BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15720.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479028 jgi|Araly1|479028|fgenesh2_kg.3__1729__AT3G15720.1 2097 0.0
> Ahg479028 jgi|Araly1|479028|fgenesh2_kg.3__1729__AT3G15720.1
Length=1441
Score = 2097 bits (1135), Expect = 0.0
Identities = 1344/1445 (93%), Gaps = 14/1445 (1%)
Strand=Plus/Plus
Query 1 AAAGCCTTCGCTTCAACAACATTTTTTC-TTTAGTCGTAAACATATTCATTCATGATTTT 59
|||||||| ||||||||||||||||||| |||||| |||||| | | |||||||| |||
Sbjct 1 AAAGCCTTAGCTTCAACAACATTTTTTCTTTTAGTTGTAAAC--A-T-ATTCATGA-TTT 55
Query 60 AACGCTTTTTCTTCAAAATATATGAAGAAGAAGACTTGGTTCTTGAATTTCTCACTGTTC 119
|| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 56 GACTCTTTTTCTCCAAAATATATGAAGAAGAAGACCTGGTTCTTGAATTTCTCACTGTTC 115
Query 120 TTTCTTCAAATCTTCACATCTTCGAATGCATTGGATGTTACTCAATTCGGAGCGGTTGGA 179
|||| ||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||
Sbjct 116 ATTCTCCAAATCTTCACATTTTCAAATGCATTGGATGTTACTCAATTAGGAGCGATTGGT 175
Query 180 GATGGAGTTACAGACGATTCACAGGCGTTCTTGAAAGCTTGGGAAGCTGTGTGTAGCGGA 239
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 176 GATGGAGTTACAGACGATTCGCAGGCGTTCTTGAAAGCTTGGGAAGCTGTCTGTAGCGGA 235
Query 240 ACAGGAGATGGGCAGTTTGTCGTTCCGGCAGGGATGACATTTATGTTACAGCCCCTGAAG 299
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 ACAGGAGATGGGCAGCTTGTCGTTCCGGCAGGGATGACATTTCTGTTACAGCCCCTGAAG 295
Query 300 TTTCAAGGGTCTTGCAAATCCACCCCTGTTTTTGTTCAGATGTTAGGCAAGCTGGTTGCA 359
|||||||| ||||||||||| |||| ||||||||||||| |||||||| |||||||||
Sbjct 296 TTTCAAGGTTCTTGCAAATCGGCCCCAATTTTTGTTCAGATATTAGGCAATCTGGTTGCA 355
Query 360 CCGAGTAAAGGAAATTGGAAAGGGGACAAAGATCAATGGATTCTTTTTACAGACATTGAA 419
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 TCGAGTAAAGGAAATTGGAAAGGAGACAAAGATCAATGGATTCTTTTTACAGACATTGAA 415
Query 420 GGACTTGTGATTGAAGGTGACGGTGAAATTAACGGCCAGGGTTCGAGCTGGTGGGAACAC 479
||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||
Sbjct 416 GGACTTGTGATTGAAGGTGGCGGTGAAATCAATGGCCAGGGTTCGAGTTGGTGGGAACAC 475
Query 480 AAAGGCTCTAGACCTACCGCATTGAAGTTCAGGAGCTGCAACAACCTTAGATTGAGTGGG 539
|||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 476 AAAGGCTCAAGACCTACCGCGTTGAAGTTCAAGAGCTGCAACAACCTTAGATTGAGTGGG 535
Query 540 TTAACGCATTTAGATAGTCCAATGGCTCACATTCACATAAGCGAGTGCAACTATGTGACC 599
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 536 TTAACGCATGTAGATAGTCCAATGGCTCACATTCACATAAACGATTGCAACTATGTGACC 595
Query 600 ATCTCAAGCCTACGAATAAATGCACCTGAATCAAGTCCTAACACCGATGGAATCGACGTA 659
|||||||| ||||| |||||||| || |||||||||||||| || |||||||||||||||
Sbjct 596 ATCTCAAGTCTACGGATAAATGCGCCGGAATCAAGTCCTAATACTGATGGAATCGACGTA 655
Query 660 GGGGCTTCATCCAACGTTGTCATCCAGGATTGCATCATCGCAACCGGTGATGATTGCATT 719
|| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 656 GGCTCTTCATCCAACGTTGTCATCCAGGATTGCGTCATCGGAACCGGTGATGATTGCATT 715
Query 720 GCGATTAATTCGGGGACGTCTAACATCCACATTTCCGGTATAGATTGCGGACCAGGCCAT 779
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 716 GCGATTAATTCGGGGACGTCTAACATCCGGATTTCCGGTATAGATTGCGGACCAGGCCAT 775
Query 780 GGGATAAGCATAGGAAGCTTGGGAAAAGATGGAGAGACAGCTACAGTGGAGAATGTATGT 839
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 776 GGAATAAGCATAGGAAGCTTGGGAAAAGATGGGGAGACAGCTACAGTGGAGAATGTATGT 835
Query 840 GTCCAAAACTGTAACTTTAGAGGAACTA-TGAATGGAGCTCGGATCAAAACTTGGCAGGG 898
|||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||
Sbjct 836 GTCCAAAACTGTAACTTTAGAGGAACTACT-AATGGTGCTCGGATCAAAACCTGGCAGGG 894
Query 899 CGGATCGGGTTACGCGAGAATGATTACTTTCAATGGAATTACTCTAGACAATGTTGAAAA 958
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 895 CGGATCGGGTTACGCGAGGATGATTACCTTCAATGGAATTACTCTAGATAATGTTGAAAA 954
Query 959 TCCAATCATAATCGATCAGTTCTATAACGGTGGCGATTCCGATAATGCCAAAGATCGTAA 1018
||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||| |||
Sbjct 955 TCCAATCATAATCGATCAGCTCTATAACGGTGGAGATTCTGATAAAGCCAAAGATCATAA 1014
Query 1019 GTCGTCGGCAGTGGAAGTGAGCAAAGTGGTGTTTAGTAATTTCATTGGGACGTCAAAGTC 1078
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 1015 GTCGTCGGCAGTGGAAGTGAGCAAAGTGGTGTATAGCAATTTCATTGGGACGTCGAAGTC 1074
Query 1079 AGAGTACGGTGTTGACTTCCGATGCAGCGAGAGAGTTCCATGCACAGAGATTTTCTTGAG 1138
||||||||| ||||||||| |||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1075 AGAGTACGGCGTTGACTTCAGATGCAGCGAGACAGTACCATGCACCGAGATTTTCTTGAG 1134
Query 1139 AGACATGAAAATAGAAACGGCATCATCAGGATCAGGACAAGTCGCACAAGGACAGTGTTT 1198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGACGTGAAAATAGAAACGGCATCATCAGGATCAGGACAAGTCGCACAAGGACAGTGTTT 1194
Query 1199 AAACGTGAGAGGTGCGTCTACAATTGCTGTACCAGGTCTAGAATGTTTAGAACTTTCCAC 1258
|||||||||||||| ||| || |||||||||||||||||||||| |||| ||||||||
Sbjct 1195 AAACGTGAGAGGTGTGTCCACGCTTGCTGTACCAGGTCTAGAATGCTTAGCCCTTTCCAC 1254
Query 1259 AGATATGTTTTCATCGGCGCAATTGCTGGAACAAACTTGCATGTCGGCACAATCAGTGCA 1318
||||||| | |||||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 1255 AGATATGCTGTCATCGGCGCAATTGCCGGAACAAACTTGCATGTTGGCACAGTCAGTGCA 1314
Query 1319 ACCAAGAACAACAACACAACCGATGCAAGATCCAATATGGGTTTTTCAAAGCAGAGGGAA 1378
||||||||||||| || | |||||||||||||||||||||| |||| |||||||||||||
Sbjct 1315 ACCAAGAACAACA-CA-A-CCGATGCAAGATCCAATATGGGATTTTGAAAGCAGAGGGAA 1371
Query 1379 ACAACTTAGAGTTTACAATATTGCCATATTAGTTTCATTTATCTCTTTGGTTACATATAT 1438
|| |||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||
Sbjct 1372 ACGACTTAGAGTTTACAAT---GCCGTATTAGTTTCATTTGTCTCTTTGGTTACGTATAT 1428
Query 1439 TTTAG 1443
|||||
Sbjct 1429 TTTAG 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5