BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15830.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341711 jgi|Araly1|341711|fgenesh1_pg.C_scaffold_3001474 1338 0.0
Ahg929394 jgi|Araly1|929394|scaffold_301851.1 833 0.0
> Ahg341711 jgi|Araly1|341711|fgenesh1_pg.C_scaffold_3001474
Length=894
Score = 1338 bits (724), Expect = 0.0
Identities = 843/899 (94%), Gaps = 13/899 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGACGCCGTAACCAAAACCGTCGCCCCTCTCCGTCGTAAAGCTAATCCTATTAAC 60
||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 1 ATGTCAGACGCTGTAACCAAAACCGTCGCCCCTCTCCGTCGCAAATCTAACCCTATTAAC 60
Query 61 GGAAAACACACTAACGGCGTCACCATCGACGGAATCTTCGACGACCACAATCGCCAAATA 120
||||||||||| |||||||| ||||| ||||||| | ||||||||||||||||||||||
Sbjct 61 GGAAAACACACAAACGGCGTGACCATTGACGGAACCCTCGACGACCACAATCGCCAAAT- 119
Query 121 GGACCAATAAATAGCCAAATGGAAG-ATATTGCTCAGAAAACTGATGACGGTGGA-G-G- 176
| |||||||||| ||||||| || | |||||| |||||||||| ||||| ||| | |
Sbjct 120 CG--CAATAAATAGTCAAATGG-AGAACATTGCTAAGAAAACTGACGACGGCGGAGGAGA 176
Query 177 AG--G-AGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGCATGACATAATTTA 233
|| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 177 AGAAGCAGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGCATGACATTGTTTA 236
Query 234 CGTGGCGAGACACCATTGGATACCGTGTTTATTCGCGGCCGGAGTTATGTTTTTTACGGT 293
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 237 CGTGGCGAGACACCATTGGATACCATGTTTATTTGCGGCCGGAGTTCTGTTTTTTACGGT 296
Query 294 TGTGGAGTACACGTTCCAGATGACTCCTGCGAGTTCTCAGCCGTTTGATCTAGGATTTGT 353
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGTGGAGTACACATTCCAGATGACTCCTGCGAGTTCTCAGCCGTTTGATCTAGGATTTGT 356
Query 354 GGCCACACGTTATCTGCATAGCATCTTGGCATCTTCACCCAATCTTAACACCGTTTTAGC 413
||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 GGCCACACGCTCTCTGCATAGCATCTTGGCATCTTCACCGAATCTTAACACCGTTTTAGC 416
Query 414 CGCTTTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGATGTACATGGGCAGT 473
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGCTCTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGATGTACATGGGCAGT 476
Query 474 GGAAGGACGACCACGGGCAACCATCGCGGCTTTATTCATGTTCACTTGTCGTGGCATTCT 533
||||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 477 GGAAGGACGACCACGAGCGACCATCGCGGCTCTATTCATGTTCACTTGTCGCGGCATTCT 536
Query 534 CGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTTTAGGATCAGGAGTAGATTATCC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTTTAGGATCAGGAGTAGATTATCC 596
Query 594 GGTCGGAAACGTGTCGTTCTTCCTCTTCTACTCAGGTCACGTCGCCGGATCGATGATCGC 653
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 GGTCGGAAACGTCTCGTTCTTCCTCTTCTACTCAGGTCACGTCGCCGGCTCGATGATCGC 656
Query 654 ATCGTTGGACATGAAGAGAATGCAGAGGTTTAGGCTGGCGATGGTTTTTGACATTCTCAA 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 657 ATCGTTGGACATGAAGAGAATGCAGAGGTTTAGGCTGGCGATGGTTTTTGACATCCTCAA 716
Query 714 TGTATTGCAATCCATCAGGCTGCTTGGTACGAGAGGACACTACACGATTGATATTGCGGT 773
||| |||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 717 TGTCTTGCAATCGATCAGGCTGCTTGGTACGAGAGGGCATTACACCATTGATATTGCGGT 776
Query 774 TGGAGTTGGCGCTGGGATTCTCTTTGACTCATTGGCCGGGAAGTACGAAGAGATGAGCAA 833
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 777 TGGAGTTGGCGCTGGGATTCTCTTTGACTCATTAGCCGGGAAGTACGAAGAGATGAGCAA 836
Query 834 GAGACATTTACGGAA-TACTCGTTGTAGTTTGATTTCAAAAGACTCTCTAGTCACTTAA 891
|||||| ||| | || |||||||||||||||||| || |||||||||||||||| ||||
Sbjct 837 GAGACACTTAAG-AACTACTCGTTGTAGTTTGATCTCGAAAGACTCTCTAGTCAATTAA 894
> Ahg929394 jgi|Araly1|929394|scaffold_301851.1
