BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15840.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929397 jgi|Araly1|929397|scaffold_301854.1 1358 0.0
> Ahg929397 jgi|Araly1|929397|scaffold_301854.1
Length=880
Score = 1358 bits (735), Expect = 0.0
Identities = 832/879 (95%), Gaps = 6/879 (1%)
Strand=Plus/Plus
Query 63 TTCTCATTAGATCGGTAT-CGATGGCTGCTGCCGCTAATACCTCCGCCGTTTTCGCCTCT 121
||||||| ||| |||| | | ||||||||||||||||||||| ||||| |||||||||||
Sbjct 2 TTCTCATCAGAACGGT-TCCCATGGCTGCTGCCGCTAATACCGCCGCCATTTTCGCCTCT 60
Query 122 CCGTCGCAGCCTTTATCCTCGAAACGTAGTTTTTTGTACAGTTCAAGGATTGGTCCAATA 181
|| ||||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||
Sbjct 61 CCTTCGCAGCCTTTATCCTCTAAACGGAGTTTTTTGTATAGTTCAACGATTGGTCCAATA 120
Query 182 CTAAGGAGATTTCCGAGGAAGAAACTTGATCTCCAAGTTAAAGCTGTTGCCACGACTCTT 241
|| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CTTAGGAGATTTCCAAGGAAGAAACTTGTTCTCCAAGTTAAAGCTGTTGCCACGACTCTT 180
Query 242 GCACCTCTCGAAGAGATCAAAGAATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGT 301
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GCACCTCTCGAAGAGATCAAAGAATATAAGCTTCCTTCATGGGCCATGTTCGAGATGGGT 240
Query 302 ACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCT-CAGGTGAAAAGTT 360
|||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||||
Sbjct 241 ACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCTCCAA-CTGCAGGTGAGAAGTT 299
Query 361 GAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTTAACGAAGACTATGGGGTTGC 420
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 300 GAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACACTTAACGAGGACTATGGGGTTGC 359
Query 421 TTTCAACGGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTCAACGGAGGATTTAACCAACCAATCATGTGTGGTGGGGAGCCAAGAGCAATGCTTAA 419
Query 481 GAAAGATCGAGGCAAAGCCGATTCTCCGATATACACTATGCAGATTTGCATTCCTAAGCA 540
||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct 420 GAAGGATCGAGGCAAAGCCGATTCTCCAATTTACACCATGCAGATTTGCATTCCAAAGCA 479
Query 541 TGCTGTGAATTTGATATTCTCATTCACTAATGGTGTCGATTGGGACGGTCCATACAGACT 600
||||||||||||||||||||| ||||| || ||| | || ||||| ||||||||||||||
Sbjct 480 TGCTGTGAATTTGATATTCTCGTTCACCAACGGTATTGACTGGGATGGTCCATACAGACT 539
Query 601 TCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGGGTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCAGTTTCAAGTCCCCAAGCGATGGCAAAACAAACCTATTGAGTTCTTCAATGAGGGTCT 599
Query 661 AGCGAACGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTTCCTGACTCGAACGT 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGCGAATGAGTTGAGCCAAGATGGAGCCTGCGAAAGAGCAATATTTCCTGACTCGAACGT 659
Query 721 TGTTCCAACTCGTTGCACGATGATCGCCAACTTGACGGTCGAAGGAGGAGATAGATGCAA 780
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTTGCAACTCGTTGCACAATGATCGCCAACTTGACGGTCGAAGGAGGAGATAGATGCAA 719
Query 781 CTTGGATCTAGTTCCTGGATGCATGGATACAAATTCAGAACATTTCAACCCATATGCTAA 840
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTGGATCTAGTTCCTGGGTGCATGGATACAAATTCAGAACATTTCAACCCATATGCTAA 779
Query 841 TGTTGATGATGGCTCTTGTCCCCTCGAGTTATCCGATTCTGATGAATAGAACTA-ATTTT 899
||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||
Sbjct 780 TGTTGATGATGGCTCTTGTCCACTCGATTTATCCGATTCTGATGAATAGAGCTAGATTTT 839
Query 900 TATTTATGTAAATATATATACACATATGTTAATATCAGT 938
||||||||||||||||| |||||| |||||||||||||
Sbjct 840 -ATTTATGTAAATATATAAACACATGTGTTAATATCAGT 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5