BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15690.2
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479023 jgi|Araly1|479023|fgenesh2_kg.3__1724__AT3G15690.2 1759 0.0
Ahg923790 jgi|Araly1|923790|scaffold_105071.1 302 5e-81
> Ahg479023 jgi|Araly1|479023|fgenesh2_kg.3__1724__AT3G15690.2
Length=1140
Score = 1759 bits (952), Expect = 0.0
Identities = 1099/1164 (94%), Gaps = 33/1164 (3%)
Strand=Plus/Plus
Query 3 CACTCTGGTTGTATCGAACGAGCGAAACCCAACCAACGACGAGCGTTCACCTCAAATATT 62
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 CACTCTGGTTGTATCGAACGAGCGAAACCCAACCAACGACGAGCGTTAACCTCAAA-ATT 59
Query 63 TTGATTTGATCAAATCATCTCCACACTCGCCAAATCGTTGTGTCCTCGTTCATATCGTTA 122
|||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 60 TTGATTTG-----ATCATCTCCACACTCGTCAAATCG-TGTGTCCTCGTTCGTATCGTTA 113
Query 123 TCGTATCAGCTCAAAAATCTCAATCTCTCTTCCTTACATTCTTCTGTTTCTCGAATCCTT 182
||||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 114 TCGTATCAG---------------CTCT-TTCCTTACATTCTTCTGTTTCTCGAATCATT 157
Query 183 GTCTCCCTCCATGGCTTCCTGTAGCCTAGGAGTTCCTAAAATTAAAATCTCGGCAGTAGA 242
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 158 GTCTCCCTCCATGGCTTCCTGTAGCCTAGGAGTTCCTAAAATTAAAATCTCAGCAGTAGA 217
Query 243 CCTTAGTAGAGTAAGATCTGGAAGCTTACTGATACCATACAATCAAAGATCATTGCTTCG 302
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 218 CCTTAGTAGAGTAAGATCTGGAAGCTTACTGATACCATACAATCAAAAATCATTGCTTCG 277
Query 303 ACAAAGGCCAGTGAAGTACTTGAGTCTGAAGACAACATTTGGATCTGTGAAAGCTGTCCA 362
|||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 278 GCAAAGGCCGGTGAAGTACTTGAGTCTGAGGACAACGTTTGGATCTGTGAAAGCTGTCCA 337
Query 363 AGTGTCTACTGTCCCAACTGCAGAAACATCAGCTACTATAGAAGTAAAAGATTCTAAAGA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 338 AGTGTCTACTGTCCCAACTGCAGAAACATCAGCTACTATAGAAGTAAAAGATTCTGAAGA 397
Query 423 GATCAAGTCATCTCGATTAAACGCTCAGCTTGTTCCCAAGCCTTCTGAGGTGGAAGCCCT 482
|| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 398 GACCAAGTCATCTCGATTGAACGCTCAGCTCGTTCCCAAGCCCTCTGAGGTGGAAGCCCT 457
Query 483 TGTAACTGAAATATGCGATTCTTCATCAATTGCAGAGTTTGAACTGAAACTGGGGGGTTT 542
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TGTCACTGAAATATGCGATTCTTCATCAATTGCAGAGTTTGAACTGAAACTGGGGGGTTT 517
Query 543 CCGACTATATGTAGCAAGGAACATAGCTGACAATAGTAGTCTACAACCTCCGCCAACTCC 602
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 518 CCGACTATATGTAGCAAGGAACATAGCTGACAATAGTAGTCCACAACCTCCGCCAACTCC 577
Query 603 TGCTGTGA-CTGCTTCAAATGCAACTACCGAGAGTCCTGAGTCGAATGGATCAGCTTCCT 661
