BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15680.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479022 jgi|Araly1|479022|fgenesh2_kg.3__1723__AT3G15680.1 1471 0.0
> Ahg479022 jgi|Araly1|479022|fgenesh2_kg.3__1723__AT3G15680.1
Length=910
Score = 1471 bits (796), Expect = 0.0
Identities = 876/914 (96%), Gaps = 7/914 (1%)
Strand=Plus/Plus
Query 4 CATCACTCTTTCAAAGCCTCGTGTCTTGATTTCTTTCACCAAACTCATATAATCACATAT 63
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CATCACTCTTTCAAAGCCTTGTGTCTTGATTTCTTTCACTAAACTCATATAATCACATAC 60
Query 64 CTCTCCAAGTTCATCAAGAAAATAATATAAACACACACATACAAGAACTGAAGAATGAGC 123
|||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |
Sbjct 61 CTCTCCAAGTTCATCAAGAAAATAATATAAACGCACGCATACAAGCACTGAAGAATGAAC 120
Query 124 AGACCCGGAGATTGGAACTGCAGGTCATGCAGCCATCTCAACTTCCAGCGCCGTGACTCT 183
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 121 AGACCCGGAGATTGGAACTGCAGGTCATGCAACCACCTCAACTTCCAGCGCCGTGACTCT 180
Query 184 TGCCAGCGATGCGGTGACTCTCGTTCCGGCCCCGGTGGAGTTGGTGGCTTAGACTTTGGT 243
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 181 TGCCAGCGATGCGGTGACTCTCGTTCCGGCCCTGGTGGAGTCGGTGGCTTAGACTTCGGT 240
Query 244 AATTTCGGTGGCAGAGCCATGTCTGCTTTCGGATTCACCACCGGCTCCGACGTTCGTCCC 303
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTTCGGCGGCAGAGCCATGTCTGCTTTCGGATTCACCACCGGCTCCGACGTTCGTCCC 300
Query 304 GGTGATTGGTACTGCACCGTGGGAAACTGCGGGACACACAACTTCGCCAGTCGCTCCACC 363
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTGATTGGTACTGCACCGTCGGAAACTGCGGGACACACAACTTCGCCAGTCGCTCCACT 360
Query 364 TGCTTCAAATGCGGCACTTTCAAGGACGAGACCGGCGCTGGAGGCGGAGGTGGTGGCATC 423
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TGCTTCAAATGCGGCACTTTCAAGGACGAGACCGGCGCTGGAGGCGGAGGCGGTGGCATC 420
Query 424 GGCGGTCCGGCCATGTTTGACGCCGACATTATGCGGTCTAGAGTCCCCGGTAACGGTGGT 483
|| |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 421 GGTGGTCCGGCTATGTTTGACGCAGACGTTATGCGGTCTAGAGTCCCCGGTAACGGTGGT 480
Query 484 CGCTCTAGCTGGAAATCCGGCGACTGGATTTGCACTAGGATTGGTTGCAATGAGCATAAC 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGCTCCAGCTGGAAATCCGGCGACTGGATTTGCACTAGGATTGGTTGCAATGAGCATAAC 540
Query 544 TTTGCAAGCAGAATGGAATGCTTCAGGTGCAATGCACCAAGGGACTTCAGCAACAGAACC 603
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TTTGCAAGCAGAATAGAATGCTTCAGATGCAATGCACCAAGGGACTTCAGCAACAGAACC 600
Query 604 TCTTTCTAAGTTATACAAACTGCTTTTGAAGTAGCCTTGTCTCCAATTTCTTAGGCACCG 663
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTCCTAAGTTATACAAAATGCTTTTGAAGTAGCCTTGTCTCCAATTTCTTAGGCACCG 660
Query 664 TTTCGATCAATGGAAAGGAGAAGCAGGAGCAAAAGAGAGAATTAAAAGATGATAATTTTG 723
||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 661 TTTGGATCAATGGAAAGGAGAAGCAGGAGC-AAA-AGAGAACTAAAAGATGATAATTTTG 718
Query 724 TTAGATGTTGCAATGAGAGCCAATATTGTAACTTTAGCTGTCGTGCttttggatgtatta 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTAGATGTTGCAATGAGAGCCAATATTGTAACTTTAGCTGTCGTGCTTTTGGATGTATTA 778
Query 784 tccatttttattaagatttcttttcattttct---ccttaattcgtaatttttcttttgc 840
||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 779 TCCATTTTTATTAT-ATTTCTTTTC-TTTTCTTTTCCTTAATTCGTAATTTTTCTTTTGC 836
Query 841 agtttctttttaagagttttattattctAATCATTGTACGCTGCATGTCTTTCTTAAAAG 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 837 AGTTTCTTTTTAAGAGTTTTATTATTCTAATGATTGTACGCTGCATGTCTTTCTTAAAAG 896
Query 901 AAGATTCTCTTCTC 914
||||||||||||||
Sbjct 897 AAGATTCTCTTCTC 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5