BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15750.1 Length=903 Score E Sequences producing significant alignments: (Bits) Value Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732 684 0.0 Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188 573 7e-163 > Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732 Length=621 Score = 684 bits (370), Expect = 0.0 Identities = 479/529 (91%), Gaps = 17/529 (3%) Strand=Plus/Plus Query 87 GATGATCCCTTTTACGGAAGTTCAGATGAAGAAGACTATAGTGAAGCTCGCGTGTTGGGC 146 ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||| | Sbjct 106 GATGATCCCTTTTACGGAAGTTCAGAT---GAAGATTATAGTGAAACTCGCGTCTTGGAC 162 Query 147 AATGAGAATAAGC-AGAGACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGT 205 ||||||||||| | ||||||||||||||| | ||||||||||| |||||||||||||| Sbjct 163 AATGAGAATAA-CTTGAGACGTGTGAAATTTGAATCGGCTGGATACCGTGATGGGATTGT 221 Query 206 TGCCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCT 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 222 TGCCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCTGTTCT 281 Query 266 TAATGGTTACCAGTTTGGTCTTGTTAGAGGTGTTTCCAGTGCG-TTGGCTTTCCTCCCGG 324 | |||||||| |||||||| |||| |||||||||||||||||| ||| |||||||||| | Sbjct 282 TGATGGTTACAAGTTTGGTATTGTAAGAGGTGTTTCCAGTGCGCTTG-CTTTCCTCCCTG 340 Query 325 ATGAGCTTAGAGAAAAGCTTATCGATAAACAAGAAACTAGAGAGAAGTTTCAGAAATTAC 384 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 341 ATGAGCTTAGAGAAAAGCTAATCGATGAACAAGAAACTAGAGAGAAGTTTCAGAAATTAC 400 Query 385 ACAGTTCTGTGCATGCTCTTTCGACGGAAGTCGCAATGAAGCGGTTCTATGAAACTTTGA 444 ||||||||||||||||||| || || ||||| |||||||| ||||||||||||||||||| Sbjct 401 ACAGTTCTGTGCATGCTCTCTCAACTGAAGTAGCAATGAAACGGTTCTATGAAACTTTGA 460 Query 445 CTACGAAGCAAGGGGAAGAGAAGAGTGGAGAAGAAGGGCCCGACTCTTG-TTCTGATTCA 503 |||| |||||||||||| |||||||||||||||||||| | |||| ||| ||||| ||| Sbjct 461 CTACAAAGCAAGGGGAAAAGAAGAGTGGAGAAGAAGGGTCTGACT-TTGGTTCTGTTTCC 519 Query 504 GGTTCTGGTTCAGGTGTTAATGTCACAACCGACTTAGGAAGCTATGTTACTGAGCTAAGT 563 ||||| || | |||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 520 GGTTC-GG----G-TGTTAATGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAGC 573 Query 564 TCTCTTCTTGACAAATCTCC-AACGATTGAAGTTAAATTTGACACATAG 611 ||||||||||| |||||||| || ||||||||||||||| ||||||||| Sbjct 574 TCTCTTCTTGAAAAATCTCCTAA-GATTGAAGTTAAATTGGACACATAG 621 Score = 124 bits (67), Expect = 9e-28 Identities = 73/76 (96%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 12 ATGGAGCCGCATGAAGATGTGAAGGATAATTTGGCCAAAGAGCTTTATGGAGAAAGTGTA 71 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGAGCCGCCTGAAGATGTGAAGGATAATTTCGCCAAAGAGCTTTATGGAGAAAGTGTA 60 Query 72 CAGCTTTCGAAGCATG 87 ||||||||||| |||| Sbjct 61 CAGCTTTCGAAACATG 76 > Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188 Length=675 Score = 573 bits (310), Expect = 7e-163 Identities = 462/531 (87%), Gaps = 27/531 (5%) Strand=Plus/Plus Query 90 GATCCCTTTTACGGAAGTTCAGATGAAGAAGACTA-TAGTGAAGCTCGCGTGTTGGGCAA 148 |||||||||||||||||||| ||||||||| | || |||||||||||||||||||| ||| Sbjct 163 GATCCCTTTTACGGAAGTTCGGATGAAGAACA-TAGTAGTGAAGCTCGCGTGTTGGACAA 221 Query 149 TGAGAATAAGCAGAGACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGTTGC 208 |||||||||| ||||| ||| ||||||||| |||||||||| |||||||||||||| || Sbjct 222 TGAGAATAAGTTGAGACTTGTTAAATTCCACACGGCTGGATACCGTGATGGGATTGTCGC 281 Query 209 CGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTAA 268 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 282 CGGGAAAGAAGCTATTGCGCAACAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTGA 341 Query 269 TGGTTACCAGTTTGGTCTTGTTAGAGGTGTTTCCAGTGCGTTGGCTTTCCTCCCGGATGA 328 || ||| | |||||| |||||||||||||||||||||| ||||||||||||| ||||| Sbjct 342 TGCCTACAAATTTGGTATTGTTAGAGGTGTTTCCAGTGCACTGGCTTTCCTCCCAGATGA 401 Query 329 GCTTAGAGAAAAGCTTATCGATAAACAAGAAACTAGAGAGAAGTTTCAGAAATTACACAG 388 ||| ||||| ||||| |||||| ||||||||||| |||| || ||||||||||||||||| Sbjct 402 GCTAAGAGAGAAGCTGATCGATGAACAAGAAACTCGAGATAATTTTCAGAAATTACACAG 461 Query 389 TTCTGTGCATGCTCTT-TCGAC-GGAAGTCGCAATGAAGCGGTTCTATGAAACTTTGACT 446 || ||||||||| ||| || || |||||| ||||||||||||||||||||||| ||||| Sbjct 462 TTGTGTGCATGC-CTTATC-ACCGGAAGTAGCAATGAAGCGGTTCTATGAAACGCTGACT 519 Query 447 ACGAAGCAAGGGGAAGAGAA-GAGTGGAGAAGAAGGGCCCGACTCTTGTTCTGATTCAGG 505 || |||||| |||||| ||| ||||||||| ||||| ||| | | || || Sbjct 520 ACAAAGCAAAGGGAAG-GAAAGAGTGGAGATCAAGGG------TCT-GA-CA-AT---GG 566 Query 506 TTCTGGTTCAGGTGTTAATG-T-C-ACAACCGACTTAGGAAGCTATGTTACTGAGCTAAG 562 ||||||||| |||||||||| | | ||||||||||| ||||||||||||||||||||||| Sbjct 567 TTCTGGTTCGGGTGTTAATGCTGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAG 626 Query 563 TTCTCTTCTTGACAAATCTCC-AACGATTGA-AGTTAAATTTGACACATAG 611 |||||||||||||||||||| || |||||| | ||||||| ||||||||| Sbjct 627 CTCTCTTCTTGACAAATCTCCTAA-GATTGACA-TTAAATTGGACACATAG 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33471921126 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5