BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15730.1
Length=2810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479029 jgi|Araly1|479029|fgenesh2_kg.3__1730__AT3G15730.1 4466 0.0
Ahg914427 jgi|Araly1|914427|Al_scaffold_0001_4681 2106 0.0
> Ahg479029 jgi|Araly1|479029|fgenesh2_kg.3__1730__AT3G15730.1
Length=2782
Score = 4466 bits (2418), Expect = 0.0
Identities = 2669/2790 (96%), Gaps = 17/2790 (1%)
Strand=Plus/Plus
Query 14 CACGGACCAGATCCCGAATTCTTCTTCTGACCACCGAACGATTGAGTTTCTCCGATCAGA 73
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1 CACGGACCAGATCCCGAATTCTTCATCTGACCACCGACCGATTGAGTTTCTCCGATCAGA 60
Query 74 TCTCAGTTTCT-GGGAATAATTCGAAGTGAAAAAATGGCGCAGCATCTGTTGCACGGGAC 132
||||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCTCAGTTTCTGGGGAA-AATTTGAAGTGAACAAATGGCGCAGCATCTGTTGCACGGGAC 119
Query 133 TTTACATGCTACCATCTATGAAGTTGATGCCCTCCATGGTGGTGGTGTTAGGCAAGGCTT 192
||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 120 TTTACATGCGACAATCTATGAAGTTGATGCCCTCCATGGTGGTGGAGTCAGGCAAGGCTT 179
Query 193 CCTTGGCAAGATTCTGGCAAATGTAGAAGAGACGATTGGTGTTGGTAAAGGAGAAACACA 252
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 180 CCTTGGCAAGATTCTGGCAAATGTAGAAGAGACGATTGGTGTTGGCAAAGGAGAAACGCA 239
Query 253 GTTGTATGCGACGATTGATCTGCAAAAAGCTAGAGTTGGGAGAACCAGGAAGATCAAAAA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTGTATGCGACGATTGATCTGCAAAAAGCTAGAGTTGGGAGAACCAGGAAGATCAAAAA 299
Query 313 TGAACCTAAGAACCCAAAGTGGTATGAGTCGTTTCATATTTACTGTGCTCACTTGGCTTC 372
|||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 TGAACCTACGAACCCAAAGTGGTATGAATCGTTTCATATTTACTGTGCCCACTTGGCTTC 359
Query 373 TGATATCATCTTCACTGTTAAAGATGATAATCCCATTGGAGCTACCCTTATCGGAAGAGC 432
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 360 TGATATCATCTTCACTGTTAAAGATGATAATCCCATTGGGGCCACCCTTATCGGAAGAGC 419
Query 433 TTACATTCCTGTTGATC-AAGTCATTAACGGCGAGGAAGTGGATCAGTGGGTTGAGATCT 491
|||||||||||||| | ||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 420 ATACATTCCTGTTGA-CGAAGTCGTTAATGGCGAGGAAGTGGATCGGTGGGTTGAGATCT 478
Query 492 TGGATAATGACAGAAACCCTATTCAGGGAGGATCAAAGATTCATGTCAAGCTTCAATATT 551
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 479 TGGATAATGACAGAAACCCCATCCAGGGAGGATCAAAGATTCATGTCAAGCTCCAATATT 538
Query 552 TCCATGTTGAGGAGGATCGTAACTGGAACATGGGTATCAAAAGTGCCAAGTTCCCTGGAG 611
|||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||||
