BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15935.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 333 2e-90
Ahg929120 jgi|Araly1|929120|scaffold_301577.1 311 8e-84
Ahg937320 jgi|Araly1|937320|scaffold_501511.1 263 2e-69
Ahg946515 jgi|Araly1|946515|scaffold_702744.1 220 1e-56
Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1 117 2e-25
Ahg929149 jgi|Araly1|929149|scaffold_301606.1 111 9e-24
> Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915
Length=1782
Score = 333 bits (180), Expect = 2e-90
Identities = 345/422 (82%), Gaps = 21/422 (5%)
Strand=Plus/Plus
Query 671 GAAGATTTTTTACTCTATTTTGATTTCT-CCACAGAGAGGTTTGAACCGCGTCTTCCTCT 729
||||| |||||||||| ||||||||| | | | ||||| |||| |||||||||||||||
Sbjct 1270 GAAGACTTTTTACTCTGTTTTGATTT-TACTGCTGAGAGATTTGGACCGCGTCTTCCTCT 1328
Query 730 GCCATTCCACTTTTATGTTTTA-GAAACCGTGTCTCTCTCTAGTGTTAGAGATGAGCAGC 788
|| || |||| |||| || | || || ||| |||| ||| |||||| ||| || ||||
Sbjct 1329 TCCTTTTCACTCTTAT-TTCGACGAGACTGTGACTCTATCTTGTGTTAAAGAAGATCAGC 1387
Query 789 T-TGCCGTGTTATATCAGCGCTTGGAT-TCATACGAGATCTTGGATATCTGGCTTACCAC 846
| | || | ||||| |||| ||||| | |||| |||||| |||| || ||| || ||||
Sbjct 1388 TCT-CCATCTTATACCAGCCCTTGG-TGCCATATGAGATCATGGAGATTTGGGTTTCCAC 1445
Query 847 TAAGATTGAGCCTAGTGCGGTTTCGTGGAGCATGTTTTTGAAACTGGATATGAGACCACT 906
||| |||||||| | ||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 1446 TAATATTGAGCCCAATGCTGTGTCGTGGAGCATGTTTTTGAAAGTGGATATGAGACCACT 1505
Query 907 CACTGGTTTTCAGTTT-ATGGTCGACGG-TGGAAGCTTCTTCATCGACGAGGAGAAGAAA 964
|||||||||||||||| | || | || ||| || |||||||| ||| ||||||| |||
Sbjct 1506 CACTGGTTTTCAGTTTGA-CGT-TATGGCTGGGAGTTTCTTCATTGACCAGGAGAACAAA 1563
Query 965 GTCGCTGTCGTTTTTGATC-TAACCAAACATAAACAGA-CCGTGACCCGTCGCTACCAAA 1022
||||| || |||||||||| | ||| | || ||| | |||||||||||||||||||||
Sbjct 1564 GTCGCCGTGGTTTTTGATCTTGACC-CATATCCACA-ATCCGTGACCCGTCGCTACCAAA 1621
Query 1023 CAGCTTACATCATTGGACAAGATGG---ATACTTCAAACCTGTT-AGCCTCGGAGAAGCT 1078
||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||
Sbjct 1622 CAGCTTACATCATTGGACAAGATGGTGGATACTTCAAATCTGTTGATA-TCGGAGAAGCT 1680
Query 1079 CC 1080
||
Sbjct 1681 CC 1682
> Ahg929120 jgi|Araly1|929120|scaffold_301577.1
Length=1237
Score = 311 bits (168), Expect = 8e-84
Identities = 837/1138 (74%), Gaps = 133/1138 (12%)
Strand=Plus/Plus
