAGAAAAGACATCTCAAGCTGGCGACAAAGCTCGCGAGGCCAAGGACAAGGCC 444
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 282 GCAGCAAAAGACAAGACATCCCAAGCTGGCGACAAAGCTCGCGAGGCCAAGGACAAGACC 341
Query 445 GGGAGCTACTTATCGGAGACAGGCGAAGCCATAAAGAACAAGGCTCAAGACGCTGCTCAG 504
||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GGGAGCTACATGTCGGAAACAGGCGAAGCCATAAAGAACAAGGCTCAAGACGCTGCTCAG 401
Query 505 TATACAAAGGAGACGGCTCAAGGTGCGGCACAGTACACAAAGGAGACGGCTGAAGCCGGT 564
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 402 TACACAAAGGAGACGGCTCAAGGTGCGGCTCAGTACACAAAGGAGACGGCTGAAGCCGGT 461
Query 565 AGAGACAAGACGGGTGGATTCTTGAGCCAGACTGGTGAGCATGTTAAGCAAATGGCAATG 624
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 462 AGAGACAAGACCGGTGGGTTCTTGAGCCAGACCAGTGAGCATGTTAAGCAAATGGCTATG 521
Query 625 GGTGCAGCTGATGCAGTGAAGCATACTTTTGGGATGGCTAC---TGAGGAAGAAGACAAA 681
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 522 GGTGCAGCTGACGCAGTGAAGCATACTTTTGGGATGGCTACTGATGAGGAAGAAGACAAA 581
Query 682 GAGCATTATCCAGGAAGTACTACTACCACTACTGCAACTACTCGAACCACTGATCCGACT 741
||||||| ||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 582 GAGCATTTTCCAGGAAGTACTACTACCACTACTGCAAGTACCCGGACCACTGATCCGACT 641
Query 742 CATCAGACTTATCAGAGGAAGTGATGAGAAAACAAAATTGAGAACGATATGAAAGTATCt 801
||||||||||| |||||||||||| || || |||||||||||| ||||||||||| |||
Sbjct 642 CATCAGACTTACCAGAGGAAGTGA-GA-TAACCAAAATTGAGAAGGATATGAAAGTGTCT 699
Query 802 ttgtgttagttggtcttttgagttttgtgtttgt--gtttttgtaatttccgttgtgtct 859
|| |||| |||||||||||||||| |||| |||| ||||||||| |||||| | |||||
Sbjct 700 TTATGTTTGTTGGTCTTTTGAGTTCTGTG-TTGTACGTTTTTGTAGTTTCCG-T-TGTCT 756
Query 860 ttctttatggttgtggttcagctgtgtttCTTGTTGTGACGGTGATCCTGGAGACTTCTA 919
|||||| || |||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 757 TTCTTTGTGTTTGTGGTTTAGTTGTGTTTCTTGTTGTGATGGTGATCCTGGAGACTTCTA 816
Query 920 ATTTCCAGCCAATAAGTTTAGATTTGATCCTGTTACAACTTATGTGTTCTCAAATTTCTA 979
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 817 ATTTCCAGCCAATAAGTTTAGATTTGATCCCGTTACAACTTATGTGTTTTCCAATTTGTA 876
Query 980 TTTTTGTTACAATAAACAGTTATTAATACACATCATGGTCC 1020
||||||||| ||||||||||||||||||||||| | |||||
Sbjct 877 TTTTTGTTATAATAAACAGTTATTAATACACATAACGGTCC 917
Score = 422 bits (228), Expect = 3e-117
Identities = 264/281 (94%), Gaps = 4/281 (1%)
Strand=Plus/Plus
Query 69 TACACATTTGAAGAAAG--AAATGGCATCCAACCAACAGAGCTACAAAGCTGGTGAGACC 126
||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||
Sbjct 30 TACGCATTTGAAGAAAGAAAAATGGCGTCCAACCAACAGAGCTACAAGGCTGGTGAAACC 89
Query 127 AGAGGCAAGGCCCAGGAGAAGACTGGACAAGCTATGGGAACGATGAGGGACAAGGCTGAG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 AGAGGCAAGGCCCAGGAGAAGACTGGACAAGCTATGGGAACGATGAGGGACAAGGCTGAG 149
Query 187 GAGGGCCGGGACAAGACTTCTCAAACGGCCCAAACAGCCCAACAGAAGGCCCATGAGACA 246
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 150 GAGGGCAGGGACAAGACTTCTCAAACGGCCCAAACAGCCCAACAAAAGGCCCATGAGACA 209
Query 247 GCCCAGTCAGCTAAAGATAAGACATCTCAAACTGCCCAAGCGGCTCAGCAGAAGGCCCAT 306
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 210 GCCCAGTCAGCTAAAGATAAGACATCTCAAACTGCCCAAACGGCTCAGCAGAAGGCCCAT 269
Query 307 GAAACGGCCCA-GTCAGCAAAAGAGAAGACATCTCAAACTG 346
|| ||| | || | |||||||||| |||||||| ||| |||
Sbjct 270 GATACGACTCAAG-CAGCAAAAGACAAGACATCCCAAGCTG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5