BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15920.1
Length=2494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479047 jgi|Araly1|479047|fgenesh2_kg.3__1748__AT3G15920.1 3655 0.0
> Ahg479047 jgi|Araly1|479047|fgenesh2_kg.3__1748__AT3G15920.1
Length=2382
Score = 3655 bits (1979), Expect = 0.0
Identities = 2258/2391 (94%), Gaps = 26/2391 (1%)
Strand=Plus/Plus
Query 13 gatcgagaaaggagaagaag--gaatcaagagagtagaaaggaaATGAATCTATACGCGC 70
|||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 1 GATCGAGAGAGGAGAAGAAGAATAATCAAGAGAGTAAAAAGGAAATGAATCTCTACGCGC 60
Query 71 ACGATCTTTCTCTTCTCGATTTCAATTACAACGTCTCCGGTCCCTTCGGCGAGCCACTAT 130
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 ACGATCTTTCTCTTCTTGATTTCAATTACAACGTCTCCGGTCCCTTCGGCGAGTCGCTAT 120
Query 131 CTCACCGCTTCCTCTCTCCTGGCCCTTTCTTCCAAGGCGAAGAAGACGATTACCGCCG-T 189
|||||||||||||||| |||||||||||||||||||| || || |||||||| ||||| |
Sbjct 121 CTCACCGCTTCCTCTCGCCTGGCCCTTTCTTCCAAGGTGAGGACGACGATTATCGCCGTT 180
Query 190 A-A-TACGAGCTACAGTCACGACGGAGCTAATGGACGAGAACCGGACA-CAGATTCAAGA 246
| | || ||||||||||||||||||||||||||||||||| | || | || ||||||||
Sbjct 181 ATACCACCAGCTACAGTCACGACGGAGCTAATGGACGAGAAGCAGATACCA-ATTCAAGA 239
Query 247 GCATCTCCGCCGCATCGCCACGACGGGAGGTCTCCGTTACCTCTGGGAATGGATTGGAGT 306
| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 240 GTATCTCCGCCGCATCGCCACGACGGAAGGTCTCCGTTACCTCTGGGGATGGATTGGAGT 299
Query 307 TCTCCTCCTCGTCATTTGGAAGGAAGGGACACGGTTTGGCCACATGA-TCATCGAACTGG 365
||||||||||||| ||||||||| || |||||||||||||||| || || |||||||||
Sbjct 300 GCTCCTCCTCGTCACTTGGAAGGACGGAACACGGTTTGGCCACACGATTC-TCGAACTGG 358
Query 366 TTGGAGTTACTGTGTCACTGTCCCTTCTTGGGTTGACCTTCCCAAGTCAAGCGTTTCAGA 425
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 TTGGAGTTACTGTGTCACTGTCCCCTCTTGGGTTGACCTTCCCAAGTCAAGCGTTTCAGA 418
Query 426 TCCTGCCGTGTTTTATAGAGTGCAAGTAGCGATACAATCTCCTGAGGGAATCACTTCTGC 485
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 TCCCGCCGTGTTTTATAGAGTGCAAGTGGCGATACAATCTCCTGAGGGAATCACTTCTGC 478
Query 486 TAGGCTGGTACTTAGGAGGTTCAATGATTTCTTGGAGTTATATTCGTCTATTAAAAAGGA 545
|||| || ||||||| || || ||||||||||||||||||||||||||||||| ||||||
Sbjct 479 TAGGATGATACTTAGAAGATTTAATGATTTCTTGGAGTTATATTCGTCTATTAGAAAGGA 538
Query 546 GTTTGTGAAGAAAAGCTTACCCCAGGCACCACCAAAGAAGATTCTGAGGATGAGAAACCA 605
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 GTTTGTGAAGAAAAGCTTACCCCAGGCACCACCAAAGAAGATTTTGAGGATGAGAAACCA 598
Query 606 GACACTTTTGGAAGAGAGGAGGTGCTCTCTGGAAGATTGGATGAATAGACTTTTGTCAGA 665
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 GACACTTTTGGAAGAGAGGAGGTGTTCTCTGGAAGATTGGATGAATAGACTTTTGTCAGA 658
Query 666 TATTGATATATCCAGAAGCGCTCTTATAGCTACATTTCTTGAGCTTGAAGCTGCTGTCAG 725
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 659 TATTGATATATCTAGAAGCGCTCTGATAGCAACATTTCTTGAGCTTGAAGCTGCTGTCAG 718
Query 726 GTCTTATTTTAATGATGAATATCAAGAAACTGAAGATACCTCTGGGGACATTCCGTCACT 785
