BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15750.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732 684 0.0
Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188 573 7e-163
> Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732
Length=621
Score = 684 bits (370), Expect = 0.0
Identities = 479/529 (91%), Gaps = 17/529 (3%)
Strand=Plus/Plus
Query 87 GATGATCCCTTTTACGGAAGTTCAGATGAAGAAGACTATAGTGAAGCTCGCGTGTTGGGC 146
||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||| |
Sbjct 106 GATGATCCCTTTTACGGAAGTTCAGAT---GAAGATTATAGTGAAACTCGCGTCTTGGAC 162
Query 147 AATGAGAATAAGC-AGAGACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGT 205
||||||||||| | ||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 163 AATGAGAATAA-CTTGAGACGTGTGAAATTTGAATCGGCTGGATACCGTGATGGGATTGT 221
Query 206 TGCCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCT 265
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 222 TGCCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCTGTTCT 281
Query 266 TAATGGTTACCAGTTTGGTCTTGTTAGAGGTGTTTCCAGTGCG-TTGGCTTTCCTCCCGG 324
| |||||||| |||||||| |||| |||||||||||||||||| ||| |||||||||| |
Sbjct 282 TGATGGTTACAAGTTTGGTATTGTAAGAGGTGTTTCCAGTGCGCTTG-CTTTCCTCCCTG 340
Query 325 ATGAGCTTAGAGAAAAGCTTATCGATAAACAAGAAACTAGAGAGAAGTTTCAGAAATTAC 384
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 341 ATGAGCTTAGAGAAAAGCTAATCGATGAACAAGAAACTAGAGAGAAGTTTCAGAAATTAC 400
Query 385 ACAGTTCTGTGCATGCTCTTTCGACGGAAGTCGCAATGAAGCGGTTCTATGAAACTTTGA 444
||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||
Sbjct 401 ACAGTTCTGTGCATGCTCTCTCAACTGAAGTAGCAATGAAACGGTTCTATGAAACTTTGA 460
Query 445 CTACGAAGCAAGGGGAAGAGAAGAGTGGAGAAGAAGGGCCCGACTCTTG-TTCTGATTCA 503
|||| |||||||||||| |||||||||||||||||||| | |||| ||| ||||| |||
Sbjct 461 CTACAAAGCAAGGGGAAAAGAAGAGTGGAGAAGAAGGGTCTGACT-TTGGTTCTGTTTCC 519
Query 504 GGTTCTGGTTCAGGTGTTAATGTCACAACCGACTTAGGAAGCTATGTTACTGAGCTAAGT 563
||||| || | |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 520 GGTTC-GG----G-TGTTAATGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAGC 573
Query 564 TCTCTTCTTGACAAATCTCC-AACGATTGAAGTTAAATTTGACACATAG 611
||||||||||| |||||||| || ||||||||||||||| |||||||||
Sbjct 574 TCTCTTCTTGAAAAATCTCCTAA-GATTGAAGTTAAATTGGACACATAG 621
Score = 124 bits (67), Expect = 9e-28
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 12 ATGGAGCCGCATGAAGATGTGAAGGATAATTTGGCCAAAGAGCTTTATGGAGAAAGTGTA 71
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGCCGCCTGAAGATGTGAAGGATAATTTCGCCAAAGAGCTTTATGGAGAAAGTGTA 60
Query 72 CAGCTTTCGAAGCATG 87
||||||||||| ||||
Sbjct 61 CAGCTTTCGAAACATG 76
> Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188
Length=675
Score = 573 bits (310), Expect = 7e-163
Identities = 462/531 (87%), Gaps = 27/531 (5%)
Strand=Plus/Plus
Query 90 GATCCCTTTTACGGAAGTTCAGATGAAGAAGACTA-TAGTGAAGCTCGCGTGTTGGGCAA 148
|||||||||||||||||||| ||||||||| | || |||||||||||||||||||| |||
Sbjct 163 GATCCCTTTTACGGAAGTTCGGATGAAGAACA-TAGTAGTGAAGCTCGCGTGTTGGACAA 221
Query 149 TGAGAATAAGCAGAGACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGTTGC 208
|||||||||| ||||| ||| ||||||||| |||||||||| |||||||||||||| ||
Sbjct 222 TGAGAATAAGTTGAGACTTGTTAAATTCCACACGGCTGGATACCGTGATGGGATTGTCGC 281
Query 209 CGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTAA 268
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 282 CGGGAAAGAAGCTATTGCGCAACAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTGA 341
Query 269 TGGTTACCAGTTTGGTCTTGTTAGAGGTGTTTCCAGTGCGTTGGCTTTCCTCCCGGATGA 328
|| ||| | |||||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct 342 TGCCTACAAATTTGGTATTGTTAGAGGTGTTTCCAGTGCACTGGCTTTCCTCCCAGATGA 401
Query 329 GCTTAGAGAAAAGCTTATCGATAAACAAGAAACTAGAGAGAAGTTTCAGAAATTACACAG 388
||| ||||| ||||| |||||| ||||||||||| |||| || |||||||||||||||||
Sbjct 402 GCTAAGAGAGAAGCTGATCGATGAACAAGAAACTCGAGATAATTTTCAGAAATTACACAG 461
Query 389 TTCTGTGCATGCTCTT-TCGAC-GGAAGTCGCAATGAAGCGGTTCTATGAAACTTTGACT 446
|| ||||||||| ||| || || |||||| ||||||||||||||||||||||| |||||
Sbjct 462 TTGTGTGCATGC-CTTATC-ACCGGAAGTAGCAATGAAGCGGTTCTATGAAACGCTGACT 519
Query 447 ACGAAGCAAGGGGAAGAGAA-GAGTGGAGAAGAAGGGCCCGACTCTTGTTCTGATTCAGG 505
|| |||||| |||||| ||| ||||||||| ||||| ||| | | || ||
Sbjct 520 ACAAAGCAAAGGGAAG-GAAAGAGTGGAGATCAAGGG------TCT-GA-CA-AT---GG 566
Query 506 TTCTGGTTCAGGTGTTAATG-T-C-ACAACCGACTTAGGAAGCTATGTTACTGAGCTAAG 562
||||||||| |||||||||| | | ||||||||||| |||||||||||||||||||||||
Sbjct 567 TTCTGGTTCGGGTGTTAATGCTGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAG 626
Query 563 TTCTCTTCTTGACAAATCTCC-AACGATTGA-AGTTAAATTTGACACATAG 611
|||||||||||||||||||| || |||||| | ||||||| |||||||||
Sbjct 627 CTCTCTTCTTGACAAATCTCCTAA-GATTGACA-TTAAATTGGACACATAG 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5