BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15860.1
Length=513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929399 jgi|Araly1|929399|scaffold_301856.1 754 0.0
> Ahg929399 jgi|Araly1|929399|scaffold_301856.1
Length=550
Score = 754 bits (408), Expect = 0.0
Identities = 476/509 (94%), Gaps = 3/509 (1%)
Strand=Plus/Plus
Query 1 ATGGATCTAAACAACAACAAGAGCAACAACATCGTCAAAACCCTAGCTCGATGGTGTCTT 60
|||||||| ||||||||| | | || |||||| ||||||||||||||||||||||||||
Sbjct 21 ATGGATCTTAACAACAAC-A-A-CAGCAACATTTTCAAAACCCTAGCTCGATGGTGTCTT 77
Query 61 CTTTTACAAGCTTTCATGATCTCGTCCAACACCGTGGCTCTTAAGGAACCAGACTACGTA 120
||| ||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 78 CTTCTACAAGCCTTCATGATCTCGTCCAAGACCGTGGCTCTGAAGGAACCTGACTACGTA 137
Query 121 AACATGAACATAACAATCCGTAACTCAATGACGGGATTAATCCGCCCGGAAATCGTGTAT 180
|||||||||||||||||||||||| ||||||| |||||| |||| |||||||| || ||
Sbjct 138 AACATGAACATAACAATCCGTAACGCAATGACAGGATTACTCCGACCGGAAATTGTTTAC 197
Query 181 CGATGCCAATCTAAACGCAAAGACTATGGTTGGCATCGATCTCCAAAGCCAGGAGTCCAA 240
|||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 198 CGATGCCAGTCTAAACACAAAGACTATGGTTGGCATCGATCTACAAAGCCAGGAATCCAA 257
Query 241 TTTTCATTCCCAATCATCCTCATAAAAGGCGAAACCAAAATACCAGCGATTCACATCTGC 300
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 258 TTTTCATTCCCAATCATCCTCATAAAAGGCGAAAACAAAATACCGGCGATTCACATCTGC 317
Query 301 CAAATCCGGTCCGTGTTAGGAACGGCTACACTCGTGATCCAAAACACCTATCTGGACGCT 360
|| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 318 GAATTCCGGTCCGTCTTAGGAACGGCTACACTCGTGATCCAAAACACCCATCTGGACGCC 377
Query 361 GAGATGTGCCCTAGATCGTCGTGTGCTCACGAGGCAACCCCGAAAGGAATTGTGTTTAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GAGATGTGCCCTAGATCGTCGTGTGCTCACGAGGCAACCCCGAAAGGAATTGTGTTTAGA 437
Query 421 GGCCTTGAGTGGGATTTCAAAACCGTGTTTCCTAAACTCAAACCAGTTGAGTATCTAGAA 480
|||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 438 GGCCTTGAATGGGATTTCAGAACCGTATTTCCTAAACTCAAACCAGTTGAGTATCTAGAA 497
Query 481 TTGCCGTGGACACCTTGGCCAAACAGAAC 509
|||||||||||||||||||||||||||||
Sbjct 498 TTGCCGTGGACACCTTGGCCAAACAGAAC 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18658083021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5