Sbjct 539 TCCATGTTGAGGAGGATCGTAACTGGAATAAGGGTATCAAAAGTGCTAAATTCCCTGGAG 598
Query 612 TGCCATACACATTCTTCTCGCAGAGACAAGGCTGCAAAGTTTCTCTGTACCAAGATGCTC 671
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 TTCCATACACGTTCTTCTCGCAGAGACAAGGCTGCAAGGTTTCTCTGTACCAAGATGCTC 658
Query 672 ATATTCCAGACAACTTTGTCCCTAGAATTCCTCTCGCTGGAGGGAAGAACTATGAGCCTC 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATATTCCAGACAACTTTGTCCCTAGAATTCCTCTCGCTGGAGGGAAGAACTATGAGCCTC 718
Query 732 AAAGATGTTGGGAGGATATTTTTGATGCTATTAGCAATGCAAAACACTTGATCTACATTA 791
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 719 AAAGATGTTGGGAGGATATTTTCGATGCCATTAGCAACGCAAAACACTTGATCTACATTA 778
Query 792 CTGGTTGGTCTGTTTACGCTGAGATTGCTTTAGTGAGGGACTCGAGGAGGCCTAAGCCTG 851
| |||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |
Sbjct 779 CGGGTTGGTCTGTTTACGTTGAGATTGCCTTAGTGAGAGACTCGAGGAGGCCTAAGCCAG 838
Query 852 GAGGTGATGTGACCATTGGTGAGCTACTCAAGAAGAAGGCTAGTGAAGGTGTCAGGGTTC 911
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 839 GAGGAGATGTGACCATTGGTGAGCTTCTCAAGAAGAAGGCTAGTGAAGGTGTTAGGGTTC 898
Query 912 TTTTGCTTGTTTGGGATGACAGAACTTCTGTTGATGTGCTGAAGAAAGATGGGCTCATGG 971
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 899 TTTTACTTGTTTGGGATGACAGAACCTCTGTTGATGTCCTGAAGAAAGATGGGCTCATGG 958
Query 972 CTACTCATGATGAAGAGACCGAGAA-TTTCTTCAGGGGAAGTGATGTCCATTGTATTCTG 1030
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 959 CTACTCATGATGAAGAAACCGAGAACTTT-TTCAGGGGAAGTGATGTCCATTGTATTCTG 1017
Query 1031 TGCCCTCGTAACCCGGATGACGGTGGTAGCATAGTCCAAAGTTTGCAGATCTCTACTATG 1090
|| ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 1018 TGTCCTCGTAACCCGGATGATGGTGGTAGCATAGTCCAAAGCTTGCAGGTCTCTACTATG 1077
Query 1091 TTCACGCATCATCAGAAAATCGTTGTTGTGGACAGCGAGATGCCAAGCAGAGGAGGATCA 1150
|||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1078 TTCACGCACCATCAGAAAATCGTTGTTGTGGACAGTGAGATGCCAAACAGAGGAGGATCA 1137
Query 1151 GAAATGAGGAGAATTGTGAGTTTTGTTGGCGGTATTGATCTTTGTGATGGAAGATACGAC 1210
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 GAAATGAGGAGAATTGTGAGCTTTGTTGGCGGTATTGATCTCTGTGATGGAAGATACGAC 1197
Query 1211 ACTCCGTTCCACTCCTTGTTCAGGACATTGGACACAGTCCACCATGATGACTTCCATCAA 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACTCCGTTCCACTCCTTGTTCAGGACATTGGACACAGTCCACCATGATGACTTCCATCAA 1257
