BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15940.1
Length=2565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929405 jgi|Araly1|929405|scaffold_301862.1 3262 0.0
Ahg474368 jgi|Araly1|474368|fgenesh2_kg.1__4322__AT1G52420.1 1101 0.0
> Ahg929405 jgi|Araly1|929405|scaffold_301862.1
Length=2131
Score = 3262 bits (1766), Expect = 0.0
Identities = 2022/2144 (94%), Gaps = 24/2144 (1%)
Strand=Plus/Plus
Query 336 ATTGTAGTAAAG---AAAGTATGGAAGATCTTCGGCTATCACCGCTGAAATTAGGTAGCT 392
|||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1 ATTGTAGTAAAGAAAAAACTATGGAAGATCTTCGGCTATCACCGTTGAAACTAGGTAGCT 60
Query 393 TTAAGTCTTCATTGTCAGGGAGGTCTACTCCAAGGGGTTCACCTACACT-TCGGAAAGTG 451
||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||
Sbjct 61 TTAAGTCTTCATTGTCAGGGAGGTCTACTCCAAGGGGTTCACCTACA-TCTAGGAGAGTG 119
Query 452 CATTCAGGCAGGACTCCACGTAGAGAGGGTAAAGGTAGTGGTGGAGCTGTTCAATGGTTC 511
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 120 CATTCAGGCAGGACTCCACGTAGAGAGGGCAAAGGTAGTGGTGGAGCTGTTCAGTGGTTC 179
Query 512 AGAAGTAACCGGCTGCTATATTGGTTACTCTTGATTACTCTTTGGACATATCTTGGATTC 571
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 180 AGAAGTAACCGGCTGCTATATTGGTTACTGTTGATTACCCTTTGGACATATCTTGGATTT 239
Query 572 TATGTTCAGTCAAGATGGGCACATGATGATGATAACAAAGTTGAGTTCTTGCGGTTTGGA 631
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 240 TATGTTCAGTCCAGATGGGCACATGATGATGATAATAAAGTTGAGTTCTTACGGTTTGGA 299
Query 632 GGCAAACTCAGAGAAGATGTTTTGCATGTCGAGCAGAATAAACGACGGGATTTAGTTGCT 691
|||||||| |||||||||||||||||||| |||||||||||||||| |||| |||||||
Sbjct 300 GGCAAACTGAGAGAAGATGTTTTGCATGTGGAGCAGAATAAACGACTTGATTCAGTTGCT 359
Query 692 GATGAGAGTTCTCATGCTGTAGTAGATCA-TACCAATATAGTCCATCTAGGTGTAAATAA 750
|||||| |||||||||| |||||||| | |||||||||||||| | |||||||||||||
Sbjct 360 AATGAGAATTCTCATGCTCTAGTAGAT-ACTACCAATATAGTCCGTATAGGTGTAAATAA 418
Query 751 AAGGATGCATGTAACTTTGGCCAAGAAAGAGGATAG-CACATCTCGGCGAAGCGTGAGCC 809
||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct 419 GAGGATGCATGTAACTTTGGCCAAGAAAGAGGAT-GACACATCTCAAAGAAGCTTGAGCT 477
Query 810 CCAGGAGGAGGACCAGAAAAGCTAGTCGTAGTTCACGTACTAGGATTCGTAGTACGCAGA 869
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 478 CCAGGAGGAGGACCAGAAAAGCTAGTCGTAGTTCACGTACTAGGATTCATAGTAAGCAGA 537
Query 870 AGGTGAGAAAAGTGATGGAGACGAAGGAATTGGATGAGCAAGACCAGGAACTTCCAAACA 929
|||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||||
Sbjct 538 AGGTGAGAAAAGTGATGGAGACTAAGGACTTGGATGAGCAAGGTCAAGAACTTCCAAACA 597
Query 930 TAAATGTTACCTACGGTAA-ACTTTTTGGTCCTTTTGGATCATTGGAGGATAGAATTCTT 988
