BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15890.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479045 jgi|Araly1|479045|fgenesh2_kg.3__1746__AT3G15890.1 1991 0.0
> Ahg479045 jgi|Araly1|479045|fgenesh2_kg.3__1746__AT3G15890.1
Length=1363
Score = 1991 bits (1078), Expect = 0.0
Identities = 1280/1374 (93%), Gaps = 27/1374 (2%)
Strand=Plus/Plus
Query 8 AATCTCACATCGAGACGAAATTAGAGCTACTCAGACTTGTTCTATTAAACTGTTACCTTC 67
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AATCTCACATCGAGACGAAATTAGAGCTACTCAGACTTGTTCTATTACACTGTTACCTTC 60
Query 68 TCCAGACAAAGCGTTACCttttt-tt-ttGGTCCGTACGAGGAAAAATCTAGGAGACAGA 125
|||||| |||||||||||||||| || || |||||||||||||| |||||||||||||||
Sbjct 61 TCCAGAAAAAGCGTTACCTTTTTATTGTTTGTCCGTACGAGGAAGAATCTAGGAGACAGA 120
Query 126 GCTATTTGTTCGAAAGATGCAACTTTTAAATAGCTGTTGTGGAAAAGGATTTGATGGGAA 185
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GCTATTTGTGCGAAAGATGCAACTTTTTCATAGCTGTTGTGGAAAAGGATTTGATGGGAA 180
Query 186 GAAGAAAGAAAAGGAAGAGCCATCTTGGAGGGTATTTTCACTGAAGGAACTTCATGCAGC 245
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 181 GAAGAAAGAAAAGGAAGAGCCATCTTGGAGGGTATTTTCATTGAAGGAACTTCATGCGGC 240
Query 246 CACCAACAGTTTCAATTACGATAACAAACTCGGTGAAGGTCGATTTGGTAGTGTCTATTG 305
||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 241 CACTAACAGTTTCAATTATGATAACAAACTCGGTGAAGGCCGATTCGGTAGTGTCTACTG 300
Query 306 GGGTCAGCTATGGGATGGCTCACAAATTGCAGTCAAGAGGTTGAAGGAATGGAGTAATAG 365
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 301 GGGTCAGCTATGGGATGGATCACAGATTGCAGTCAAGAGATTGAAGGAATGGAGTAACAG 360
Query 366 AGAAGAGATAGATTTTGCTGTGGAAGTCGAGATTCTTGCTCGTATTCGTCACAAGAATTT 425
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 AGAGGAGATTGATTTTGCTGTGGAAGTCGAGATTCTTGCCCGTATTCGTCACAAGAATTT 420
Query 426 GTTGAGTGTTCGTGGCTACTGTGCTGAAGGACAAGAACGTCTTCTTGTGTACGAGTACAT 485
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 421 GTTGAGTGTTCGTGGCTACTGTGCAGAAGGCCAAGAACGTCTTCTTGTGTACGAGTACAT 480
Query 486 GCAGAATTTGAGCTTGGTTTCACATCTTCATGGCCAGCATTCAGCTGAATGTCTTCTAGA 545
|| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 481 GCCTAATTTGAGCTTAGTTTCGCATCTTCATGGCCAGCATTCAGCTGAATGCCTTTTAGA 540
Query 546 TTGGACCAAGCGAATGAAGATCGCCATAAGCTCTGCTCAGGCCATTGCCTACCTACACGA 605
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 TTGGACCAAGCGGATGAAGATCGCCATAAGCTCTGCTCAGGCTATTGCCTACCTACACGA 600
Query 606 CCACGCAACCCCACATATAGTCCATGGAGATGTGAGAGCTAGCAATGTGTTGTTAGACTC 665
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 601 CCACGCAACCCCACATATAGTCCATGGAGATGTGAGAGCTAGCAATGTGTTACTAGATTC 660