Query 1271 CCTAACTTCACTGGTGCTGCTATCACTAAAGGTGGTCCAAGGGAGCCTTGGCATGACATT 1330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CCTAACTTCACTGGTGCTGCTATCACTAAAGGTGGTCCAAGGGAGCCTTGGCATGACATC 1317
Query 1331 CACTCCCGTCTTGAAGGTCCAATTGCTTGGGATGTCATGTACAACTTCGAGCAGAGATGG 1390
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1318 CACTCCCGTCTTGAAGGTCCAATTGCCTGGGATGTCATGTATAATTTCGAGCAGAGATGG 1377
Query 1391 AGCAAGCAGGGTGGTAAAGACATTCTGGTTAAGTTGAGAGATCTTAGTGATATTATTATC 1450
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1378 AGCAAGCAGGGTGGTAAAGACATTCTGGTTAAGTTGAGAGATCTTGGTGATATTATTATC 1437
Query 1451 ACCCCTTCTCCTGTTATGTTCCAAGAGGACCACGATGTGTGGAATGTCCAATTGTTTAGG 1510
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1438 ACCCCTTCTCCTGTTATGTTCCAAGAGGACCATGATGTGTGGAATGTCCAATTGTTTAGA 1497
Query 1511 TCCATTGATGGAGGAGCTGCTGCTGGGTTTCCCGAGTCGCCTGAAGCTGCTGCGGAAGCC 1570
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1498 TCCATTGATGGTGGAGCTGCTGCTGGGTTTCCCGAGTCGCCTGAAGCTGCTGCTGAAGCC 1557
Query 1571 GGGCTTGTAAGTGGGAAAGATAACATCATTGATAGGAGTATCCAAGATGCTTACATTCAT 1630
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GGGCTTGTAAGTGGGAAAGATAACATCATTGATAGGAGTATCCAAGATGCTTACATTCAC 1617
Query 1631 GCAATCAGACGTGCTAAGGATTTCATCTACGTTGAAAACCAGTACTTCCTTGGGAGTTCT 1690
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GCAATCAGACGGGCCAAGGATTTCATCTACGTTGAAAACCAGTACTTCCTTGGGAGTTCT 1677
Query 1691 TTTGCTTGGGCAGCCGATGGTATTACTCCTGAGGACATCAATGCCCTGCACTTAATCCCA 1750
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TTTGCTTGGGCCGCCGATGGTATTACTCCTGAGGACATCAATGCCCTGCACTTAATCCCA 1737
Query 1751 AAAGAGTTGTCGCTGAAGATAGTTAGCAAGATTGAGAAAGGAGAGAAGTTCAGGGTCTAT 1810
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1738 AAAGAGTTATCGCTGAAGATAGTTAGCAAGATCGAGAAAGGAGAGAAGTTCAGGGTGTAT 1797
Query 1811 GTTGTGGTTCCAATGTGGCCAGAAGGTCTCCCAGAGAGTGGATCAGTGCAAGCTATATTA 1870
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GTTGTGGTCCCAATGTGGCCAGAAGGTCTCCCAGAGAGTGGATCAGTGCAAGCTATATTA 1857
Query 1871 GACTGGCAGAGGAGGACCATGGAGATGATGTACAAGGATGTGATTCAGGCTCTCAGGGCC 1930
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GATTGGCAGAGGAGGACCATGGAGATGATGTACAAGGATGTGATTCAGGCTCTCAGGGCG 1917
Query 1931 CAGGGTCTTGAGGAAGATCCAAGAAACTATCTGACATTCTTCTGTCTTGGAAACCGTGAG 1990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 CAGGGTCTTGAGGAAGATCCAAGAAACTATCTGACATTCTTCTGTCTTGGAAACCGTGAG 1977