|||||||||||||||||| | |||||||||||||||||||| ||||||||||| |||||
Sbjct 598 CAAATGTTACCTACGGTAAGA-TTTTTGGTCCTTTTGGATCACTGGAGGATAGAGTTCTT 656
Query 989 GAATGGAGTCCGCAAAAGCGATCAGGGACCTGTGACAGGAAATCAGACTTCAAACGTCTT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAATGGAGTCCGCAAAAGCGATCAGGGACCTGTGACAGGAAATCAGACTTCAAACGTCTT 716
Query 1049 GTTTGGTCTAGGAGATTCGTCCTACTTTTCCATGAACTATCAATGACTGGTGCTCCAATT 1108
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 717 GTTTGGTCTAGAAGATTCGTCCTACTTTTCCATGAACTATCGATGACTGGTGCTCCAATT 776
Query 1109 TCAATGATGGAGTTGGCTTCCGAGCTTTTGAGCTGTGGTGCAACAGTATATGCTGTAGTT 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 777 TCAATGATGGAGTTGGCTTCCGAGCTTTTGAGCTGTGGTGCAACAGTATATGCAGTAGTC 836
Query 1169 CTGAGCAGAAGGGGTGGATTATTGCAAGAGCTCACAAGGAGAAGGATCAAAGTGGTTGAA 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTGAGCAGAAGGGGTGGATTATTGCAAGAGCTCACAAGGAGAAGGATCAAAGTGGTTGAA 896
Query 1229 GATAAAGGAGAACTCAGCTTCAAAACTGCCATGAAAGCAGATCTTGTCATTGCAGGATCA 1288
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GACAAAGGAGAACTCAGCTTCAAAACTGCCATGAAAGCAGATCTTGTCATTGCAGGATCA 956
Query 1289 GCCGTCTGTGCTTCATGGATAGATCAATACATGGATCACCATCCAGCTGGTGGAAGTCAA 1348
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GCAGTGTGTGCTTCATGGATAGATCAATACATGGATCACCATCCAGCTGGTGGAAGTCAA 1016
Query 1349 ATCGCTTGGTGGGTGATGGAGAACCGGCGAGAGTACTTTGATCGAGCGAAACCTGTGCTT 1408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1017 ATCGCTTGGTGGGTGATGGAGAACCGGCGAGAGTACTTTGATCGAGCGAAACCTGTACTT 1076
Query 1409 GACCGAGTGAAATTGCTGATTTTTCTATCTGAAGTACAGAGCAAACAATGGTTAACATGG 1468
|||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1077 GACCGAGTGAAACTGCTAATTTTTCTATCTGAAGTTCAGAGCAAACAATGGATAACATGG 1136
Query 1469 TGTGAAGAGGACCATGTAAAGCTTAGGTCTCAGCCAGTTATTGTTCCGCTGTCTGTTAAT 1528
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1137 TGTGAAGAGGACCATATAAAGCTTAGGTCTCAGCCGGTTATTGTTCCGCTGTCCGTTAAT 1196
Query 1529 GATGAGTTAGCTTTTGTTGCTGGGGTATCCTCTTCACTAAATACTCCAACACTGACCCAG 1588
|||||||||||||||||||||||| | | |||||||||||||||||| ||||| |||||
Sbjct 1197 GATGAGTTAGCTTTTGTTGCTGGGATTTACTCTTCACTAAATACTCCGACACTAACCCAA 1256
Query 1589 GAGACT-ATGAAGGAGAAAAGACAAAAGCTACGTGAATCAGTCAGAACGGAGTTCGGTTT 1647
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 GAGA-TGATGAAGGAGAAAAGACAAAAGCTTCGTGAATCAGTCAGAACGGAGTTCGGTTT 1315
Query 1648 GACTGATAAGGATATGCTTGTGATGTCTCTTAGCAGCATAAACCCGGGAAAGGGACAACT 1707
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1316 GACAGATAAGGATATGCTTGTGATGTCTCTTAGCAGCATAAATCCAGGAAAGGGACAACT 1375