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||
Sbjct 719 GTCTTATTTTAACGATGAATATCAAGAAACTGAAGGTACCTCTGGGGATATTCCGCCACT 778
Query 786 TCTACCTACCACCA-TCTCTGATGTCCCTGGTAGTTCATCAGTTACCATAGATCATGA-C 843
|||||||||||||| | |||||||| ||||||||||||||||||||| |||||||| | |
Sbjct 779 TCTACCTACCACCAGT-TCTGATGTTCCTGGTAGTTCATCAGTTACCGTAGATCAT-ACC 836
Query 844 AATGATTCTGCTGATGAGACATCTAATGCCTCAACAATGAAGCATGACGAAGCTAATCTC 903
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||
Sbjct 837 AATGATTCTGCTGATGAGACATCTGATGCCTCAACAGTGAAGCATGACGATGCTAGTCTC 896
Query 904 AAAAATCTTTTCTCAAGGAATTCAACTGCTGTAGATAATGTGACTGATTGGCATGAGTTG 963
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 897 AAAAATCTTGTCTCAAGGAATTCAACTTCTGTAGATAATGTGACTGATTGGCATGAGTTG 956
Query 964 ATCACAGAATATGGACTTCTAGATCAAAGTTCTTTTCAGGAAAAAGTTGAACGTCTTTCT 1023
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 957 ATCTCAGAATATGGACTTCTAGATAAAAGTTCTTTTCAGGAAAAAGTTGAACGTCTTTCT 1016
Query 1024 AGTACTAATGGAGATGCAGCAACTGGTACCGTAACCAGAGGGGGCATTTCTAGTGGAGTT 1083
||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1017 AGTACTAATGGAGCTGCAGCAACTGGTACCGTAACCGGAGAGGGCATTTCTAGTGGAGTT 1076
Query 1084 GGAATTCAGAGGTTGGATGGAAGTGATAGAAAGTTTCAAGAACTGACCATTGAAAGCATT 1143
|| ||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1077 GGGATTCAGAGGTTGGATGGAAGTGATAGAAAGTTTCAAGAAAAGATCACTGAAAGC--- 1133
Query 1144 aaaaaaaCTCATGTAAGCGATTTTGAGGCGTCAACTGCTGTGGAACCTGATTTAGTTAAC 1203
|| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1134 AATAAAACTCATGTAAGCGATTTTGAGGCGTCAACTCCTGGGGAACCTGATTTAGTTAAC 1193
Query 1204 CAAGGCGCTATGGATATTCATGGTGAAGCCCATGGAAACATGTATGGTGCAGTAGGTGGA 1263
|||||| | |||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1194 CAAGGCTCGATGGATATTCATGGTGAAGCTCATGGAAACATGTATGGTGCGGTTGGTGGA 1253
Query 1264 GATACTGAGACTCAGAAGGATCTTGCTATTGTATTTCAGTCTGAGGAGCGACATAAATTA 1323
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 1254 GATACTGAGACTCAGAAGGATCTGGCTATTGTATTTCAGTCTGAGGAGAGACATAAGTTA 1313
Query 1324 AAGAGGGTTATTGATACATTAAAGCAGAGACTGGAAACAGCAAAAGCTGACACGGAAGAT 1383
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AAGAGGGTTATTGATACGTTAAAGCAGAGACTGGAAACAGCAAAAGCTGACACGGAAGAT 1373
Query 1384 CTTATCTCAAGGCTGAATCAGGAGTTAGCCGTTCGACAATTTCTGTCAACAAAGGTAAGA 1443
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1374 CTTATCTCAAGGCTGAATCAGGAGTTAGCTGTTCGACAGTTTTTGTCAACAAAGGTAAGA 1433
Query 1444 GATTTAGAGGTTGAACTTGAAACAACTCGAGAGAGCTGCAAGCAAGGCATGGAGAAAACA 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GATTTAGAGGTTGAACTTGAAACAACTCGAGAGAGCTGCAAGCAAGGCATGGAGAAAACA 1493
Query 1504 GTCCTAGATGAAAAGGAAAGATTTACTCAAATTCAGTGGGATATGGAGGAACTCCGCAAG 1563
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GTTCTTGATGAAAAGGAAAGATTTACTCAAATTCAGTGGGATATGGAGGAACTCCGCAAG 1553
Query 1564 CAATGCATGGAAATGGAATCGTTTTTAAACTCTATAAAGGACGAGAAAACACATATTGAG 1623