Length=969
Score = 833 bits (451), Expect = 0.0
Identities = 773/925 (84%), Gaps = 35/925 (4%)
Strand=Plus/Plus
Query 1 ATGTCAGACGCCGTAACCAAAACCGTCGCCCCTCTCCGTCGTAAAGCTAATC-CTATTAA 59
||| ||| ||||| ||| |||||| || | |||||||||| | | |||| | || ||||
Sbjct 26 ATGACAGCCGCCGCAACTGAAACCGACGTCTCTCTCCGTCGCAGATCTAA-CTCTCTTAA 84
Query 60 CGGAAAAC-ACACTAACGGCGTCACCATCGACGGAATCTTCGACGACCACAATCGCCAAA 118
||| |||| |||||||||||||| |||| ||||||| | | ||| || ||||||| | |
Sbjct 85 CGG-AAACAACACTAACGGCGTCGCCATTGACGGAACCCTAGACAACAACAATCGTCGCA 143
Query 119 TAGGACCA-ATAAATAGC-CAAATGGAAGAT-ATTGCTCAGAAAACTG---A----T--G 166
| ||| | | ||| | | ||||||| |||| | |||| ||||||||| | | |
Sbjct 144 TCGGA-GATACAAACA-CTCAAATGG-AGATAACTGCTAAGAAAACTGACAACGGCTACG 200
Query 167 ---AC-G-GT-GGAGGAGGAGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGC 220
|| | || |||||||||| ||||| ||||||||||||||| |||||||||||| ||
Sbjct 201 CCAACGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGTCGTTCATGACGTGGACGGCGC 260
Query 221 ATGACATAATTTACGTGGCGAGACACCATTGGATACCGTGTTTATTCGCGGCCGGAGTTA 280
|||| | | |||||||||||| |||||||||||||||| | |||||||||||| ||
Sbjct 261 GTGACGTTGTGTACGTGGCGAGATACCATTGGATACCGTGCATGTTCGCGGCCGGACTTC 320
Query 281 TGTTTTTTACGGTTGTGGAGTACACG-TTCCAGATGACTCCTGCGAGTTCTCAGCCGTTT 339
|||| || | || |||||||||||| || ||||||| ||| ||||| ||| |||||||
Sbjct 321 TGTTCTTCATGGGCGTGGAGTACACGCTT-CAGATGATTCCCGCGAGATCTGAGCCGTTC 379
Query 340 GATCTAGGATTTGTGGCCACACGTTATCTGCATAGCATCTTGGCATCTTCACCCAATCTT 399
||||| |||||||||| ||| || | | || || || |||| ||||||||||| |||||
Sbjct 380 GATCTTGGATTTGTGGTCACGCGCTCTTTGAATCGCGTCTTAGCATCTTCACCGGATCTT 439
Query 400 AACACCGTTTTAGCCGCTTTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGA 459
||||| ||||||||||| |||||||| | || ||||||||||||||||||||||||| |
Sbjct 440 AACACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGATGCAAACAACGTATATTGTA 499
Query 460 TGTACATGGGCAGTGGAAGGACGACCACGGGCAACCATCGCGGCTTTATTCATGTTCACT 519
|| |||||| ||||||||||||| || | || |||||| |||||||||||||||||||
Sbjct 500 TGGACATGGTTAGTGGAAGGACGAGCAAGAGCCACCATCTCGGCTTTATTCATGTTCACG 559
Query 520 TGTCGTGGCATTCTCGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTT-TAGGATC 578
||||| ||||||||||| |||||||||||||| |||| |||||||| ||||| |||||||
Sbjct 560 TGTCGCGGCATTCTCGGTTACTCTACTCAGCTTCCTCTCCCTCAGG-ATTTTCTAGGATC 618
Query 579 AGGAGTAGATTATCCGGTCGGAAACGTGTCGTTCTTCCTCTTCTACTCAGGTCACGTCGC 638
|||||| |||| |||||| ||||| || || ||||||||||||| ||| || ||||| ||
Sbjct 619 AGGAGTCGATTTTCCGGTAGGAAATGTCTCTTTCTTCCTCTTCTTCTCGGGCCACGTTGC 678
Query 639 CGGATCGATGATCGCATCGTTGGACATGAAGAGAATGCAGAGGTTTAGGCTGGCGATGGT 698
||| ||||||||||||||||||||||||| ||||||||||||||| || || ||||||||
Sbjct 679 CGGCTCGATGATCGCATCGTTGGACATGAGGAGAATGCAGAGGTTGAGACTTGCGATGGT 738
Query 699 TTTTGACATTCTCAATGTATTGCAATCCATCAGGCTGCTTGGTACGAGAGGACACTACAC 758
||||||||| ||||||||||| || || ||||||||||| |||||||||||||| |||||
Sbjct 739 TTTTGACATCCTCAATGTATTACAGTCGATCAGGCTGCTCGGTACGAGAGGACATTACAC 798
Query 759 GATTGATATTGCGGTTGGAGTTGGCGCTGGGATTCTCTTTGACTCATTGGCCGGGAAGTA 818
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 799 GATCGATCTTGCGGTTGGAGTAGGCGCTGGGATTCTCTTTGACTCATTGGCCGGGAAGTA 858
Query 819 CGAAGAGATGA-G--CAAGAGACATTTACGGAATACTCGTTGTAGTTTGATTTCAAAAGA 875
||||||||||| | ||||||||||||| || | || ||| |||||||||||| |||||
Sbjct 859 CGAAGAGATGATGAGCAAGAGACATTTA-GGCA--CTGGTTTTAGTTTGATTTCGAAAGA 915
Query 876 CTCTCTAGTCACTTAAATCTAtttt 900
||||||||||| |||||| | ||||
Sbjct 916 CTCTCTAGTCAATTAAATTTGTTTT 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5