BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15770.1
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479030 jgi|Araly1|479030|fgenesh2_kg.3__1731__AT3G15770.1 869 0.0
> Ahg479030 jgi|Araly1|479030|fgenesh2_kg.3__1731__AT3G15770.1
Length=640
Score = 869 bits (470), Expect = 0.0
Identities = 592/647 (91%), Gaps = 24/647 (4%)
Strand=Plus/Plus
Query 10 AAAAAGAAATCGTC-TTTCC-TT---TTACTTC-TCTTCTTCCGATTGGGTCTTTGATCA 63
|||||||||||||| ||||| || || |||| ||||||||||| |||||||||| | |
Sbjct 1 AAAAAGAAATCGTCTTTTCCTTTCACTTTCTTCTTCTTCTTCCGACTGGGTCTTTGTTGA 60
Query 64 TTTC-C-CCAATCGATTGATAAGTTTTGTTGGGTTGCT-TTCGATTCTTCGTTTGATGAT 120
|||| | | || |||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 61 TTTCACTCGAA--GATTGATAAGTTTTGTTGGG-TGGTGCTCGATTCTTCGTTTGATGAT 117
Query 121 CTAAGAAAGTCTCTG-TCTTTCCACGATGGGCAGTAGTTGTTTGGCTTGTTTTGATAAGT 179
||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTAAGAAGGGCTCTGTTTTTTCCACGATGGGCAGTAGTTGTTTGGCTTGTTTTGATAAGT 177
Query 180 CGAAAGCAAAAAC-A----AG-TGTAGATGTGCCTTTGAATGGCACAAAAGATGTGTTAG 233
||||||||| ||| | || |||||||||||||||||||||| ||||||| |||||||
Sbjct 178 CGAAAGCAACAACAAGTGTAGATGTAGATGTGCCTTTGAATGGCTCAAAAGACGTGTTAG 237
Query 234 TAGAAGAAGATTGGAGTGAATTGAGGAAGCCTAGTGTAGTAGCTTCTGAAGATTTCTGGA 293
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 238 TAGAAGAAGATTGGAGTGAATTGAGGAATCCTA--GT-GTAGCTTCTGAAGATTTCTGGA 294
Query 294 CTAATACCACTTTAGATATGGAAAGCAATGCTCACGGAAGTGTTTCTTCAATCAGTACAA 353
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 295 CTAATACCACTTTAGATATGGAAAGCAATGCTCAGGGAAGTGTTTCTTCAATCAGTACAA 354
Query 354 CCAATCTGACTATTGATTCTCAAGGATGTGGTTCCAGCTCTAATGAACCTGCTGAATTTG 413
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGAATCTGACTGTTGATTCTCAAGGATGTGGTTCCAGCTCTAATGAACCTGCTGAATTTG 414
Query 414 TTAACCATGGTCTTGTGCTATGGAATCAAACTCGGCAGCAATGGGTGGGAGATAAAAGAT 473
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 415 TTAACCATGGTCTTCTGCTATGGAATCAAACTCGGCAGCAATGGGTGGGGGATAAAAAAT 474
Query 474 CCGAGAGCCGT-AAAAGCGTTGGTCGAGAACCGATTCTAAATGAGAATGTGACTTATGAG 532
|||| ||||| |||| ||| |||||||||| || |||||||||||||||||||||||
Sbjct 475 CCGATAGCCGCGAAAAAA-TTGTTCGAGAACCGTTTATAAATGAGAATGTGACTTATGAG 533
Query 533 AGTCTACTTGGGAGCAACAAGCGATTTCCGAGGCCTATACCTCTTGATGAAATGGTGCAG 592
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 534 AGTCTACTTGGGAGCAACAAGCGGTTTCCAAGGCCTATACCTCTTGATGAAATGGTGCAG 593
Query 593 TTTCTTGTTGAAGTTTGGGAAGAAGAAGGTCTATACGGCTAAAAGAT 639
|||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 594 TTTCTTGTTGAAGTTTGGGAAGAAGAGGGTCTATACGGCTGAAAGAT 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27905975244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5