Query 1708 TCTTCTACTTGAATCTGTCGCCTTGGCACTGGAGAGAGAACAA-ACACAAGAGCAAGTAG 1766
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1376 TCTTCTCCTTGAATCTGTCGCCTTGGCACTGGAGAGAGAACAAGA-ACAAGAGCAAGTAG 1434
Query 1767 CTAAACGTAATCAGT--CCAAAATAATCAAGAACCTCAATGGCATCAGGAAAGAAAAGAT 1824
||||| |||||||| || ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1435 CTAAAAGTAATCAGCAGCCCAAA-A-TCAAGAACCTCAATGGCATCAGGAAAGAAAAGAT 1492
Query 1825 TAGTCTTTCTGCCAGACATCGTTTAAGAGGTTCATCACGGAAGATGAAAATTACGTCTCC 1884
||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1493 TAGTCTTTCTGTAAAACATCGTTTAAGAGGTTCATCACGGAAGATGAAAATCACGTCTCC 1552
Query 1885 TGCTGTTGACAATCATCCATCAGTTCTCTCTGCCACCGGTAGAAGAAAGCTGCTGTTGTC 1944
||| ||||||| || ||||||||| ||||||||||||| |||||||||| |||| ||
Sbjct 1553 CGCTACTGACAAT--TC-ATCAGTTCTTTCTGCCACCGGTAAAAGAAAGCTGTTGTTTTC 1609
Query 1945 TGGCAACGTAACACAGAAACAAGACCTTAAACTTCTTCTTGGATCAGTTGGGTCCAAGAG 2004
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TGGAAACGTAACACAGAAACAAGACCTTAAACTTCTTCTTGGATCAGTTGGGTCCAAGAG 1669
Query 2005 CAACAAAGTAGCATACGTTAAGGAGATGTTGAGCTTCTTGTCAAACAATGGAAACTTATC 2064
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1670 CAACAAAGTTGCATACGTTAAGGAAATGTTGAGCTTCTTGTCAAACAATGGAAACTTATC 1729
Query 2065 GAACTCGGTTCTGTGGACTCCAGCGACCACTCGTGTTGCCTCATTATACTCCGCAGCAGA 2124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1730 GAACTCGGTTCTGTGGACTCCAGCGACCACTCGTGTTGCCTCATTATACTCTGCAGCAGA 1789
Query 2125 TGTCTACGTAACAAACTCCCAGGGAGTTGGTGAAACATTCGGGAGAGTGACTATCGAAGC 2184
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1790 TGTCTACGTCACAAACTCCCAGGGAATTGGTGAAACATTCGGGAGAGTGACTATCGAAGC 1849
Query 2185 AATGGCTTATGGTCTTCCGGTGCTTGGAACAGATGCTGGAGGAACAAAAGAGATAGTGGA 2244
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1850 AATGGCTTATGGTCTTCCGGTACTTGGAACAGACGCTGGAGGAACAAAAGAGATAGTGGA 1909
Query 2245 GCACAATGTTACAGGGCTACTTCATCCTGTGGGGAGGGCAGGTAACAAAGTTTTGGCACA 2304
||||||||| |||||||||||||| |||||||||||||||||||||||| |||| || ||
Sbjct 1910 GCACAATGTCACAGGGCTACTTCACCCTGTGGGGAGGGCAGGTAACAAATTTTTAGCTCA 1969
Query 2305 GAATCTTTTGTTTCTTCTTAGAAACCCATCTACAAGGCTACAACTAGGTAGCCAAGGACG 2364
|||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1970 GAATCTCTTGTTTCTTCTTAGAAACCCGTCTACAAGGTTACAACTAGGTAGCCAAGGACG 2029
Query 2365 TGAAATCGTTGAGAAGATGTACATGAAGCAGCACATGTACAAGAGATTTGTGGATGTTCT 2424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2030 TGAAATCGTTGAGAAGATGTACATGAAGCAGCACACGTACAAGAGATTTGTGGATGTTCT 2089
