BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15900.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479046 jgi|Araly1|479046|fgenesh2_kg.3__1747__AT3G15900.1 933 0.0
> Ahg479046 jgi|Araly1|479046|fgenesh2_kg.3__1747__AT3G15900.1
Length=704
Score = 933 bits (505), Expect = 0.0
Identities = 629/685 (92%), Gaps = 23/685 (3%)
Strand=Plus/Plus
Query 9 TAGTTTGTTATGAAAGTGAGTGAAAACGCAAACGTGGGTTTGT-GGGGAGCGTTTGCGTT 67
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1 TAGTTTGTTATGAAAGTGAGTGAAAACGCAAACGTGGG-TTGTGGGGGAGCGCTTGCGTT 59
Query 68 CTAAAGTTTCAAGAATCGACGCAAAACGTGAGATGTGTTTTT-GGTAAGCGTCGTGTCTC 126
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 60 CTAAACTTTCAAGAATCGACGCAAAACGTGAGATGTGTTTTTAGGTAGGCGTCGTG---- 115
Query 127 TCTCTCTTATCCTCTGTTCACGCCATTCACAAGCCTGTGTGACCAC---AAAATACGACA 183
|| |||||||||||||||||||||||||| |||||||| || |||| |||| ||||||
Sbjct 116 TCGCTCTTATCCTCTGTTCACGCCATTCATAAGCCTGTATGGCCACAAAAAAAAACGACA 175
Query 184 GAATTAGAGAG-AAA-AGATAGAGAG--ATGTCAGGTTCTGTCTTCGTTCCCGGTATGGC 239
|| |||||||| ||| ||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 176 GATTTAGAGAGAAAAGAGAGAGAGAGATATGTCAGGTTCTGTTTTCGTTCCCGGTATGGC 235
Query 240 GATTGGAGTTCCCACGCTTTCTCGTTCGAGCTCTGTTCACCGGAGCTTAGAACCGACGAA 299
|||||||||||| |||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 236 GATTGGAGTTCCGACGCTTTCTCGTTCGAGCTCTGCTCACCGGAGCTTGGAACCCACGAA 295
Query 300 GAAGATGACTATGAGTAGTGTCAAATTCGTGACCAGTTTTCGAAACCCGTCAAACTGTTC 359
||||||||| |||| || ||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 296 GAAGATGACAATGACTAATGTCAAATTCGTGACCATTTTTCGAAATCCGTCAAGCTGTTC 355
Query 360 AGGGACAAAACGGTCATTTCGCGTTA-TGGCTTCCGATGACCGGTCGGAACAAGCAGATA 418
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 356 AGGGACAAAACGGTCATTTCGCGTTACT-GCTTCCAATGACCGGTCGGAACAAGCAGATA 414
Query 419 ACGGTCAAGGAATTCAGGAGGACTTAAACTACTTGTTGAAGATCGGAGTTGGTTCAGTGG 478
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ACGGTCAAGGAGTTCAGGAGGACTTAAACTACTTGTTGAAGATCGGAGTTGGTTCAGTGA 474
Query 479 CAGGTGCAGCTATAATCAAATACGGAAGTGTCTTGTTCCCACAGATCACAAGACCTAATC 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CAGGCGCAGCTATAATCAAATACGGAAGTGTCTTGTTCCCACAGATCACAAGACCTAATC 534
Query 539 TCACTCTAGCCCTCTTCATTATCATAGCTCCTGTTGTAATCTCCGTTATCCTTTTGTCCC 598
||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||
Sbjct 535 TCACTCTGGCCCTCTTCATTATCATCGCTCCTGTTGTAATCTCTGTTCTCCTTTTGTTCC 594
Query 599 TATCATCATCATCTTCCTCCAAGAAACAGAACTGATTGGT--TaaaaaaaTGTGTAAATG 656
||||||||||||| | ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 595 TATCATCATCATC--C-TCCAAGAAACACAACTGATTGGTAATAAAAAAA-GTGTAAATG 650
Query 657 TATTTCACCTCATTGTGAAAAAGAT 681
|| |||| ||||||||||||| |||
Sbjct 651 TAATTCAGCTCATTGTGAAAA-GAT 674
Score = 56.5 bits (30), Expect = 3e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 692 GATGAGAAAGTTTCAGTATAATCCAGAATAAAA 724
||||||||||||||||||||||||||||| |||
Sbjct 672 GATGAGAAAGTTTCAGTATAATCCAGAATTAAA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5