Query 19 AATGACGACGATTTCCGATTTTTCA-CCTTAATTGGTCG-GCGAGATACTGTCGAGGGTT 76
||||||||| || ||||| || || | | ||||| | | |||||||| || || |||
Sbjct 20 AATGACGACAATAGCCGATCTTCCAGGC-GATTTGGTAGAG-GAGATACTCTCTAGAGTT 77
Query 77 CCGA-TGACATCTTTGAAAGCAGTGCGGTGTACTTGCAAAAAGTGGAACGTTTTATCGAA 135
|| | |||||||||||| |||| || | |||||||||||||||||||| |||||||||
Sbjct 78 CC-ACTGACATCTTTGAGAGCAACACGATCTACTTGCAAAAAGTGGAACGCTTTATCGAA 136
Query 136 AGAT-AGGATTATT--T------G---C-GCAGCAAGGAAGGAGTTTCTAGGATTCATGA 182
| || | |||| || | | | |||||||||||| ||||| | || || ||||
Sbjct 137 AAATCA-GATTTTTGGTAGAAAAGCAACAGCAGCAAGGAAGCAGTTTATGGGGTTTATGA 195
Query 183 TGATGGATTCTAGAG-TCTGTTGGA-TGAAATTCGATCTCCAAGGGATCCGCAA-CAACA 239
||| |||||| || | | |||| | || |||||||||||||||| ||||| || || |
Sbjct 196 TGAAGGATTCAAG-GCTTTGTTCAATTG-AATTCGATCTCCAAGGAATCCGAAATGAAGA 253
Query 240 C--CTTGGTCGATAT-ATCCTTGTATAAGGCAAGTTGGTCA-ACTTGATC-AGATGGAGG 294
| | ||| | | |||| | ||||| |||||| || | |||| | | || | ||||
Sbjct 254 CGGCAACTTCG-T-TGATCCATCTATAAAGCAAGTAAGT-ATACTTAACCAAG-TCGAGG 309
Query 295 TATCTAAACTC-TTCACTGCGACGGCTTGTTGTTATGCGT-GGTGAAGGATAACTCGATG 352
||||||| || ||||||||||||| || ||| ||||||| || |||| || |||| |
Sbjct 310 TATCTAATGTCTTTCACTGCGACGGTTTATTGCTATGCGTCCTTG-AGGACAATTCGAGG 368
Query 353 CTCTTGGTGTGGAATCCCTATTTAGGTCAAACC--GTACGGATCCAACCGAGAAACAGTT 410
|||||||| |||||||| ||||| || |||||| || |||||||||| ||||||| ||
Sbjct 369 CTCTTGGTATGGAATCCGTATTTGGGGCAAACCAGGT--GGATCCAACCCAGAAACACTT 426
Query 411 TCCACAGATTAGACAGGTATGCTCTTGGTTACGACAAGAACCGTAACCACAAGATCCTGA 470
| | | | | ||| ||| | || || |||||||||||||||||||| ||| |||
Sbjct 427 T---C--A-T-G--AGGCATG-AC-AGG-TATGACAAGAACCGTAACCACAAAATCTTGA 474
Query 471 GGTTTGTGGATGATCACCTCGCTG-TCGGAGAACACGTTTTCGGGTAT-GAAATCTATGA 528
|| || | | | | | | || || || | || |||| ||| | |||||||| ||
Sbjct 475 GGATT-T---T-CT-A--T-G-TGATC---GACCGCG-TTTCTGGTTTCGAAATCTACGA 520
Query 529 TTTTAGCTCTAGCTCATGGAGGGTTC-TCGATGTCACTCCCGACTGGGATATACAGT-TT 586
||||||||||| ||||||| ||||| || |||||||||| |||||||| ||| | |
Sbjct 521 TTTTAGCTCTAATTCATGGAAGGTTCTTC-ATGTCACTCCTGACTGGGAAATA-A-TGCC 577
Query 587 TACCAAC-GCG-GG-GTATCTTTGAATGGAAATACCTACTTTTTC-GCTC--AAGAGAA- 639
| || | ||| || || |||||||| |||||||| ||| ||| | |||| |||||||
Sbjct 578 T-CC-TCGGCGTGGTGTGTCTTTGAAGGGAAATACTTAC-TTTCCTGCTCAAAAGAGAAC 634