Query 2425 AGTCAAATGTATGAGACCCTAACTGTGTGTGTACTTCCATCGTT 2468
|||||||||||||||||||||| | |||||||||| |||||||
Sbjct 2090 AGTCAAATGTATGAGACCCTAA--GAGTGTGTACTTTCATCGTT 2131
> Ahg474368 jgi|Araly1|474368|fgenesh2_kg.1__4322__AT1G52420.1
Length=2529
Score = 1101 bits (596), Expect = 0.0
Identities = 1156/1417 (82%), Gaps = 76/1417 (5%)
Strand=Plus/Plus
Query 353 ATGGAAGATCTTCGGCTATCACCGCTGAAATTAG-GTAGCT-TTAAGTCTTCATTGTCAG 410
||||| || ||||| |||| ||||||| | || || | ||||||||||| ||||||
Sbjct 326 ATGGAGGAGATTCGGTTATCGCCGCTGAGA-CAGACAAG-TGTTAAGTCTTCACTGTCAG 383
Query 411 GGAGGTCTACTCCAAGGGGTTCACCTACACTTCGGAAAGTGCATTCAGGCAGGACTCCAC 470
||||||||||||||||||| | | | || | | | | ||||||| || |||||||| |
Sbjct 384 GGAGGTCTACTCCAAGGGG-T-A-C-AC-C-T---AGATTGCATTCTGGTAGGACTCCTC 434
Query 471 GTAGAGAGGGTAAAGGTAGTGGTGGAGC-TGTTCA-ATGGTTCAGAAGTAACCGGCTGCT 528
|| ||| ||| | | | | || ||||| | |||| || ||| | |||| |||| || |
Sbjct 435 GT--AGA-GGTCATGTTGGAGGAGGAGCAT-TTCAGTTGTTTC-GTAGTAGCCGGTTGGT 489
Query 529 ATATTGGTTACTCTTGATTACTCTTTGGACATATCTTGGATTCTATGTTCAGTCAAGATG 588
|||||| | || ||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 490 TTATTGGCTGCTTTTGATTACTCTTTGGACGTATCTTGGATTTTATGTTCAGTCTAGGTG 549
Query 589 GGCACATGATGATGATAA-CAAAGTTGAGTTCTTGCGGTTTGGAGGCAAACTCAGAG-AA 646
|||||||||| |||| || ||||||||||| || ||||||||||||| || | ||| ||
Sbjct 550 GGCACATGATAATGA-AAGTAAAGTTGAGTTTTTACGGTTTGGAGGCAGAC-C-GAGAAA 606
Query 647 -GATGTTTTGCATGTCGAGCAGAAT-AAACGACGGGAT-TTAGTTGCTGATGAGAGTTCT 703
|||||||| |||| ||| || || ||| || |||| | |||||| |||||| ||||
Sbjct 607 GGATGTTTTATATGTGGAGAAG-ATCAAAGGAATGGATGCT-GTTGCTAATGAGAATTCT 664
Query 704 CATGCTGTAGTAGATCA-TACCAATATAG-TCCAT-CTAGGTGTAAATAAAAGGATGCAT 760
| ||| | ||| || | ||| || || | || || ||| | | ||| |||| | ||
Sbjct 665 GAGGCTTTGGTAAAT-ATTACTGGTAAAGAT-GATGCT-GGTCTGAGTAAGAGGACGGAT 721
Query 761 GTAACTTTGGCCAAGAAAGAGGATAGCACATCTCGGCGAAGCGTGAG-CCCCAGGAGGAG 819
|| | | | ||||||||| ||| | | ||||| || ||| |||| || || | ||
Sbjct 722 GTTAGTCTAATCAAGAAAGATGATGGGGCTTCTCGACGGAGCTTGAGTTCCAAGCA-GAA 780
Query 820 GACCAGAAAAGCTAGT-CGTAGTTCACGTACT-AGGATTCGTAGTACGCAGAAGGTGA-G 876
||| |||||| || || || |||||||||| | ||| | ||| ||| |||||||||||
Sbjct 781 GACTAGAAAAACT-GTCCGGAGTTCACGTAGTAAGG-TACGTGGTAAGCAGAAGGTGATT 838
Query 877 AAA-A-GTGA-TGGAGACGAAGGAATTGGA---TGAGCAAGA-CCAGGAACTTCCAAACA 929
||| | || | | ||||| ||||| ||||| ||||||||| ||| |||||||| |
Sbjct 839 AAAGAGGT-ACTTGAGACTAAGGATTTGGATGCTGAGCAAGATCCA-CAACTTCCATTGA 896
