BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15950.1
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904533 jgi|Araly1|904533|Al_scaffold_0003_1661 3615 0.0
Ahg474366 jgi|Araly1|474366|fgenesh2_kg.1__4320__AT1G52410.1 211 2e-53
> Ahg904533 jgi|Araly1|904533|Al_scaffold_0003_1661
Length=2322
Score = 3615 bits (1957), Expect = 0.0
Identities = 2218/2339 (95%), Gaps = 37/2339 (2%)
Strand=Plus/Plus
Query 43 ATGGGAACAAAGTTTTTAGCTCTGGGTTTGTCTCTGTGTCTTGTTCTCTCAAGCTTCTAT 102
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACGAAGTTCTTAGCTCTGGTTTTGTCTCTGTGTCTTGTTCTCTCAAGCTTCTA- 59
Query 103 C-AAGTTTCTTGCCAGGATGAAGGAACTGGAAGTTTGAGTACTTTAGATCTAATTGAGCA 161
| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 60 CGAAGTTTCTTGCCAGGATGAAGGAAGTGGAAGTTTGAGTACTTTAGATCTAATCGAGCA 119
Query 162 TGAATATCAAACTAGTGTCAATTCTCTCCAAGGCAATGAAGCAGTAGATCAAACTGAGAC 221
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 120 TGAATATCAAACTAGTGTCAATTCTCTCCAAGGCAATG-A--AGTAGATCAAACTGAGAC 176
Query 222 CAGTGGTCAGAAAAACAGTACAGTGTCTGATAACAACACTATTTCTTTGTCTCTATCTGA 281
|||||||||||||||||||||| | |||||||||||||||||||||| |||||||
Sbjct 177 CAGTGGTCAGAAAAACAGTACA-----AG-TAACAACACTATTTCTTTGTCTTTATCTGA 230
Query 282 AGAACCTGCATTGGAAACTCTTAAAGAATCTGTTGATACATCAGCTGAGTTAGGAGCTGT 341
|||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 AGAA-C--CAGTGGAAACTCTTAAAGAATCTGTTGATACATCAGCTGAGTTAGGAGCTGT 287
Query 342 TACTGATGAAGTCGATAAACCTTCAAGTATGTTGGACCATATTGAACTTGAGTTCGAAGC 401
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 288 TACTGATGAAGCCGATAAACCTTCGAGTATGTTGGACCATATCGAACTTGAGTTCGAAGC 347
Query 402 ACATATCAATGAACTTAAAGAAGCTGGATCTGATGGTATCAACAAAGTTGAGGAATCTAA 461
|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 348 ACATGTCAATGAACTTAAAGAAGCTGGATCTGATGGTATCAACAAAGTTGATGAGTCTAA 407
Query 462 AGATGATGAAGAAGCTGCAAGGAGACATAAAATGTTGGAAGCCATTGAACGTGAATTTGA 521
||||||||||||||||| |||||||| |||||||||||||||||||| || || |||||
Sbjct 408 GGATGATGAAGAAGCTGCTAGGAGACAGAAAATGTTGGAAGCCATTGAGCGAGAGTTTGA 467
Query 522 AGCTGCTCATGCTGGATTTGAACAACTAAAGACTGATGATTCCGCCCAAGGATTAGATGA 581
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 468 AGCTGCTCATGCTGGATTTGAACAACTAAAGATTGATGATTCCACCCAAGGATTAGATGA 527
Query 582 TGAACAATCTGCAAAGAGACAAAGCATGTTGGACGAGATTGAACGTGATTTTGAAGCTGC 641
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 528 TGAACAATCTGCAAAGAGACAAAGCATGTTGGATGAGATTGAACGTGACTTTGAAGCTGC 587
Query 642 TACAAAAGGTCTTGAGCAACTAAAGGCTGATGATTTAACTGGAATCAACGATGAAGAACA 701
||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct 588 TACAAAAGGTCTTGAACAACTAAAGGCTGATGATATAACCGGAGTCAACGATGAAGAACA 647
Query 702 CGCTGCAAAGAGACAAAAGATGCTTGAAGAGATCGAAAGAGAGTTTGAAGAAGCTACAAA 761
