BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15710.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479026 jgi|Araly1|479026|fgenesh2_kg.3__1727__AT3G15710.1 1142 0.0
Ahg474386 jgi|Araly1|474386|fgenesh2_kg.1__4340__AT1G52600.1 514 4e-145
> Ahg479026 jgi|Araly1|479026|fgenesh2_kg.3__1727__AT3G15710.1
Length=817
Score = 1142 bits (618), Expect = 0.0
Identities = 756/818 (92%), Gaps = 27/818 (3%)
Strand=Plus/Plus
Query 5 AAATCAAATCTGTGTTTCATTCTCTTCTCCACTGAAACGCGTTTGAAGGAGAAGGGTCAA 64
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCAAATCTGTGTATCTTTCTCTTCTCCACTGAAACGCGTTTGAAGGAGAAGGGTCAA 60
Query 65 AGGGATCTGATCCTATCACTTTCGCTGGGAAAAAC-ACGAAATCGAAGGAAGAATCAATC 123
||||||||||| | |||| ||| | || | | ||||| |||||||||| ||||
Sbjct 61 AGGGATCTGATTCAATCA-TTT---T-GG-----CTA-GAAATTGAAGGAAGAA-GAATC 108
Query 124 ATGGGTTTCATCGGAGAAACTGTAGATTCCATCAAATCTATCAAGATCCGTCAAG-TTCT 182
||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 109 ATGGGTTTCATTGGAGAAACTGTAGATTCCATTAAATCTATCAAGATCCGTC-AGCTTCT 167
Query 183 CACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATT 227
Query 243 GATATGTGTCACTGGCAGTGAATCACCAGTGGTTGTTGTTCTCTCTGAAAGTATGGAACC 302
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 228 GATATGTGTCACTGGCAGTGAATCACCTGTGGTTGTTGTTCTCTCAGAAAGCATGGAACC 287
Query 303 TGGCTTTCAGAGAGGAGATATATTGTTCTTGCGGATGACTGATGAGCCTATTCGAGCAGG 362
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 288 TGGCTTTCAGAGAGGGGATATATTGTTCTTGCGGATGACCGATGAGCCTATTCGAGCAGG 347
Query 363 CGAGATTGTTGTGTTCAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAGCAATCAA 422
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CGAGATTGTTGTTTTTAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAGCAATCAA 407
Query 423 AGTTCATGAGAGAGGAGATACTAAAGCAGTTGATGTTCTAACAAAAGGTGACAACAATGA 482
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 408 AGTTCATGAGAGGGGAGATACTAAAGAAGTTGATGTTCTAACAAAAGGTGACAACAATGA 467
Query 483 CATTGATGACATTGGTCTCTATGCTGAAGGACAGCTTTGGCTTCACAGGCATCATATCAT 542
|||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 468 CATTGATGACATTGGTCTCTATGCGGAAGGACAACTTTGGCTTCATAGGCACCATATCAT 527
Query 543 GGGCAGAGCTGTTGGATTCTTGCCTTATGTTGGATGGGTTACTATTATCATGACAGAAAA 602
||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 528 GGGCAGAGCTGTTGGGTTCCTGCCTTATGTTGGATGGGTGACTATTATCATGACAGAAAA 587
Query 603 GCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCGAAAGA 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 588 GCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCCAAAGA 647
Query 663 CTAAGACTACATAACAAG--CTGGTCGTTGGTAAGGAGGTAGCTTCTGCAACGCTCGGGT 720
||||||||||| || ||| |||||| ||||||| || |||||||||||||||||||| |
Sbjct 648 CTAAGACTACAAAAAAAGAGCTGGTCTTTGGTAAAGAAGTAGCTTCTGCAACGCTCGGTT 707
Query 721 CATCATCTTT-G-TAGCCATCATCTTTGAAACTGTAGAATCATATAAACCTCAACTTATA 778
|||||||||| | | | | | | ||| |||||||||||||||||||||||||| |||||
Sbjct 708 CATCATCTTTCGGT-G--A-C-T-TTT-AAACTGTAGAATCATATAAACCTCAATTTATA 760
Query 779 ATTATAGACACTTTTATCTTTAAATCAGCTACG-TTTT 815
|||||| |||||||| |||||||| |||||||| ||||
Sbjct 761 ATTATAAACACTTTTCTCTTTAAAACAGCTACGGTTTT 798
> Ahg474386 jgi|Araly1|474386|fgenesh2_kg.1__4340__AT1G52600.1
Length=727
Score = 514 bits (278), Expect = 4e-145
Identities = 454/538 (84%), Gaps = 16/538 (3%)
Strand=Plus/Plus
Query 124 ATGGGTTTCATCGGAGAAACTGTAGATTCCATCAAATCTA-TCAAGATCCGTCAAG-TTC 181
||||||| |||||||||||||||||||| |||||||||| || ||||||||| || ||
Sbjct 121 ATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTC-AGATCCGTC-AGCTTT 178
Query 182 TCACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCAT 241
||||||| || |||| ||| || ||||| ||||||||||| ||||| || ||||| || |
Sbjct 179 TCACTCAAGCGATCAGTCTAGGGATGATTGTTACATCTGCTTTGATCATATGGAAAGCTT 238
Query 242 TGATATGTGTCACTGGCAGTGAATCACCAGTGGTTGTTGTTCTCTCTGAAAGTATGGAAC 301
|||| ||||||||||| |||||||| || ||||| |||||||| |||| ||| |||||||
Sbjct 239 TGATGTGTGTCACTGGAAGTGAATCTCCGGTGGTGGTTGTTCTTTCTGGAAGCATGGAAC 298
Query 302 CTGGCTTTCAGAGAGGAGATATATTGTTCTTGCGGATGACTGATGAGCCTATTCGAGCAG 361
|||| ||| |||| || |||||||||||||||| |||| | | || |||||||||||||
Sbjct 299 CTGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAGGACCCTATTCGAGCAG 358
Query 362 GCGAGATTGTTGTGTTCAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAG-CAATC 420
|||| |||||||| || | ||||||||||||||| |||||||| || ||||| | | ||
Sbjct 359 GCGAAATTGTTGTTTTTAATGTTGATGGTCGTGATATTCCCATCGTCCATCGTGTC-ATT 417
Query 421 AAAGTTCATGAGAGAGG-AGATACTA-AAGCAGTTGATGTTCTAACAAAAGGTGACAACA 478
|| ||||| || || || | |||| | || |||||||||| |||||||||||||||| |
Sbjct 418 AAGGTTCACGAAAG-GGAAAATAC-AGGAGAAGTTGATGTTTTAACAAAAGGTGACAATA 475
Query 479 A-TGACATTGATGACATTGGTCTCTATGCTGAAGGACAGCTTTGGCTTCA-CAGGCATCA 536
| | | ||||||| ||| |||||||||||||||||||||||||| | | |||||
Sbjct 476 ACT-ATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATC-GACATCA 533
Query 537 TATCATGGG-CAGAGCTGTTGGATTCTTGCCTTATGTTGGATGGGTTACTATTATCATGA 595
||| ||||| | | ||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 534 TATAATGGGTC-GTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGA 592
Query 596 CAGAAAAGCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAAC 653
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 593 CAGAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAAC 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5