Query 640 GAT--T-ACAG-AGG-ACGGAG-A-G-T-ATGAAGAGTTTGAAGATTTTTTACTCTATTT 690
|| | | ||| || || | | | || ||||| ||||||||||||| ||| ||
Sbjct 635 AATAGTGGGTGTAGGAAC-AAGAAGGATAATAAAGAG--TGAAGATTTTTTAGTCTGCTT 691
Query 691 TGATTTCT-CCACAGAGAGGTTTGAACCGCGTCTTCCTCTGCCATTCCACTTTTA-TGTT 748
|||||| | | | |||||| |||| ||||| ||| |||||||| || |||| ||| |
Sbjct 692 TGATTT-TACAAGAGAGAGATTTGGACCGCTTCTCCCTCTGCCGTTTCACTCTTACAATG 750
Query 749 TTAGA--AACCGTGTCTCTCTCTAGTGTTAGAGATGAGCAGCTTGCCGTGTTATATCAGC 806
||||| |||||||| ||| |||||||||| |||||||| || ||||||||||| |
Sbjct 751 TTAGACTTTTTGTGTCTCTATCTTGTGTTAGAGACGAGCAGCTCGCTGTGTTATATCAAC 810
Query 807 GCTTGGATTCATACGA---GATC-TTGGA-TATCTG-GCTTACCA-CTAAGATTGAGCCT 859
||||||| |||| || || | | || | | || | ||| || ||||||||| ||
Sbjct 811 GCTTGGACACATATGATGGGA-CAGTCGAGT-TTTGTG-TTA-CAGATAAGATTGATCCC 866
Query 860 AGTGCGGTTTCGTGGAGCATGTTTTTGAAACTGGATATGAGACCACTCACTGGTTTT-CA 918
| ||| || || ||||||||||||||||||| | || ||| ||||||| |
Sbjct 867 AATGCTGTGTCTTGGAGCATGTTTTTGAAAC-----A--AG-----TCATTGGTTTTACG 914
Query 919 GTTTATGGTCGACGGTGGAAGCTTCTTCATCGACGAGGAGAAGAAAGTCGCTGTCGTTTT 978
||| | | | | ||| || || ||||||||| | |||||||||||||| || |||||
Sbjct 915 GTTAAACCTTG-TGCTGGGAGTTTTTTCATCGACCAAGAGAAGAAAGTCGCCGTGGTTTT 973
Query 979 TGATCTA-ACCAAACATAAACA-GAC-CGTGACCCGTCGCTACCAAACAGCTTACATCAT 1035
||| || | | ||||| | | | | || ||||||| |||||||||||||||||
Sbjct 974 CGATATAGA-TGTATATAAAAAGGTCAAG-GA-ATGTCGCTATCAAACAGCTTACATCAT 1030
Query 1036 TGGACAAGATGGATACTTCAAACCTGTTAGCCTCGGAGAAGCTCCGTATCTCGG-AGA 1092
|||||||||||||||||||||| |||| | ||||| |||||| | ||||||| |||
Sbjct 1031 TGGACAAGATGGATACTTCAAATCTGTGAATATCGGACAAGCTCGGGATCTCGGGAGA 1088
> Ahg937320 jgi|Araly1|937320|scaffold_501511.1
Length=1211
Score = 263 bits (142), Expect = 2e-69
Identities = 385/494 (78%), Gaps = 49/494 (10%)
Strand=Plus/Plus
Query 1 TTGAAAGCTCGAAAGAATAATGACGACGATTTCCGATTTTTCAC-CTTAATTGGTCG-GC 58
||||||| | ||||| ||||||||| || || ||| | || | ||||||| | |
Sbjct 6 TTGAAAGTTTGAAAG---AATGACGACAATATCAGATCTGTC-CGAGGAATTGGTAGAG- 60
Query 59 GAGATACTGTCG-AGGGTTCCGATG--ACATCTTTGAAAGCAGTGCGGTGTACTTGCAAA 115
|||||||| | | |||||||| | | |||||| ||||||| | || | ||||||||||
Sbjct 61 GAGATACTCT-GTAGGGTTCC-A-GCAACATCTCTGAAAGCTTTACGATCTACTTGCAAA 117
Query 116 AAGTGGAACGTTTTATCGAAAGAT-AGGATTATTTGCGCAGCA-AG-GAAGGAGTTTCTA 172