|||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 578 TGCTGT-AGCTGCTTCAAATGCAACTACCGAGAGTCCTGATTTGAATGGATCAGCTTCCT 636
Query 662 CTACTTCACTGGCTATCTCAAAACCAGCATCGTCAGCCGCTGATCAGGGTTTGATGATTC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CTACTTCACTGGCTATCTCAAAACCAGCATCGTCAGCCGCTGATCAGGGTTTGATGATTC 696
Query 722 TCCAATCTCCAAAAGTAGGGTTCTTCAGGAGATCCAAAACCATAAAGGGTAAACGCCTGC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TCCAATCTCCAAAAGTAGGGTTCTTCAGGAGATCCAAAACCATAAAGGGTAAACGCCTGC 756
Query 782 CTTCGTCTTGTAAAGAGAAAGACCAAGTGAAAGAAGGTCAAATTCTGTGCTACATTGAAC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CTTCGTCTTGTAAAGAGAAAGACCAAGTGAAAGAAGGTCAAATTCTGTGCTACATTGAAC 816
Query 842 AACTCGGTGGCCAATTTCCAATCGAGTCTGATGTTACCGGCGAGGTAGTCAAGATACTCC 901
|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 817 AACTCGGTGGCCAATTTCCAATCGAGGCCGATGTTACCGGCGAGGTAGTCAAAATACTCC 876
Query 902 GAGAAGATGGAGAGCCTGTAGGATACAATGATGCTCTCATCTCCATCCTTCCATCCTTCC 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 877 GAGAAGATGGAGAGCCTGTAGGATACAATGATGCTCTCATCTCCATCCTTCCATCCTTTC 936
Query 962 CTGGGATCAAGAAGCTTCAGTAAAACCAAATTCGAGCTGGTTTTGAGTTATGACACTGTG 1021
| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 937 CGGGGATCAAGAAGCTTCAGTAAAACCAAATTCGAGCTGGTTTTGAGTTATGATAATGTT 996
Query 1022 CCTTGTGTATGCTTTTAGATAAAGAAACTTCATTCATATTTGTATT-TGT--CT-TTT-G 1076
||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||| |
Sbjct 997 CCTTGTGTATGCTTTTAGACAAAGAAACTTCATTCATATTTGTATTATGTTTCTCTTTTG 1056
Query 1077 CTTGTATGAAAGTTCTTCTTTAAGACT-CTTTTATTCTGTATGCTTTTTCTT-ATATATA 1134
|||||||||||||||||| |||||||| |||| |||||||||| ||||| || |||||||
Sbjct 1057 CTTGTATGAAAGTTCTTCCTTAAGACTGCTTT-ATTCTGTATGTTTTTTTTTTATATATA 1115
Query 1135 AAAACATTATGGTAtttttttttA 1158
|||||||||||||| |||||||||
Sbjct 1116 AAAACATTATGGTAGTTTTTTTTA 1139
> Ahg923790 jgi|Araly1|923790|scaffold_105071.1
Length=873
Score = 302 bits (163), Expect = 5e-81
Identities = 256/299 (86%), Gaps = 13/299 (4%)
Strand=Plus/Plus
Query 696 AGCCGCTGATCAGGGTTTGA-TGATTCTCCAATCTCCAAAAGTAGGGTT-CTTCAGGAGA 753
||| |||||||||||||| | |||||||||||||||||| || |||| |||||||||
Sbjct 562 AGCTGCTGATCAGGGTTT-AGTGATTCTCCAATCTCCAACGGT-CGGTTATTTCAGGAGA 619
Query 754 TCCAAAACCATAAAGGGTAAACGC-CTGCCTTC-GTCTTGTAAAGAGAAAGACCA-AGTG 810
||||| |||||||| || |||||| || ||| | || |||||||||||||| || ||||
Sbjct 620 TCCAAGACCATAAAAGGCAAACGCACT-CCTACAATC-TGTAAAGAGAAAGA-CATAGTG 676
Query 811 AAAGAAGGTCAAATTCTGTGCTACATTGAACAACTCGGTGGCCAATTTCCAATCGAGTCT 870
|||||||||||| |||| |||||||| |||||||||||||||||| | ||| | ||||||