Query 1991 GTCAAGAAAGATGGAGAGTATGAGCCTGCTGAGAAACCAGACCCCGACACTGATTACATG 2050
||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 1978 GTCAAGAAAGATGGAGAATATGAGCCTGCTGAGAAACCAGACCCCGACACAAATTATATG 2037
Query 2051 AGGGCGCAAGAAGCACGCCGTTTCATGATTTACGTCCACACCAAAATGATGATCGTTGAC 2110
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AGGGCGCAAGAAGCCCGCCGCTTCATGATTTACGTCCACACCAAAATGATGATCGTTGAC 2097
Query 2111 GATGAATACATTATCATTGGGTCTGCTAACATCAACCAGAGGTCAATGGACGGTGCAAGA 2170
||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 GATGAGTATATTATTATCGGGTCTGCTAACATCAACCAGAGGTCAATGGACGGTGCAAGA 2157
Query 2171 GACTCTGAGATAGCAATGGGAGGTTATCAACCACATCACTTGTCCCATAGACAACCAGCT 2230
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2158 GACTCTGAGATAGCAATGGGAGGTTATCAACCACATCACCTGTCCTATAGACAACCAGCT 2217
Query 2231 CGTGGCCAGATCCATGGGTTTCGTATGTCACTCTGGTACGAACACCTGGGAATGCTCGAT 2290
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2218 CGTGGCCAGATCCATGGGTTCCGTATGTCACTCTGGTACGAACACCTGGGAATGCTAGAT 2277
Query 2291 GAAACCTTCCTCGATCCATCAAGCTTGGAATGCATTGAGAAAGTTAACCGCATTTCTGAC 2350
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 GAAACCTTCCTCGATCCCTCAAGCTTGGAATGCATTGAGAAAGTTAACCGCATTTCTGAC 2337
Query 2351 AAGTATTGGGACTTTTACTCAAGTGAGTCACTCGAACATGACCTTCCTGGTCACTTGCTC 2410
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2338 AAGTATTGGGACTTTTACTCAAGTGAGTCACTTGAACATGACCTTCCCGGTCACTTGCTC 2397
Query 2411 CGCTACCCGATCGGTGTAGCCAGCGAAGGCGACATCACTGAGCTTCCAGGATTTGAATTC 2470
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2398 CGCTACCCGATTGGTGTAGCTAGCGAAGGCGACATCACTGAGCTTCCAGGATTTGAATTC 2457
Query 2471 TTCCCGGACACAAAGGCCCGTATCCTCGGCACCAAATCAGACTACCTGCCTCCAATCCTT 2530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2458 TTCCCGGACACAAAGGCCCGTATCCTCGGCACCAAATCAGACTACCTGCCTCCAATCCTT 2517
Query 2531 ACAACCTAATCTCACTAAGCATGTCAAGTAATGAtctctctctc-c-ctctct--GCTTT 2586
||||||||| |||||| |||||| |||||||||||||||||| | |||||| |||||
Sbjct 2518 ACAACCTAACCTCACTGCGCATGTTGAGTAATGATCTCTCTCTCTCGCTCTCTCTGCTTT 2577
Query 2587 GCTGCTGTTGTAGCTTTGAATAAAACTTGAGTGTCTACCTTTAGAATTAAGAAGTCAAAT 2646
|||||||||||||||||||||||| || |||||||||||| ||||||||| |||| || |
Sbjct 2578 GCTGCTGTTGTAGCTTTGAATAAA-CTCGAGTGTCTACCTGTAGAATTAATAAGTTAA-T 2635
Query 2647 GGTTGTTATGATGATGCA-CTTCTTT-ACCCCTTTGGTTTTTATATTCGTACAATGACGT 2704
||||| | |||||||||| || |||| ||||||| |||||| ||||||||||||||||||
