BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15810.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929393 jgi|Araly1|929393|scaffold_301850.1 1295 0.0
> Ahg929393 jgi|Araly1|929393|scaffold_301850.1
Length=820
Score = 1295 bits (701), Expect = 0.0
Identities = 791/832 (95%), Gaps = 15/832 (2%)
Strand=Plus/Plus
Query 93 aagaaaataaaaa-taaaaatGGAATTAGTTGAAGAGACCATTCCAAAAGAAGGGAAAAA 151
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAGAAAATAAAAAGAAAAAATGGAATTAGTTGAAGAGACCATTCCAAAAGAAGGGAAAAA 61
Query 152 GATGGGAGAAAGAATTGTGGTCGACAAAGCTTATCTTTACCAAGAAGACAAACCACTCAC 211
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 62 GATGGGAGAAAGAATTGTGGTGGACAAAGCTTATCTCTACCAAGAAGACAAACCACTCAC 121
Query 212 CGTCTGCAAGACTTCTCTCTTCTACACCGGCGATGGCTTCGCCGCCTATGACTGCCGTGG 271
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 122 CGTCTGCAAGACTTCTCTCTTCTACACCGGCGATGGTTTCGCCGCCTATGATTGCAACGG 181
Query 272 TGATATCATCTTCAGGGTTGATTCTTATGGACCTGACACAAGAGATAACGATGAGATTGT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TGATATCATCTTCAGGGTTGATTCTTATGGACCTGACACAAGAGATAACGATGAGATTGT 241
Query 332 CCTCATGGACGCGACCGGGAAGTGTCTCCTTACCGTTAAACGAAAGAGACCAACTCTACA 391
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CCTCATGGACGCTACCGGAAAGTGTCTCCTTACCGTTAAACGAAAGAGACCAACTCTACA 301
Query 392 CCAAAGATGGGAAGGTTTTCTCGGCGAGAGATCGGAAGGTCAGAAACCGATATTCAGCGT 451
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 302 CCAAAGATGGGAAGGTTTTCTCGGCGAGAGATCGGAAGGTCAGAAACCGGTCTTCAGCGT 361
Query 452 CCGTAGATCGTCGATAATCGGACGGTGTACGATGGAAGTAGAAGTTTACGACGGAACAGG 511
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCGGAGATCTTCGATAATCGGACGGTGTACGATGGAAGTAGAAGTTTACGACGGAACAGG 421
Query 512 AGAAGAGTACATTATCGATGGAGACTTCTCGCAACGAAGCTGTCTCATATACGACACGAA 571
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 422 AGAAGAGTACATTATTGATGGAGACTTCTCGCAACGAAGCTGTCTCATATACGACACGGA 481
Query 572 GAAATGTACTGTGGCTGAGATCAAACGCAAAGTAGACGCGTCAACGAACGTGATGCTTGG 631
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TAAACGTACTGTGGCTGAGATCAAACGCAAAGTAGACGCGTCAACGAACGTGATGCTTGG 541
Query 632 TCGAGATGTGTTCACTCTAGAGATTAAACCGGGTTTTGATGGCGCTTTCGCGATGGGTTT 691
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 542 TCGAGATGTGTTCACTCTAGAGATTAAACCGGGTTTTGATGGCGCTTTCGCTATGGGTTT 601
Query 692 GGTCGTTGTGCTTGACCAGATCAACGGTGATGATCCAGTTGAGATTGGTGATGAACAGGT 751
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 602 GGTCGTTGTGCTTGACCAGATCAACGGTGATGATCCGGTTGAGATTGGTGATGAACAGGT 661
Query 752 ACACCCTTTTGTAGAGGATTAGTGTCGGtctctctctcacctctctcAGCGGTCTTCACG 811
||||||||||||||||||||| | | || | | ||||||| || ||||||||||
Sbjct 662 ACACCCTTTTGTAGAGGATTAAT--C--TC-C-C----ACCTCTCACAATGGTCTTCACG 711
Query 812 TTAACATATCGAATCTAATCTTTAGTTTTTCAATCTTTGGATTTGGACCATATGGGATTA 871
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 712 TTAACATATCGAATCTAATCTTTAGTTTTTCAATCTTTGGATTTGGACCATATG--ATTA 769
Query 872 TGG-AGATCTGTTTGTATCATTCTGTGTTAAGTCATTTAAGTTGCTACGTTA 922
||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 770 TGGGAG-TCTGTTTGTATCATTCTGTGTTAAATCATTTAAGTTGCTACGTTA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5