BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15820.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929394 jgi|Araly1|929394|scaffold_301851.1 1557 0.0
Ahg341711 jgi|Araly1|341711|fgenesh1_pg.C_scaffold_3001474 821 0.0
> Ahg929394 jgi|Araly1|929394|scaffold_301851.1
Length=969
Score = 1557 bits (843), Expect = 0.0
Identities = 928/970 (96%), Gaps = 2/970 (0%)
Strand=Plus/Plus
Query 122 TCCCTCTCCGTTAACCT-TAACGGCCATGTCAGCCGCCGCAGCTGAAACCGACGTCTCTC 180
|||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 TCCCTCTCCGTTAA-CTCTAACGGCCATGACAGCCGCCGCAACTGAAACCGACGTCTCTC 59
Query 181 TCCGTCGCAGATCTAACTCTCTTAACGGAAACCACACTAACGGCGTCGCCATTGACGGAA 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 TCCGTCGCAGATCTAACTCTCTTAACGGAAACAACACTAACGGCGTCGCCATTGACGGAA 119
Query 241 CCCTAGACAACAACAACCGTCGCGTCGGAGATACAAACACTCACATGGATATATCTGCTA 300
|||||||||||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||
Sbjct 120 CCCTAGACAACAACAATCGTCGCATCGGAGATACAAACACTCAAATGGAGATAACTGCTA 179
Query 301 AGAAAACTGACAACGGCTACGCCAATGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGT 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAAACTGACAACGGCTACGCCAACGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGT 239
Query 361 CGTTCACGACGTGGACGGCGCGTGATATCGTCTACGTGGTGAGATACCATTGGATACCGT 420
|||||| |||||||||||||||||| | || ||||||| ||||||||||||||||||||
Sbjct 240 CGTTCATGACGTGGACGGCGCGTGACGTTGTGTACGTGGCGAGATACCATTGGATACCGT 299
Query 421 GCATGTTCGCTGCCGGACTTCTGTTCTTCATGGGCGTGGAGTACACGCTTCAGATGATTC 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCATGTTCGCGGCCGGACTTCTGTTCTTCATGGGCGTGGAGTACACGCTTCAGATGATTC 359
Query 481 CCGCGAGATCTGAGCCGTTCGATCTTGGGTTTGTGGTCACGCGCTCTTTGAATCGCGTAT 540
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 360 CCGCGAGATCTGAGCCGTTCGATCTTGGATTTGTGGTCACGCGCTCTTTGAATCGCGTCT 419
Query 541 TAGCATCTTCACCGGATCTTAACACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAGCATCTTCACCGGATCTTAACACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGA 479
Query 601 TGCAAACAACGTATATTGTATGGACATGGTTAGTGGAAGGACGAGCACGAGCCACCATCG 660
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TGCAAACAACGTATATTGTATGGACATGGTTAGTGGAAGGACGAGCAAGAGCCACCATCT 539
Query 661 CGGCTTTATTCATGTTCACTTGTCGCGGCATTCTCGGCTACTCTACTCAGCTTCCTCTCC 720
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 CGGCTTTATTCATGTTCACGTGTCGCGGCATTCTCGGTTACTCTACTCAGCTTCCTCTCC 599
Query 721 CTCAGGACTTTCTAGGATCAGGGGTTGATTTTCCGGTGGGAAATGTCTCTTTCTTCCTCT 780
||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 600 CTCAGGATTTTCTAGGATCAGGAGTCGATTTTCCGGTAGGAAATGTCTCTTTCTTCCTCT 659
Query 781 TCTTCTCTGGCCATGTCGCCGGCTCGATGATCGCATCATTGGACATGAGAAGAATGCAGA 840
||||||| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 660 TCTTCTCGGGCCACGTTGCCGGCTCGATGATCGCATCGTTGGACATGAGGAGAATGCAGA 719
Query 841 GGTTGAGACTTGCAATGGTCTTTGACATCCTCAATGTATTACAGTCGATCAGACTGCTCG 900
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 720 GGTTGAGACTTGCGATGGTTTTTGACATCCTCAATGTATTACAGTCGATCAGGCTGCTCG 779
Query 901 GTACAAGAGGACATTACACAATCGACCTTGCGGTTGGAGTTGGCGCTGGGATTCTCTTCG 960
|||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 780 GTACGAGAGGACATTACACGATCGATCTTGCGGTTGGAGTAGGCGCTGGGATTCTCTTTG 839
Query 961 ACTCATTGGCCGGAAAGTACGAAGAGATGATGAGCAAGAGACATTTAGGCACTGGTTTTA 1020
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTCATTGGCCGGGAAGTACGAAGAGATGATGAGCAAGAGACATTTAGGCACTGGTTTTA 899
Query 1021 GTTTGATTTCGAAAGACTCTCTAGTCAATTAAATTTGTTTTCTATCAGAATGTTTAGTTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTTTGATTTCGAAAGACTCTCTAGTCAATTAAATTTGTTTTCTATCAGAATGTTTAGTTG 959