Sbjct 2636 GGTTGGTGTGATGATGCAACT-CTTTTACCCCTT-GGTTTT-ATATTCGTACAATGACGT 2692
Query 2705 GGTGAGAGAATGTAGCTTTGTGATCTTGTTTTGTTGTTGTTATGTACCTTTGGACTTATG 2764
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2693 GGTGAGAGAATGTAGCTTTGTGATCTTCTTTTGTTGTTGTTATGTACCTTTGAACTTATG 2752
Query 2765 AATCTTATATCTGATCCTTTTCTTTTTATT 2794
||||||||||||||||||||||||||||||
Sbjct 2753 AATCTTATATCTGATCCTTTTCTTTTTATT 2782
> Ahg914427 jgi|Araly1|914427|Al_scaffold_0001_4681
Length=2433
Score = 2106 bits (1140), Expect = 0.0
Identities = 2013/2431 (83%), Gaps = 74/2431 (3%)
Strand=Plus/Plus
Query 146 ATCTATGAAGTTGATGC-CCTCCATGGTGGTGGTGTTAG-GCAAGGCTTCCTT-GGCA-A 201
||||||||||||||| | ||||||| || || | ||| | ||| || ||| || |
Sbjct 40 ATCTATGAAGTTGAT-CGTCTCCATGCTGAAGGAGGTAGATC-AGG-TTTCTTAGG-ATC 95
Query 202 GATTCTGGCAAATGTAGAAGAGACGATTGGTGTTGGTAAAGGAGAAACACAG-TTGTATG 260
||| || |||||||||||||| || ||||||||||| ||||||||||| ||| || || |
Sbjct 96 GATACTAGCAAATGTAGAAGAAACAATTGGTGTTGGCAAAGGAGAAACTCAGCTT-TACG 154
Query 261 CGACGATTGATC-TGCAAAAAGCTAGAGTTGGGAGAACCAGGAAGATCAA-AAATGAACC 318
| || || |||| || | ||||| |||||||| ||||| ||||| || || ||| || ||
Sbjct 155 CTACAATCGATCTTG-AGAAAGCGAGAGTTGGAAGAACAAGGAAAAT-AACAAAGGAGCC 212
Query 319 TAAGAACCCAAAGTGGTATGAGTCGTTTCATATTTACTGTGCTCACTTGGCTTCTGATAT 378
|| ||||||||||||| ||| || |||||||||||||||| |||| ||||| || |
Sbjct 213 AAAAAACCCAAAGTGGTTTGAATCTTTTCATATTTACTGTGGTCACATGGCTAAACATGT 272
Query 379 CATCTTCACTGTTAAAGATGATAATCCCATTGGAGCTACCCTTATCGGAAGAGCTTACAT 438
|| ||||||||||| |||| |||||| ||||| ||||| || |||||||||| ||| ||
Sbjct 273 TATTTTCACTGTTAAGGATGCTAATCCGATTGGCGCTACGCTGATCGGAAGAGGTTATAT 332
Query 439 TCCTGTTGATCA-AGTCATT-AACGGCGAGGAAGTGGATCAG-TGGGTTGAGATCTTGGA 495
|||||| || | | | || | || || ||||| || ||| |||||||| ||||| ||
Sbjct 333 TCCTGTGGAAGATA-T-TTTGCATGGAGAAGAAGTTGA-CAGATGGGTTGATATCTTAGA 389
Query 496 TAATGACAGAAACCCTATT-CAGGGAGGATCAAAGATTCATGTCAAGCTTCAATATTTCC 554
|||||| | |||||| ||| | |||||||||||||| ||||| || || |||||||||
Sbjct 390 TAATGATAAAAACCCCATTGC-TGGAGGATCAAAGATCCATGTGAAACTCCAATATTTCG 448
Query 555 ATGTTGAGGAGGATCGTAACTGGAACAT-G-GGTATCAAAAGTGCCAAGTTCCCTGGAGT 612
||||||| ||||| |||||| | || | |||||||||||||| ||||| || |||||
Sbjct 449 GTGTTGAGAAGGATAAAAACTGG-A-ATCGAGGTATCAAAAGTGCTAAGTTTCCAGGAGT 506
Query 613 GCCATACACATTCTTCTCGCAGAGACA-AGGCTGCAAAGTTTCTCTGTACCAAGATGCTC 671