|||||||||| |||||||||| || | |||| |||| | | | || ||| ||||| |
Sbjct 118 AAGTGGAACGCTTTATCGAAAAATCA-GATT-TTTG-GTAAAACAGAGAAACAGTTTTTG 174
Query 173 GGATTCATGATGATGGATTCTAGAGTCTGTTGGA-TGAAATTCGATCT-CCAAGGGATCC 230
||||||||||||||||||| |||||| |||| | |||||||| |||| |||| | |
Sbjct 175 GGATTCATGATGATGGATTATAGAGTTTGTT-CAGTGAAATTCAATCTCCCAA---A--C 228
Query 231 GCAACAAC-ACCTTGGTCGATATATCCTTGTATAAGGCAAGTTGGTCAACTTGATC-AGA 288
| || || | | || || | | || | ||||| ||| || | | |||||||| ||
Sbjct 229 G-AA-GACTA-C--GG-CG-CAGACCCATCTATAAAGCAGGTAGCTTTACTTGATCAAG- 280
Query 289 TGGAGGTATCTAAACTC-TTCACTGCGACGGCTTGTTGTTATGCGTGGTGAAGGATAACT 347
|| || ||| ||||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 281 TGAAGATATGTAAACTCTTTCACTGCGACGGCTTGTTGTTATGCGTCGTGAAGGACAACA 340
Query 348 CGATG-CTCT-TGGTGTGGAATCCC-TATTTAGGTCAAACC--GTACGGATCCAACCGAG 402
| | | || | |||| ||||| ||| ||||| ||||||||| || |||||||||| ||
Sbjct 341 C-AGGGCT-TGTGGTATGGAA-CCCGTATTTGGGTCAAACCAAGT--GGATCCAACCCAG 395
Query 403 AAACAGTTTCCACAGATTAGACAGGTATGCTCTTGGTTACGACAAGAACCGTAACCACAA 462
|| |||||||| ||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 396 AACCAGTTTCCTCAGCTCAGACAGGTATGCTCTTGGTTATGACAAGAACCGTAACCACAA 455
Query 463 GATCCTGAGG-TTT 475
||| ||||| |||
Sbjct 456 GATTTTGAGGATTT 469
> Ahg946515 jgi|Araly1|946515|scaffold_702744.1
Length=467
Score = 220 bits (119), Expect = 1e-56
Identities = 268/338 (79%), Gaps = 17/338 (5%)
Strand=Plus/Plus
Query 157 AAGGAAGGAGTTTC-TAGGATTCATGATGATGGATTCTAGAGTCTGTTGGATGAAATTCG 215
||||||| || ||| | ||||||||||||||||||||||| || |||| ||||| || |
Sbjct 14 AAGGAAGCAG-TTCATGGGATTCATGATGATGGATTCTAGGGTTTGTTCAATGAATTTTG 72
Query 216 ATCTCCAAGGGATCCGCAACAAC-ACCTTGGTCGAT-AT-ATCCTTGTATAAGGCAAGTT 272
|||||||||| |||| |||||| | | | | | |||| ||||||| |||| ||
Sbjct 73 ATCTCCAAGGAATCCATAACAACGA-AGAAGACTTTGTTGATCCATGTATAAAGCAAATT 131
Query 273 GGTCAACTTGATCAGATGGAGGTATCTAAACT-CTTCACTGCGACGGCTTGTTGTTATGC 331
| | |||||||||| || ||| |||||||| | ||||| ||||| || || |||||||||
Sbjct 132 GCTAAACTTGATCAAATCGAGATATCTAAAGTCCTTCAATGCGATGGTTTCTTGTTATGC 191
Query 332 GTGGTGAAGGATAACTCGATGCTCTTGGTGTGGAATCCCTATTTAGGTCAAACCGTACGG 391
|| | ||||| ||||||| ||| || ||||||||||| |||||||| |||| | | ||
Sbjct 192 GTCATTAAGGACAACTCGAGGCTTTTAGTGTGGAATCCTTATTTAGGGCAAA-C--AAGG 248
Query 392 ---ATCCAACCGAGAAACAGTTTCCACAGATTAGACAGGTATGCTCTTGGTTACGACAAG 448