Query 930 TAAATGTTACCTACGGTAAACTTTTTGGTCCTTTTGGATCATTGGAGGATAGAA-TTCTT 988
||||| ||| || ||||| ||| ||||||||||||||||| | ||||||| || |||||
Sbjct 897 CAAATGCTACTTATGGTAAGCTTCTTGGTCCTTTTGGATCACTAGAGGATA-AAGTTCTT 955
Query 989 GAATGGAGTCCGCA-AAAG-CGATCAGGGACCTGTGACAGGAAATCAGACTTCAAACGTC 1046
|||||||| || || | || ||||| ||||| |||||| |||||||||| || ||||| |
Sbjct 956 GAATGGAG-CC-CACATAGACGATCTGGGACTTGTGACCGGAAATCAGATTTTAAACGCC 1013
Query 1047 TTGTTTGGTCTAGGAGATTCGTCCTACTTTTCCATGAACTATCAATGACTGGTGCTCCAA 1106
|||||||||| |||||||||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 1014 TTGTTTGGTCGAGGAGATTCGTCCTGCTTTTCCATGAGCTATCAATGACAGGCGCTCCAA 1073
Query 1107 TTTCAATGATGGAGTTGGCTTCCGAGCTTTTGAGCTGTGGTGCAACAGTATATGCTGTAG 1166
|||||||||||||| ||||||| |||||||||||||||||||||||||| | ||| ||||
Sbjct 1074 TTTCAATGATGGAGCTGGCTTCGGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAGTAG 1133
Query 1167 TTCTGAGCAGAAGGGGTGGATT-ATTGCAAGAGCTCACAAGGAGAAGGATCAAAGTGGTT 1225
|||| ||||| || |||||||| | ||||||||||||| ||||||||||||||||| |||
Sbjct 1134 TTCTCAGCAGGAGAGGTGGATTGA-TGCAAGAGCTCACTAGGAGAAGGATCAAAGTTGTT 1192
Query 1226 GAAGATAAAGGAGAACTCAGCTTCAAAACTGCCATGAAAGCAGATCTT-GTCATTGCAGG 1284
||||| |||||||||||||||||||| ||| |||||||||||||| || ||||| |||||
Sbjct 1193 GAAGACAAAGGAGAACTCAGCTTCAAGACTTCCATGAAAGCAGAT-TTGGTCATCGCAGG 1251
Query 1285 ATCAGCCGTCTGTGCTTCATGGATAGATCAATACATGGATCACCATCCAGCTGGTGGAAG 1344
|||||| || ||| | ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1252 ATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAAG 1311
Query 1345 TCAAATCGCTTGGTGGGTGATGGAGAACCGGCGAGAGTACTTTGATCGAGCGAAACCTGT 1404
|||||||||||||||| | |||||||| || ||||| |||||||||||||||||||| ||
Sbjct 1312 TCAAATCGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAGT 1371
Query 1405 GCTTGACCGA-GTGAAATTGCTGATTTTTC-TATCTGAAGT-ACAGAGCAAACAATGGTT 1461
||||||| | |||||| |||||| ||||| |||||||| | |||||||| |||||||||
Sbjct 1372 TCTTGACC-ATGTGAAAATGCTGA-TTTTCTTATCTGAA-TCACAGAGCAGACAATGGTT 1428
Query 1462 AACATGGTGTGAAGAGGACCATGTAAAGCTTAGGTCTCAGCCAGTTATTGTTCCGCTGTC 1521
||||||||| || ||||| ||| |||||||||| || || ||||| |||||||| || ||
Sbjct 1429 AACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATC 1488
Query 1522 TGTTAATGATGAGTTAGCTTTTGTTGCTGGGGTATCC-TCTTCACTAAATACTCCAACAC 1580
|||||||||||||||||||||||| |||||| | ||| |||||||| || || |||||||
Sbjct 1489 TGTTAATGATGAGTTAGCTTTTGTAGCTGGGAT-TCCTTCTTCACTCAACACACCAACAC 1547
Query 1581 TGAC-CCAGGAGACTATGAAGGAGAAAAGACAAA-AGCTACGTGAATCAGTCAGAACGGA 1638
| | ||| |||| |||| |||||| ||||||| | |||| |||||||| |||| |||