|| |||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||
Sbjct 507 TCCTTACACATTCTTCTCTCAGAGA-AGAGGCTGCAAAGTTTCTCTGTATCAAGATGCTC 565
Query 672 ATATTCC-AGACAACTTTGTCCCTAGAATTCCTCTCGCTGGAGGGAAGAACTATGAGCCT 730
||||||| || ||||||||||| | ||| |||||||| || || || ||||| |||||
Sbjct 566 ATATTCCTGGA-AACTTTGTCCCAAAAATCCCTCTCGCGGGTGGAAAAAACTACGAGCCA 624
Query 731 CAAAGATGTTGGGAGGATATTTTTGATGCTATTAGC-AATGCAAAACACTTGATCTACAT 789
||||||||||||||||||| ||||| |||| | ||||||||||||||||| |||||
Sbjct 625 GGTCGATGTTGGGAGGATATTTTCGATGCCATTA-CTAATGCAAAACACTTGATTTACAT 683
Query 790 TACTGGTTGGTCTGTTTACGCTGAGATTGCTTTAGTGAGGGACTCGAGGAGGCCTAAGCC 849
||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |
Sbjct 684 TACTGGTTGGTCTGTTTACACTGAGATTTCTTTAGTGAGGGACTCGAGGAGGCCAAAACA 743
Query 850 TGGAGGTGATGTGACCATTGGTGAGCTACTCAAGAAGAAGGCTAGTGAAGGTGTCAGGGT 909
||||| ||||||||||||||||||||||||||||| || |||||||||||||| | |||
Sbjct 744 AGGAGGAGATGTGACCATTGGTGAGCTACTCAAGAAAAAAGCTAGTGAAGGTGTTAAGGT 803
Query 910 TCTTTTGCTTGTTTGGGATGACAGAACTTCTGTTGATGTGCTGAAGAAAGATGGGCTCAT 969
||||||||||||||||||||||||| ||||||||| ||||||| |||||||| || ||
Sbjct 804 AATTTTGCTTGTTTGGGATGACAGAACGTCTGTTGATTTGCTGAAAAAAGATGGACTTAT 863
Query 970 GGCTACTCATGATGAAGAGACCGAGAATTTCTTCAGGGGAAGTGATGTCCATTGTATTCT 1029
||| |||||||||||||| || |||||||| ||||| |||| || || | |||||| |
Sbjct 864 GGCCACTCATGATGAAGAAACTGAGAATTTTTTCAGAGGAACCGACGTGAACTGTATTTT 923
Query 1030 GTGCCCTCGTAACCCGGATGACGGTGGTAGCATAGTCCAAAGTTTGCAGATCTCTACTAT 1089
||| ||||||||||| ||||| ||||| ||||| ||||||| ||||| ||||| |||||
Sbjct 924 GTGTCCTCGTAACCCTGATGATGGTGGAAGCATTGTCCAAAACTTGCAAATCTCAACTAT 983
Query 1090 GTTCACGCATCATCAGAAA-ATCGTTGTTGTGGACAGCGAGATGCCAAGCAGAGGAGGAT 1148
|||||| ||||| || ||| || |||||||| ||||| || |||||||| | | |||||
Sbjct 984 GTTCACTCATCACCA-AAAGATTGTTGTTGTAGACAGTGAAATGCCAAGT-G-G-AGGAT 1039
Query 1149 CAGAAATGAGGA-GAATTGTGAGTTTTGTTGGCGGTATTGATCTTTGTGATGGAAGATAC 1207
|| | || | || ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1040 CA-AGATCAAGAAGAATTGTGAGTTTTGTTGGTGGTCTTGATCTTTGTGATGGAAGATAT 1098
Query 1208 GACACTCCGTTCCACTCCTTGTTCAGGACATTGGACACAGTCCACCATGATGACTTCCAT 1267
|||||||| || ||||||||||| || ||||||||||| | ||| || ||||||||||||
Sbjct 1099 GACACTCCATTTCACTCCTTGTTTAGAACATTGGACACTGCCCATCACGATGACTTCCAT 1158
Query 1268 CAACCTAACTTCACTGGTGCTGCTATCACTAAAGGTGGTCCAAGGGAGCCTTGGCATGAC 1327