||| |||| ||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 249 TTTATCAAACCAAGAAACAGTTTCCACAGATTAGACAGGTATGCTCTCGGATACGACA-G 307
Query 449 -AACCGTAACCACAAGATCCTGAGG-TTTGTGGATGAT 484
|||| ||| |||| ||| ||| ||| ||||||||
Sbjct 308 TAACCACAACTACAAAATCTTGACTCTTT-TGGATGAT 344
> Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1
Length=3192
Score = 117 bits (63), Expect = 2e-25
Identities = 131/162 (81%), Gaps = 11/162 (7%)
Strand=Plus/Plus
Query 291 GAGGTATCTAAACTCT-TCACTGCGACGGCTTGTTGTTATGCGTGG-TGAAGGATAACTC 348
||| |||||||| | | ||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 2230 GAGATATCTAAAGTGTATCACTGCGACGGCTTGTTGTTATGCGTGGCT-AAGGACAACTC 2288
Query 349 GATGCTCTTGGTGTGGAATCCCT-ATTTAGGTCAAACC-GTACGGATCCA-ACCGAGAAA 405
|| | || |||| ||||| |||| |||| || ||||| | | ||||| | ||| ||||
Sbjct 2289 GAGGGTCGTGGTTTGGAA-CCCTTATTTGGGGCAAACAAG-ATGGATC-AGACCCAGAA- 2344
Query 406 CAGTTTCCA-CAGATTAGACAGGTATGCTCTTGGTTACGACA 446
||| |||| || | |||||| ||||||||||| |||||||
Sbjct 2345 CAGAATCCAACATAGGAGACAGCTATGCTCTTGGATACGACA 2386
> Ahg929149 jgi|Araly1|929149|scaffold_301606.1
Length=1237
Score = 111 bits (60), Expect = 9e-24
Identities = 222/295 (75%), Gaps = 31/295 (11%)
Strand=Plus/Plus
Query 767 TCTAGTGTTAGAGATGAGCAGCTTGCCGTGTTATATCAGCGCTTGGATTCATACGAGATC 826
||| ||||||||||||||||||||||||||||| |||| | | | | || ||| |
Sbjct 840 TCTTGTGTTAGAGATGAGCAGCTTGCCGTGTTACATCAAAG-T-G-A--CA--CGACAA- 891
Query 827 TTGGATATCTGGCTTACCACTAAGATTGAGCCTAGTGCGGTTTCGTGGAGC-ATGTTTTT 885
| || ||| ||| || ||||| |||| ||||| | |||||| |||||||| | ||||||
Sbjct 892 TAGG-TATTTGGATTTCCACTGAGATCGAGCCCAATGCGGTGTCGTGGAGAGA-GTTTTT 949
Query 886 GAAACTGGA-TATGA-GACCACTCACTGGTTTTCAGTTTATGG-T-CGACGGTGGAAGCT 941
| || |||| | ||| ||| | | |||||||| | ||| | | | | ||| ||||
Sbjct 950 GGAAGTGGACT-TGACGACGGTTGA-TGGTTTTCCGG--ATGACTTCAAAGCTGGGAGCT 1005
Query 942 TCTTCATCGACGAGGAGAAGAAAGTCGCTGTCGTTTTTGATCTAACCAAACATAAACAGA 1001
||||| | |||||||||||| ||||||| || |||||||||| || | || | ||
Sbjct 1006 TCTTCGTTGACGAGGAGAAGCAAGTCGCCGTAGTTTTTGATC-AAG-AGAC-----C-GA 1057
Query 1002 CCGTGACCCGTCGCTACCAAACAGCTTACATCATTGGACAAGATGGATACTTCAA 1056
| | || || || |||| ||||||| |||||||||| ||||||||||||||||
Sbjct 1058 --G-G-CCGGTGGCAACCACACAGCTTGCATCATTGGAAAAGATGGATACTTCAA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5