Sbjct 1548 TTTCACCA-GAGAAAATGAGGGAGAAGAGACAAATA-TTACGCGAATCAGTGAGAATGGA 1605
Query 1639 GTTCGGTTTGACTGAT-AAGGATATGCTTGTGATGTCTCTTAGCAGCATAAACCCGGGAA 1697
||| || || || ||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1606 GTTAGGATTAACAGATGCA-GATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAA 1664
Query 1698 AGGGACAACTTCTTCTACTTGAATCTGTCGCCTTGGC 1734
|||| ||||||||||| ||||||||| ||| ||||||
Sbjct 1665 AGGGGCAACTTCTTCTCCTTGAATCTATCGTCTTGGC 1701
Score = 414 bits (224), Expect = 1e-114
Identities = 406/494 (82%), Gaps = 12/494 (2%)
Strand=Plus/Plus
Query 1959 AGAAACAAGACCTTAAACTTCTTCTT-GGATCAGTTGGG-TCCAAGAGCAACAAAGTAGC 2016
|||| ||||| |||||| ||||| || ||||||| |||| || |||||||||||||| |
Sbjct 1851 AGAAGCAAGAACTTAAAGTTCTT-TTAGGATCAG-TGGGTTCAAAGAGCAACAAAGTTGG 1908
Query 2017 ATACGTTAAGGAGATGTTGAGCTTCTTGTCAAACAATGGAAACTTATCGAACTCGGTTCT 2076
||| ||||| |||||||| |||||||| ||||| || ||||||||||| || || || |
Sbjct 1909 ATATGTTAAAGAGATGTTAAGCTTCTTATCAAAAAACGGAAACTTATCTAAGTCAGTAAT 1968
Query 2077 GTGGACTCCAGCGACCACTCGTGTTGCCTCATTATACTCCGCAGCAGATGTCTACGTAAC 2136
||||||||| || || ||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1969 GTGGACTCCCGCAACAACTCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTAC 2028
Query 2137 AAACTCCCAGGGAGTTGGTGAAACATTCGGGAGAGTGACTATCGAAGCAATGGCTTATGG 2196
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 2029 AAACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGG 2088
Query 2197 TCTTCCGGT-GCTTGGAACAGATGCTGGAGGAACAAAAGAGATAGTGGAGCACAATGTTA 2255
||| | || | | |||||||| || |||||||| |||||||| || | ||||| || |
Sbjct 2089 ACTTGCAGTAG-TGGGAACAGACGCAGGAGGAACCAAAGAGATGGTTCAACACAACGTGA 2147
Query 2256 CAGGGCTACTTCA-TCCTGTGGGGAGGG-CAGGTAACAAAGTTTTGGCACAGAATCTTTT 2313
| || |||||||| || |||| | | | |||||||||| || || || ||||| ||
Sbjct 2148 CTGGTCTACTTCACTCAA-TGGG-ACGATCCGGTAACAAAGAATTAGCTCATAATCTCTT 2205
Query 2314 GTTTCTTCTTAGAAACCCAT-CTACAAGGCTACAACTAGGTAGCCAAGGACGTGAAATCG 2372
|| ||| ||||| || || | | ||||||| | | || || ||||||| |||| |
Sbjct 2206 GTATCTACTTAGGAATGCAGACG-CGAGGCTACGATTGGGAAGTGAAGGACGCAAAATGG 2264
Query 2373 TTGAGAAGATGTACATGAAGCAGCACATGTACAAGAGATTTGTGGATGTTCTAGTCAAAT 2432
||||||| |||||||||||||| || ||||||||| |||| || ||||||||||||||||
Sbjct 2265 TTGAGAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTAGTCAAAT 2324
Query 2433 GTATGAGACCCTAA 2446
|||||||||| |||
Sbjct 2325 GTATGAGACCATAA 2338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96711132055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5