BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15760.1

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904520 jgi|Araly1|904520|Al_scaffold_0003_1648                    660    0.0  


> Ahg904520 jgi|Araly1|904520|Al_scaffold_0003_1648
Length=408

 Score =  660 bits (357),  Expect = 0.0
 Identities = 392/409 (96%), Gaps = 2/409 (0%)
 Strand=Plus/Plus

Query  188  ATGTTGAGCTGTTCTAATGGTACCGTCGTGATCGCAACCGCCATGGTTTGCTCAAGCACC  247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTGAGCTGTTCTAATGGTACCGTCGTGATCGCAACCGCCATGGTTTGCTCAAGCACC  60

Query  248  GCTCTGTTTCTCGCCATGGCTCGTCAATTCCATGGAAATCATCAAAA-TCCTAAGGTTCT  306
            ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||
Sbjct  61   GCTCTGTTTCTCGCCATGGCTCGTCAATTCCATGGAAATCATCAAACCTC-TAAGGTTCT  119

Query  307  TGATCAGACTCTACGACCCATTCTCCGTTCTTGTCTATCTTCAGAGGAAACGAAGAAACA  366
            ||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct  120  TGATCAGACTCCACGACCCATTCTCCGTTCTTGTTTATCTTCAGAGAAAACGAGGAAACA  179

Query  367  GGGGAAGAAGATAAAGAAAGTGCGGTTCGCGGATAATGTGAAAGATACGAAAGGTAACGG  426
            | |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  180  GAGGAAGAGGATAAAGAAAGTGCGGTTCGCGGATAATGTGAAAGACACGAAAGGGAACGG  239

Query  427  GGAAGAGTACCGGAGGAGGGAATTGAACCGGAAAAGCGTACCGAAGCCAGTGACTAAACC  486
            |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct  240  GGAAGAATACCGGAGGAGGGAATTGAACCGGAGAAGCGTACCGGAGCCAGTGACTAAACC  299

Query  487  GGGAAAGACCGGTTCTATGTGTAGAATCTCTACCATGCCAGCGAACCGGATGGCTCTGTA  546
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GGGGAAGACCGGTTCTATGTGTAGAATCTCTACCATGCCAGCGAACCGGATGGCTCTGTA  359

Query  547  CAATGGGATTCTTAGAGACCGAGATCACAGAGTTCAATATTCTTATTGA  595
            |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct  360  CAATGGGATTCTCAGAGACCGAGATCACAGAGTTCAATGTTCTTATTGA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31184546106


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5