Query 1081 AGTTGAATCT 1090
||||||||||
Sbjct 960 AGTTGAATCT 969
> Ahg341711 jgi|Araly1|341711|fgenesh1_pg.C_scaffold_3001474
Length=894
Score = 821 bits (444), Expect = 0.0
Identities = 761/913 (83%), Gaps = 26/913 (3%)
Strand=Plus/Plus
Query 147 ATGTCAGCCGCCGCAGCTGAAACCGACGTCTCTCTCCGTCGCAGATCTAACTCTCTTAAC 206
||||||| ||| | | | |||||| || | |||||||||||| ||||||| || |||||
Sbjct 1 ATGTCAGACGCTGTAACCAAAACCGTCGCCCCTCTCCGTCGCAAATCTAACCCTATTAAC 60
Query 207 GGAAACCACACTAACGGCGTCG-CCATTGACGGAACCCTAGACAACAACAACCGTCGCGT 265
||||| ||||| |||||||| | |||||||||||||||| ||| || |||| || | |
Sbjct 61 GGAAAACACACAAACGGCGT-GACCATTGACGGAACCCTCGACGACCACAATCGCCAAAT 119
Query 266 CGGAGATACAAACACTCACATGGA-TATATCTGCTAAGAAAACTGACAACGGCTACGCCA 324
|| | || ||| | ||| ||||| | || |||||||||||||||| |||| ||
Sbjct 120 CGCA-AT--AAATAGTCAAATGGAGAACAT-TGCTAAGAAAACTGACGACGG---CG--G 170
Query 325 ATGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGTCGTTCACGACGTGGACGGCGCGTG 384
| | | | || || || ||||| ||||||||||||||| | |||||||||| || ||
Sbjct 171 A--G-G-AGAAGAAGCAGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGCATG 226
Query 385 ATATCGTCTACGTGGTGAGATACCATTGGATACCGTGCATGTTCGCTGCCGGACTTCTGT 444
| || || ||||||| |||| ||||||||||||| || | || || |||||| ||||||
Sbjct 227 ACATTGTTTACGTGGCGAGACACCATTGGATACCATGTTTATTTGCGGCCGGAGTTCTGT 286
Query 445 TCTTCATGGGCGTGGAGTACACGCTT-CAGATGATTCCCGCGAGATCTGAGCCGTTCGAT 503
| || | || ||||||||||| || ||||||| ||| ||||| ||| ||||||| |||
Sbjct 287 TTTTTACGGTTGTGGAGTACAC-ATTCCAGATGACTCCTGCGAGTTCTCAGCCGTTTGAT 345
Query 504 CTTGGGTTTGTGGTCACGCGCTCTTTGAATCGCGTATTAGCATCTTCACCGGATCTTAAC 563
|| || ||||||| ||| |||||| || || || | || |||||||||||| ||||||||
Sbjct 346 CTAGGATTTGTGGCCACACGCTCTCTGCATAGCATCTTGGCATCTTCACCGAATCTTAAC 405
Query 564 ACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGATGCAAACAACGTATATTGTATGG 623
|| ||||||||||| ||||||||| | || ||||||||||||||||||||||||| |||
Sbjct 406 ACCGTTTTAGCCGCTCTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGATGT 465
Query 624 ACATGGTTAGTGGAAGGACGAGCACGAGCCACCATCGCGGCTTTATTCATGTTCACTTGT 683
|||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 466 ACATGGGCAGTGGAAGGACGACCACGAGCGACCATCGCGGCTCTATTCATGTTCACTTGT 525
Query 684 CGCGGCATTCTCGGCTACTCTACTCAGCTTCCTCTCCCTCAGGACTTTCTAGGATCAGGG 743
||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||
Sbjct 526 CGCGGCATTCTCGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTTTAGGATCAGGA 585
Query 744 GTTGATTTTCCGGTGGGAAATGTCTCTTTCTTCCTCTTCTTCTCTGGCCATGTCGCCGGC 803
|| |||| |||||| ||||| ||||| ||||||||||||| ||| || || |||||||||
Sbjct 586 GTAGATTATCCGGTCGGAAACGTCTCGTTCTTCCTCTTCTACTCAGGTCACGTCGCCGGC 645
Query 804 TCGATGATCGCATCATTGGACATGA-GAAGAATGCAGAGGTTGAGACTTGCAATGGTCTT 862
|||||||||||||| |||||||||| || ||||||||||||| || || || ||||| ||
Sbjct 646 TCGATGATCGCATCGTTGGACATGAAGA-GAATGCAGAGGTTTAGGCTGGCGATGGTTTT 704
Query 863 TGACATCCTCAATGTATTACAGTCGATCAGACTGCTCGGTACAAGAGGACATTACACAAT 922
||||||||||||||| || || |||||||| ||||| ||||| ||||| |||||||| ||
Sbjct 705 TGACATCCTCAATGTCTTGCAATCGATCAGGCTGCTTGGTACGAGAGGGCATTACACCAT 764
Query 923 CGACCTTGCGGTTGGAGTTGGCGCTGGGATTCTCTTCGACTCATTGGCCGGAAAGTACGA 982
|| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 765 TGATATTGCGGTTGGAGTTGGCGCTGGGATTCTCTTTGACTCATTAGCCGGGAAGTACGA 824
Query 983 AGAGATGATGAGCAAGAGACATTTAGG--C-ACTGGTTTTAGTTTGATTTCGAAAGACTC 1039
|||||||| | ||||||||| ||| | | ||| ||| ||||||||| |||||||||||
Sbjct 825 AGAGATGA-G--CAAGAGACACTTAAGAACTACTCGTTGTAGTTTGATCTCGAAAGACTC 881
Query 1040 TCTAGTCAATTAA 1052
|||||||||||||
Sbjct 882 TCTAGTCAATTAA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5