Query 666 TGAATTTGAAGCTCGCGTTACAGATTTTGGTTATGGTAAGCTGATGCCAGATGATGATAC 725
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |
Sbjct 661 TGAATTTGAAGCTCGGGTTACAGATTTTGGATATGGTAAGCTGATGCCAGATGAT-A--C 717
Query 726 TGGAGATGGAGCTACCAAAGCCAAAAGTAATAATGGATATATCTCACCAGAATGTGATGC 785
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 TGGAGATAGAGCTACCAGAGCCAAAAGTAATAATGGATATATCTCACCAGAATGTGTTGC 777
Query 786 ATCAGGAAAAGAATCAGAAACTAGCGATGTGTACAGTTTTGGTATCCTTTTGA-TGGTAC 844
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 778 ATCAGGAAAAGAATCAGAAACTAGCGATGTGTACAGTTTCGGTATCCTTTT-ACTGGTAC 836
Query 845 TGGTTAGTGGCAAGAGACCACTCGAGAGGCTAAATCCAACAACAACGCG-GTGTATAACA 903
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 837 TGGTTAGTGGCAAGAGACCACTCGAAAGGCTAAATCCAACAACAACGCGAG-GTATAACC 895
Query 904 GAGTGGGTTTTACCACTTGTTTATGAAAGAAATTTTGGTGAAATCGTTGATAAGAGGCTG 963
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 896 GAGTGGGTTTTACCACTTGTTTACGAAAGAAAGTTCGGTGAAATCGTTGATAAGAGGCTG 955
Query 964 AGCGAGGAGCATGTGGCAGAGAAACTGAAGAAAGTAGTCTTGGTGGGGCTTATGTGTGCT 1023
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 956 AGCGAGGAGCATGTGGAAGAGAAGCTGAAGAAAGTAGTCTTGGTGGGGCTTATGTGTGCT 1015
Query 1024 CAGACAGATCCAGACAAGAGACCAACAATGTCTGAAGTGGTGGAGATGCTGGTGAATGAA 1083
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1016 CAGACAGATCCAGACAAGAGACCAACAATGTCTGAGGTCGTGGAGATGCTGGTGAATGAA 1075
Query 1084 TCAAAGGAGAAAATATCTGAACTTGAAGCTAATCCCCTCTTCAAGAATCCATATAGCAGC 1143
|||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 1076 TCAAAGGAGAAAATGTCAGAACTTGAAGCCAATCCGCTCTTCAAGAATCCATATAGCAAC 1135
Query 1144 AACGAAAACAATAGAGAGCATGTTGCAGAGGAAAGCTCAGATGTGATCTTAGAAGATAAA 1203
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |||
Sbjct 1136 AACGAAAACAATAGAGAGCATGTTTTAGAGGTAAGCTCAGATGTGATCTCAGAAGAGAAA 1195
Query 1204 GATCATCAACAACAACAAGAATAGCAATGGTTAGGCACAGTAATTCGTTTGG-CAGATTA 1262
||||| | ||||| ||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 1196 GATCA--A-CAACATCAAGAATAGGAATGGTTAGGCACAGGAATTCGTTTGCTCAGATTA 1252
Query 1263 TTTTT-A-GAGGTC-TTGCTTAttttttttAGTGTGTTTCTTGGTTCATA----A-AA-- 1312
||||| | || || |||||||||||||| ||||||||||||||||||| | ||
Sbjct 1253 TTTTTTATGA--TCATTGCTTATTTTTTTG-GTGTGTTTCTTGGTTCATATTTCATAACA 1309
Query 1313 TTGATTTGATCATTACTG-ATACTGGAGTTTGTAAGGTGTGGTATTGGCACATA 1365
|||||||||||||||||| ||| | |||||||||||||||||||||||| ||||
Sbjct 1310 TTGATTTGATCATTACTGGATATTAGAGTTTGTAAGGTGTGGTATTGGCTCATA 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5