BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15850.1
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479040 jgi|Araly1|479040|fgenesh2_kg.3__1741__AT3G15850.1 1958 0.0
> Ahg479040 jgi|Araly1|479040|fgenesh2_kg.3__1741__AT3G15850.1
Length=1314
Score = 1958 bits (1060), Expect = 0.0
Identities = 1267/1358 (93%), Gaps = 49/1358 (4%)
Strand=Plus/Plus
Query 27 TAAGGGTTTAAGCCTCTTCTCTTCCTTCTTTCTCTTAGCCATCACATCGATAATGGCTTC 86
|||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 TAAGGGTTTAAGTCTCTTCTCTT--GGC-TTCTCTTAGCCATCACATCGATAATGGCTTC 57
Query 87 TCTTCTAACAAAACCCAAA-CCCGTTTTCCTCTGTTCACCATCGTTATCTCCAAGAACTT 145
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 58 TCTTTTAACAAAACCCAAAGCCC-TTTTCCTCTGTTCACCATCGTTATCTCCACGAACTT 116
Query 146 TGAACACAGCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCATCACCAAAAGC 205
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 117 TGAACACATCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCACCACCAAAAGC 176
Query 206 TTGCTCCTTTCAAGCCTCCTAGTCTCGTTGTTGCATTCTCTGAAAAGGGTTTGAAGAGAG 265
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 TTGCTCCTTTCAAGCCTCCAAGTCTCGTTGTTGCATTCTCTGAGAAGGGTTTGAAGAGAG 236
Query 266 ATGTCACCACAGCTGCTGCAGCGACGGAGGGAGATTACAGAAGGATAATGTTATCTGATG 325
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 237 ATGTCACCACAGCTGCTGCTGCGACGGAGGGAGATTACAGAAGGATAATGCTATCGGATG 296
Query 326 TGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGAGAATGGAAAGCTATGGACT 385
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 297 TGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGGGAATGGAAAGCGATGGATT 356
Query 386 TTGGAGCTGTTGCTGTCGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAAT 445
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 357 TTGGAGCTGTTGCTGTGGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAGT 416
Query 446 TCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTCTGGGGA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 417 TCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTTTGGGTA 476
Query 506 TTACTCTGTCTTTCCATAGGAATCTTTCTCATAAAGCCTTCAAGCTACCTAAATGGCTTG 565
|||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||
Sbjct 477 TTACTCTGTCTTTCCATAGGAATCTTTCTCATAAGGCTTTCAAGCTTCCCAAATGGCTTG 536
Query 566 AGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGA 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGA 596
Query 626 GTACACATAGGTACCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGCCCACTTG 685
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 597 GTACACATAGGTATCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGTCCACTTG 656
Query 686 ATGGGTTTTGGTTCAGTCACATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGT 745
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATGGGTTTTGGTTCAGTCATATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGT 716
Query 746 GTGGAGAGCCTAATAATGTTGGGGACTTGGAGAAGCAGCCATTCTATCGATTCCTTCGAA 805
||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||
Sbjct 717 GTGGAGAGCCTAATAATGTTGGGGATTTGGAGAAGCAACCATTCTATCAATTCCTTCGAA 776
Query 806 CCACCTACATTTTGCATCCGCTGGCTCTAGCGGTTGCTTTATACGCAATGGGTGGCTTTC 865
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 777 CCACCTACATTTTGCATCCGGTGGCTCTAGCGGTTGCTCTATACGCAATGGGTGGCTTCC 836
Query 866 CATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTATATCATATAACTTGGCTAG 925
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 837 CATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTGTATCATATAACTTGGCTAG 896
Query 926 TGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGA 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGA 956
Query 986 ACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCACCATGCTT 1045
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 ACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCATCATGCTT 1016
Query 1046 TTGAGTTCTCAGCTCGACACGGCTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCG 1105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTGAGTTCTCAGCTCGACACGGTTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCG 1076
Query 1106 TTAAGTTCCTTCAAGCCATCGGTTTAGCAACTGATGTCAAGCTCCCATCGGAAGCTCAGA 1165
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 TTAGGTTTCTTCAAGCCATCGGTTTAGCAACCGATGTCAAGCTCCCATCGGAAGCTCAGA 1136
Query 1166 AACAAAGAATGGCATTCACCAGCGACTGATCTTAAAAAACTACATGGTTATGCCTAAAGT 1225
|||||||||||||||| |||| | | || | | | | | | || ||
Sbjct 1137 AACAAAGAATGGCATTGACCA--G-C-GA-C-T----GA-T-C-----T-TG----AA-- 1172
Query 1226 CAAAACTGTCGGTTCGATTGAAGCTATGAAGGTTTTAAAAAAGGATTTTGTTCTGCTTTT 1285
|||||||||||| |||||||||||||||||||||| |||| | ||||
Sbjct 1173 -AAAACTGTCGGTACGATTGAAGCTATGAAGGTTTT--AAAA--A-----------TTTT 1216
Query 1286 TTGTGTTTACTTAAAGGTATATATCTGTGCAAGAGATTGTATGTGACAAACTGATTATGA 1345
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 TTGTGTTTACATAAAGGTATATATCTGTGCAAGAGATTGTATGTGACAAACTGATTATGA 1276
Query 1346 AT---AA-TATCTATAATTACATTCAATACAAAAGGAA 1379
|| || ||||||||||||||||||||||||||||||
Sbjct 1277 ATTTTAAATATCTATAATTACATTCAATACAAAAGGAA 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51694675452
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5