Sbjct 677 AAAGAAGGTCAAGTTCTATGCTACATCGAACAACTCGGTGGCCAAATCCCAGTTGAGTCT 736
Query 871 GATGTTACCGGCGAGGTAGTCAAGATACTCCGAGAAGATGGAGAGCCTGTAGGATACAAT 930
|||||| |||| ||| | ||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 737 GATGTTTCCGGTGAGATTGTCAAAATACTCCGCGAAGATGGCGAGCCTGTAGGATACAAT 796
Query 931 GATGCTCTCATCTCCA-TCCTTCCATCCTTCCCTGGGATCAAGAAGCTTCAGTAA-AAC 987
|||||||||||| | | | ||||| || || ||||| |||||||||||||||||| |||
Sbjct 797 GATGCTCTCATCAC-AGTTCTTCCTTCATTTCCTGGCATCAAGAAGCTTCAGTAAGAAC 854
Score = 291 bits (157), Expect = 1e-77
Identities = 404/519 (78%), Gaps = 33/519 (6%)
Strand=Plus/Plus
Query 184 TCTCCCTCCATGGCTTCCTGTAGCCTAGGAGTTCCTAAAATTAAAATCTCGGCAGTAGAC 243
||| |||||||| |||||||||| |||||| ||||| | ||| ||| || ||| | |
Sbjct 14 TCTTCCTCCATGAATTCCTGTAGCTTAGGAGCTCCTAGAGTTAGAATTTCTGCAACA-AG 72
Query 244 CTT-AGTAGAGTAAGATCTGGAAGCTTACTGATA-CCATACAATCAAAGATCATTGCT-T 300
|| |||||| |||||| ||||| ||| |||||| ||| ||||||||||| | || | |
Sbjct 73 TTTCAGTAGATTAAGATGTGGAAACTTGCTGATACCCA-ACAATCAAAGA-C-TTTTTAT 129
Query 301 CGA-CAAAG-GCCAGTGAAGTACT-TGAGTCTGAAGACAAC-A-TTTG-GATCTGTGAAA 354
|| ||||| ||| | ||| | | ||| || || ||| || | | || |||||||||||
Sbjct 130 TGACCAAAGCCCCA-TCAAG-AATCTGACTCAGAGGACGACGACTCTGCGATCTGTGAAA 187
Query 355 GCTGTCCAAGTGTCTACTGTCCCAACTGCAGAAACATC-AGCTACTATAGAAGTAAAAGA 413
||| ||||| |||||||||||||| ||||||||||| | ||||| | ||| ||| ||||
Sbjct 188 GCTATCCAATTGTCTACTGTCCCACCTGCAGAAACA-CAAGCTATTGCAGACGTAGAAGA 246
Query 414 TTCTAAAGAGATCAAGTCATCTCGAT-TAAACGCTCAGCTTGTTCCCAAGC-CTTCTGAG 471
|||| |||||| ||| ||| || | | | || |||||||| ||||||| | | ||||||
Sbjct 247 TTCTGAAGAGACCAAATCAACT-GTTGTGAATACTCAGCTTATTCCCAA-CTCCTCTGAG 304
Query 472 GTGGAAGCCCTTGTAACTGAAATATGC-GATTCTTCATCAATTGCAGAGTTTGAACTGAA 530
||| |||| ||| | | ||||||| | ||||| |||||||||||||||||||||||||
Sbjct 305 GTGAAAGCACTTATCAGTGAAATA-ACTGATTCCACATCAATTGCAGAGTTTGAACTGAA 363
Query 531 ACTGGGGGGTTTCCGACTATATGTAGCAAGGAACAT-AGCTGAC-AATAGTAGTCTACAA 588
|||||| |||||||| ||||||||||||||||| || ||||||| || ||||||| ||
Sbjct 364 ACTGGGAGGTTTCCGCCTATATGTAGCAAGGAA-ATTAGCTGACCAA-AGTAGTCCACCG 421
Query 589 CCTCCGCCAACTCCTGC-TGTGACTGCTTCAAATGCAACTACC-GAGAGTCCTGAGT-CG 645
|||| || || ||| || |||| |||| ||| |||||| || ||| | | | | |
Sbjct 422 CCTCAGCAAATTCC-GCCTGTGGTTGCTGCAAGCGCAACT-CCTGAGGGGGTTCA-TACA 478
Query 646 AATGGATCAGCTTCCTCTACTTCACTGGCTATCTCAAAA 684
||||| ||||| | ||| | ||| |||||||| |||||
Sbjct 479 AATGGCTCAGCCACTTCTTCGTCATTGGCTATCACAAAA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5