BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15700.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904514 jgi|Araly1|904514|Al_scaffold_0003_1642 1759 0.0
> Ahg904514 jgi|Araly1|904514|Al_scaffold_0003_1642
Length=1125
Score = 1759 bits (952), Expect = 0.0
Identities = 1071/1129 (95%), Gaps = 5/1129 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGATTTCAAGAGTATGGTGACACGATGCATCTACGTCGGAAAAGAGAACGAT 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAAAGATTTCAAGAGTATGGTGACACGATGCATCTACGTAGGAAAAGAGAACGAT 60
Query 61 AACGTGAAGAAGCTGAAAACCGCTACAGAGGAGCTCAAAGATTTACGCAACATTGTGATG 120
||||||| ||| ||||||||||| || ||||||||||| ||||||||||||| |||||||
Sbjct 61 AACGTGACGAAACTGAAAACCGCGACGGAGGAGCTCAAGGATTTACGCAACAATGTGATG 120
Query 121 AAAAGGGTCAAAATGTATGAAGACCAACAGAAGCTGAAGCGGCTCGAGAAAGTCCAAGTC 180
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 121 AAAAGGGTCAAAATGTATGAAGACCAGCAGAAGCTGAAGCGTCTCGAGAAAGTCCAGGTC 180
Query 181 TGGCTTAGACAAGCCGATGTAGCGATCAAAGAAGCAGAAGAAATGTTGATAACGTTGATG 240
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 181 TGGCTTAGACAAGCCGATGTAGCGATCAAAGAAGCAGAAGAAATTTTGATAGCGATGATG 240
Query 241 TCTTCCTCTTCTTCTAATGGATCGAGCATGATGAGTTTTCACAAGCTGGACAAGAAGCTT 300
||||| |||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 241 TCTTCTTCTTCTTCAAATGGATCAAGCATGATGAGTTGTCACAAGATGGACAAGAAGCTT 300
Query 301 TGCAAGAAGCTGAAAGAGGTTCAGGAGATAAAGAGCAGAGGAACATTCGATGTGGTGGTT 360
||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 301 TGCAAGAAGCTGAAAGAGGTTAATGAGATAAAGAGTAGAGGAACATTCGATGTGGTGGTT 360
Query 361 GAGAATAGTGGCATTGGTAGTGGATCGATGATGATTTCGAATGTTGATAGAGATGATCAG 420
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GAGAATAGTGGCATT-G--GTGGATCGATGATGATTTCGACCGTTGATAGAGATGATCAG 417
Query 421 ACGGTTGGGTTGGAGGCGGTTTCCGGGCTAGTGTGGAGGTGTATGACGGTGGATAACACC 480
|||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 418 ACGGTTGGATTGGAGGCGGTTTCGGGGCTAGTGTGGCGGTGTATGACGGTGGATAACACC 477
Query 481 GGGATTATTGGGTTGTACGGCGTGGAAGGTGTTGGGAAGACGACGGTGTTGACTCAGGTA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGGATTATTGGGTTGTACGGCGTGGAAGGTGTTGGGAAGACGACGGTGTTGACTCAGGTC 537
Query 541 AACAACAGGTTGCTTCAGCACAAGTTAAATGGGTTTGACTTTGTGATTTGGGTGTTTGTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AACAACAGGTTGCTTCAGCACAAGTTAAATGGGTTTGACTTTGTGATTTGGGTGTTTGTG 597
Query 601 TCCAAGAATGTGAATCTTGAAAAGATTCAGGACACGATCCGAGAGAAGATAGGGTTTCTT 660
||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 598 TCCAAGAATCTGAATCTTGAAAGGATTCAGGACACTATCCGAGAGAAGATAGGGTTTCTT 657
Query 661 GATAGGTCGTGGATGAGCAAGACAGAGGAAGAGAAAGCCGGTAAGATCTTCGAGATACTT 720
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GATAGGTTGTGGACGAACAAGACAGAGGAAGAGAAAGCCGGTAAGATCTTCGAGATACTT 717
Query 721 AGCAAGAGACGATTCGCTTTATTCCTCGATGACGTTTGGGAGAAAGTCGATCTAGTGAAA 780
||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 718 AGCAAAAGACGATTCGCTTTGTTCCTTGACGACGTTTGGGAGAAAGTCGATCTAGTGAAA 777
Query 781 GCTGGTGTGCCGCCTCCGGATGGACTGAACAGG-TCTAAGATCGTGTTCACAACCTGTTC 839
||||||||||| || |||||||||| |||| || || ||||||||||| |||||||||||
Sbjct 778 GCTGGTGTGCCACCGCCGGATGGACAGAAC-GGATCAAAGATCGTGTTTACAACCTGTTC 836
Query 840 GGACGAGGTTTGTCAAGAAATGGGAGCACAAACTAAGATCAAAATGGAGAAGCTGCCATG 899
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGACGAGGTTTGTCGGGAAATGGGAGCACAAACTAAGATCAAAATGGAGAAGCTGCCATG 896
Query 900 GGAGAGAGCTTGGGACTTGTTTAAGATGAATGCTGGAGAAGAGATAGTGAAGAGCCACCC 959
|||||||||||||||||||||||||| |||||| |||||||| | |||||||||||||||
Sbjct 897 GGAGAGAGCTTGGGACTTGTTTAAGAAGAATGCGGGAGAAGATACAGTGAAGAGCCACCC 956
Query 960 GGACATAACCAAAGTTGCTCAAGAGGTTGCAGCCAAGTGTGATGGCCTCCCGCTGGCTCT 1019
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 957 GGACATAACCAAAGTTGCTCAAGAGGTTGCAGCCAAGTGCGATGGCCTCCCGCTGGCTTT 1016
Query 1020 GGTCACAATTGGCCGAGCCATGGCCTCTAAGAAAACACCTCAGGAATGGCGTGACGCTTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGTCACAATTGGCCGAGCCATGGCCTCTAAGAAAACACCTCAGGAATGGCGTGACGCTTT 1076
Query 1080 GTACATCTTGAGTACCTCTCCTCCTAATTTCTCAGGTCCAATTCTATAA 1128
|||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1077 GTACATCTTGAGTAACTCTCCTCCTAATTTCTCAGGTCCAATTCCATAA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5