||||| || |||||||| ||||| || || ||||| ||||| || ||||| |||||||||
Sbjct 1159 CAACCGAATTTCACTGGCGCTGCGATAACCAAAGGCGGTCCTAGAGAGCCATGGCATGAC 1218
Query 1328 ATTCACTCCCGTCTTGAAGGTCCAATTGCTTGGGATGTCATGTACAACTTCGAGCAGAGA 1387
||||| | ||||||||||| || ||||||||||||||| |||| || || |||||||||
Sbjct 1219 ATTCATTGTCGTCTTGAAGGACCTATTGCTTGGGATGTCTTGTATAATTTTGAGCAGAGA 1278
Query 1388 TGGAGCA-AGCAGGGTGGTAAAGACATTCTGGTTAAGTTGAGAGATCTTAG-TGATATTA 1445
||||| | | || ||||||||||| ||| ||||||| | |||||||| || ||||||||
Sbjct 1279 TGGAGTAGA-CAAGGTGGTAAAGATATTTTGGTTAAAATAAGAGATCT-AGGTGATATTA 1336
Query 1446 TTATCACC-CCTTCTCCTGTTATGTTC-CAAGAGGACCACGATGTGTGGAATGTCCAATT 1503
| ||| || |||||||||||| ||||| | ||||| ||||||||||||||||| || ||
Sbjct 1337 TCATC-CCGCCTTCTCCTGTTTTGTTCTCG-GAGGATCACGATGTGTGGAATGTTCAGTT 1394
Query 1504 GTTTAGGTCCATTGATGGAGGAGCTGCTGCTGGGTTTCCCGAGTCGCCTGAAGCTGCTGC 1563
|||||| ||||||||||| ||||| |||||||| ||||| || || ||||||||||| ||
Sbjct 1395 GTTTAGATCCATTGATGGTGGAGCAGCTGCTGGATTTCCTGACTCACCTGAAGCTGCAGC 1454
Query 1564 GGAAGCCGGGCTTGTAAGTGGGAAAGATAACATCATTGATAGGAGTATCCAAGATGCTTA 1623
|||||| || ||||| || || |||||||| || |||||||||||||| |||||||||||
Sbjct 1455 GGAAGCAGGTCTTGTGAGCGGAAAAGATAATATAATTGATAGGAGTATTCAAGATGCTTA 1514
Query 1624 CATTCATGCAATCAGACGTGCTAAGGATTTCATCTACGTTGAAAACCAGTACTTCCTTGG 1683
|||||| || || ||||| ||||| ||||||||||| | ||||||||||||||||||||
Sbjct 1515 CATTCACGCGATTAGACGAGCTAAAGATTTCATCTATATCGAAAACCAGTACTTCCTTGG 1574
Query 1684 GAGTTCTTTTGCTTGG-GCAGCCGATGGTATTACTCCTGAGGACATCAATGCCCTGCACT 1742
|| |||||||||||| || || ||||| || | || ||||| |||||||| ||||| |
Sbjct 1575 AAGCTCTTTTGCTTGGAGC-GCTGATGGAATCAAACCAGAGGAAATCAATGCTCTGCATT 1633
Query 1743 TAATCCCAAAAGAGTTGTCGCTGAAGATAGTTAGCAAGATTGA-GAAAGGAGAGAAGTTC 1801
| || ||||| ||| | || ||||||| ||||||||||| | | | || ||||||||
Sbjct 1634 TGATTCCAAAGGAGCTATCTTTGAAGATTGTTAGCAAGATCAAAGCAGGG-GAGAAGTTT 1692
Query 1802 AGGGTCTATGTTGTGGTTCCAATGTGGCCAGAAGGTC-TCCCAGAGAGTGGATCAGTGCA 1860
| |||||||||||| |||||||||||||| ||||| | | || |||||||||||||| ||
Sbjct 1693 AAGGTCTATGTTGTTGTTCCAATGTGGCCTGAAGG-CATTCCTGAGAGTGGATCAGTCCA 1751
Query 1861 AGCTATATTAGACTGGCAGAGGAGGACCATGGAGATGATGTACAAGGATGTGATTCA-GG 1919
||||||||| || ||||||| || || ||||||||||||||||| ||||| || || ||
Sbjct 1752 AGCTATATTGGATTGGCAGAAAAGAACAATGGAGATGATGTACAAAGATGTAAT-CAAGG 1810
Query 1920 CTCTCAGGGCC-CAGGGTCTTGAGG-A-AG-ATCCAAGAAACTATCTGACATTCTTCTGT 1975
