BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15780.1

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929390 jgi|Araly1|929390|scaffold_301847.1                        575    1e-163


> Ahg929390 jgi|Araly1|929390|scaffold_301847.1
Length=396

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 358/381 (94%), Gaps = 2/381 (1%)
 Strand=Plus/Plus

Query  5    AAAAATGGCGATGGCTTTGTCCAACCCGACCACAAGCACTAACCTCTACCACTACTCAAT  64
            ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct  17   AAAAATGGCGATGGCTTTGTCCAACACGACCACAAGCTCTAACCTCAACCACTACTCAAT  76

Query  65   TCTCTCGCCGTTCTCACCGCCGTATCACCTTCACCGTCGAAACACCGTCCTACTAGCGAG  124
            |||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||||
Sbjct  77   TCTCTCGCCGTTCTCATCGCCGTATCACCTTCACCGTCGAAGCATCGTCCTACTCGCGAG  136

Query  125  TCCCCGCCGTTTACGCCGCCTCGCCGTCGCTGGTGGTCCTCCTTCTCCTCCAGGCCCTGA  184
            |||  ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct  137  TCCTTGCCGTTTACGCTGCCTCGCAGTTGCTGGTGGTCCTCCTTCTCCTCCAGGCCCTGA  196

Query  185  TCCGCCTCCGCCTGAGGACACCACTCAGCTAGAAGGTCTTGTGGGAGCTGTGACAAGGGT  244
            ||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct  197  TCCACCTCCGCCTGAGGACACCACTCAGCTTGCAGGTCTTGTGGGAGCTGTGACAAGGAT  256

Query  245  TCAAGACCGCGTAAAGATTTTCCTCGCAGTGTTCTTTTGGATGTTTCTCTTCTTCTGGGT  304
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  257  TCAAGACCGCGTAAAGATCTTCCTCGCAGTGTTTTTTTGGATGTTTCTCTTCTTCTGGGT  316

Query  305  TACAGTCACAGATGGGACG-GGTAAAGGCAAAGGCAAGAAGGGTTCACGTTTCAAGTAGT  363
            |||||| |||||||||| | ||||||||||||||||||||| ||||||||||||| ||||
Sbjct  317  TACAGTGACAGATGGGA-GAGGTAAAGGCAAAGGCAAGAAGAGTTCACGTTTCAAATAGT  375

Query  364  TTCCATATATGAAGAGGCTTT  384
            |||||||||||||||||||||
Sbjct  376  TTCCATATATGAAGAGGCTTT  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20756640416


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5