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1554 CAATGCATGGAAATGGAATCGTTGTTAAACTCTATAAAGGACGAGAAAACACATATTGAG 1613
Query 1624 ACTGCAAATGAGTCACTTGTTCAAGAAAATCAGATGTTGCTGCAGCAGATCAATGATATA 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 ACTGCAAATGAGTCACTTGTTCAAGAAAATCAGATGTTGCTGCAGCAGATCAATGATATA 1673
Query 1684 AGAGAAAATTTTGAGAATTTTCATAAAGAACACGAAGAGCTGGAAGTGAAAGCGAAAGCA 1743
||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 1674 CGAGAAAATTTTGAGAATTTTCATAAAGAACATGAAGAGCTGGAAGTAAAATCGAAAGCA 1733
Query 1744 GAGCTGAAAGTCCTCGTTAAAGAGGTCAAGTCTCTCCGAACCACTCAATCAGATTTGAGA 1803
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1734 GAGCTGAAAGTTCTCGTCAAAGAAGTCAAGTCTCTCCGAACCACTCAATCAGAATTGAGA 1793
Query 1804 CAAGAGCTTAG-CGGCATAATGAAAGAAAAACTGGAGATGGAGAGAATTGTTCAACGGGA 1862
||||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1794 CAAGAGCTTAGTCG-CACAATGAAAGAAAAACTGGAGATGGAGAGAATTGTTCAACGCGA 1852
Query 1863 GAAGGATAGAGAAGAAACTGCAAAAAACGCAGACAAGAAGTTGCTGCATGAGTGTGATGT 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 GAAGGATAGAGAAGAAACTGCAAAAAACGCAGACAAGAAGTTGCTGCATGAGTGTGATGT 1912
Query 1923 TCTACAAAACCGGCTTCAAGAATGCAATGTCAAGTTCGACATTGAAGAGGAGGGTAAATT 1982
||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 1913 TCTACAAAATCGGCTTCAAGAGTGCAATGTCAAGTTCCACATTGAAGAGGAGTGTAAATT 1972
Query 1983 AATAATGGACTCATCATCTCTATCCGAAGCCATCGAGCTACTAGCAACATCCGATAACCG 2042
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1973 AATAATGGACTCATCATCTCTCTCTGAAGCCATCGAGCTACTAGCAACATCCGATAACCG 2032
Query 2043 AATAGGTCTTCTAATTGCTGAGACGCAGCTTCTCTCAGAGGAAGTGGAAAAGCTGAAGCT 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 AATAGGTCTTCTAATTGCTGAGACGCAGCTTCTCTCAGAGGAAGTGGAAAAGCTGAAGCT 2092
Query 2103 AACATCAGGAGGGCATCGTGGAACAGACGATCTAGTAAGGAAGATGCTGACAGAGGTTCT 2162
| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2093 ATCATCAGGAGGGCATCGTGGAACAGACGATGTAGTGAGGAAGATGCTGACAGAGGTTCT 2152
Query 2163 GATTGATAATGCCAGATTAAGGAAGCAGGTTAACTCTGTTCTTCGTTGCTCTTTGTCCGG 2222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 GATTGATAATGCCAGATTAAGGAAGCAGGTTAACTCTGTTCTTCGTTGCTCTTTGTCCGG 2212
Query 2223 ACATGGAATATCAGTCAGAGAAGCCGGAACAGAAGTAGA--T-GACGA--A-GAAGGAAG 2276
||||||| ||||||||||||||||||||||||||| ||| | || || | ||||||||
Sbjct 2213 ACATGGAGTATCAGTCAGAGAAGCCGGAACAGAAGAAGAAGTAGAAGAGCAAGAAGGAAG 2272
Query 2277 TATTGATCTAGCAAGAACTGTTATGAGCAAGATCCTTGAGAAATGATTTGATCAGGTTTT 2336
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2273 TATTGATCTAGCAAGAACTGTTATGAGCAAGATCCTTGAGAAATGATTTTACCAGGTTTT 2332
Query 2337 TCGTGAAACTAAGCTAATCT-CAAATGGTTTTATCTTTCTGAAAATACTGT 2386
| ||||||||| |||||| | ||||||||||||||||| | ||||||||||
Sbjct 2333 TAGTGAAACTATGCTAAT-TACAAATGGTTTTATCTTTTTAAAAATACTGT 2382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94006724660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5