| || || | | ||| || |||| | || |||| || | ||||| |||||||||||
Sbjct 1811 CACTTAGAGAAAC-GGGACTCGAGGGAGAGGATCCGCGAGATTATCTAACATTCTTCTGC 1869
Query 1976 CTTGGAAACCGTGAGGTCAAGAAAGATGGAGAGTATGAGCCTGCTGAGAAACCAGACCCC 2035
|| |||||||| || |||||||| |||||||||||||||||| | |||||||| || ||
Sbjct 1870 CTCGGAAACCGAGAAGTCAAGAAGGATGGAGAGTATGAGCCTTCAGAGAAACCTGAACCG 1929
Query 2036 GACACTGATTACATGAGGGCGCAAGAAGCACGCCGTTTCATGATTTACGTCCACACCAAA 2095
|||||||| || || | || |||||||||||||| |||||||| || || ||||| |||
Sbjct 1930 GACACTGACTATATCCGAGCACAAGAAGCACGCCGCTTCATGATCTATGTTCACACTAAA 1989
Query 2096 ATGATGATCGTTGACGATGAATACATTATCATTGGGTCTGCTAACATCAACCAGAGGTCA 2155
|||||||| ||||||||||| |||||||| || || || || || |||||||||||||||
Sbjct 1990 ATGATGATAGTTGACGATGAGTACATTATAATCGGATCAGCAAATATCAACCAGAGGTCA 2049
Query 2156 ATGGACGGTGCAAGAGACTCTGAGATAGCAATGGGAGGTTATCAACCACATCA-CTTGTC 2214
||||| |||||||||||||| |||||||| |||||||| ||||||||| |||| || ||
Sbjct 2050 ATGGATGGTGCAAGAGACTCAGAGATAGCGATGGGAGGCTATCAACCATATCATCTA-TC 2108
Query 2215 C-CATAGACAACCAGCTCGTGGCCAGATCCATGGGTTTCGTATGTCACTCTGGTACGAAC 2273
| || |||||||||||||| || || |||||||| || || ||||| | ||||| ||||
Sbjct 2109 CACA-AGACAACCAGCTCGAGGTCAAATCCATGGATTCCGCATGTCGTTGTGGTATGAAC 2167
Query 2274 ACCTGGGAATGCTCGATGAAACCTTCCTCGATCCATCAAGCTTGGAATGCATTGAGAAAG 2333
| | ||||||||||||||||| |||||||||||||| ||| ||||| || | ||||
Sbjct 2168 ATTTAGGAATGCTCGATGAAACATTCCTCGATCCATCGAGCCAAGAATGTATCCAAAAAG 2227
Query 2334 TTAACCGCATTTCTGACAAGTATTGGGA-CTTTTACTCAAGTGAGTCACTCGAACATGAC 2392
||||||| || |||| ||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 2228 TTAACCGTGTTGCTGATAAGTATTGGGATCTTT-ACTCAAGTGAGTCACTTGAACATGAT 2286
Query 2393 CTTCCTGGTCA-CTTGCTCCGCTACCCGATCGGTGTAGCCAGCGAAGGCGA-CATCACTG 2450
||||| ||||| || || ||||||||||||||| | || || ||||| || ||||||||
Sbjct 2287 CTTCCCGGTCATCTA-CTTCGCTACCCGATCGGTATTGCTAGTGAAGG-GAACATCACTG 2344
Query 2451 AGCTTCC-AGGATTTGAATTCTT-CCCGGACACAAAGGCCCGTATCCTCGGCACCAAATC 2508
||||||| || || ||||||||| |||| ||||||| ||||||||||| || | |||||
Sbjct 2345 AGCTTCCCAG-ATGTGAATTCTTTCCCG-ACACAAAAGCCCGTATCCTTGGTGCTAAATC 2402
Query 2509 AGACTACCTGCCTCCAATCCTTACAACCTAA 2539
|| ||| ||||||| || ||||||||||||
Sbjct 2403 TGATTACATGCCTCCCATTCTTACAACCTAA 2433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106043242080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5