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 648 CGCTGCAAAGAGACAAAAGATGCTGGAAGAGATCGAAAGAGAGTTTGAAGAAGCTACAAA 707
Query 762 AGGTCTTGAAGAACTAAGGCATTCTACCTCAAGCACAGATGATGAAGCACAATCTGCAAA 821
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 708 AGGTCTTGAAGAACTAAGGCATTCTACCTCAAGCACAGATGATGAAGCACACTCTGCAAA 767
Query 822 GAGACAGAATATGCTAGATGAGATCGAACGGGAGTTTGAAGCTGCTACAAGTGGTCTTAA 881
|||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 768 GAGACAGAGTATGTTAGATGAGATTGAACGCGAGTTTGAAGCTGCTACAAGTGGTCTTAA 827
Query 882 AGAGCTAAAGATTAATGCTCACACTGTCAAAGATGA-T-GT-T--GAT-GATA-A----A 930
||||||||||||||||||| |||| |||||||||| | | | ||| | || | |
Sbjct 828 AGAGCTAAAGATTAATGCTTTCACTATCAAAGATGATTCTTCTGAGATAGCTAGATGTTA 887
Query 931 -G--AAC---A-AGATGCCAAAAGACAAAGTATGCTAGATGCAATTGAACGTGAGTTTGA 983
| | | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 888 TGCCTTCTTTACAGATGCCAAAAGACAAAGTATGCTAGATGCAATTGAACGCGAGTTTGA 947
Query 984 AGCCGTTACCGAGAGTTTTAAACAACTTGAAGATATCGCCGATAACAAAGCTGAAGGAGA 1043
||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 948 AGCCGTTACTGAGAGTTTTAAATAACTTGAAGATATCGCCGATAACAAAGATGAAGGAGA 1007
Query 1044 CGACGAATCTGCAAAGAGGCAAAGTATGTTGGATGAGATTGAACGTGAATTTGAAGCTGC 1103
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CGACCAATCTGCAAAGAGGCAAAGTATGTTGGATGAGATTGAACGTGAATTTGAAGCTGC 1067
Query 1104 TACAAATAGTCTTAAGCAACTAAACCTTGACGATTTCAGTGAAGGAGATGACAGTGCAGA 1163
|||||||||||||||||||||||||||||||||||||| |||||||||||| | || | |
Sbjct 1068 TACAAATAGTCTTAAGCAACTAAACCTTGACGATTTCACTGAAGGAGATGATAATGAACA 1127
Query 1164 ATCTGCAAGGAGAAATAGTATGCTTGAAGCTATCGAACGCGAGTTTGAAGCTGCTACAAA 1223
|||||||| |||| ||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1128 ATCTGCAAAGAGACATAGTATGCTTGAAGCTATAGAACACGAGTTTGAAGCTGCTACAAA 1187
Query 1224 AGGTCTTGAAGAGCTAAAGGCTAATGATTCAACCGGCGACAAGGATGATGATGAACACGT 1283
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1188 AGGTCTTGAAGAGCTAAAGGCTAATGACTCAACCGGCGACAAGGATGATGATGAACACGT 1247
Query 1284 TGCAAGGAGAAAAATTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCCGCGACAAAAGG 1343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1248 TGCAAGGAGAAAAATTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCCGCGACAAGAGG 1307
Query 1344 CCTTGAAGAGTTAAAGAATGAATCAGAACAAGCTGAAAACAAGAGAAACAGTATGTTGGA 1403
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1308 CCTTGAAGAGTTAAAGAATGAATCAGAACAAGCTGAAAACAATAGAAAGAGTATGTTGGA 1367
Query 1404 AGCATTCGAACGCGAATTTGAAGCTGCTACAAATGCAAAGGCTAATGGAGAAAACTCTGC 1463
||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 1368 GGCAATCGAACGCGAATTTGAAGCTGTTACAAATGCCAAGGCTAATGGAGAAGACTCTGC 1427
Query 1464 AAAGAATCCATCAACCATAAGTACTACAGTGCAGAAATCTTCTGGCGGATACAATGCTGG 1523
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1428 AAAGAATCCATCAACCATAAG---TACAGTGCAGAAAACTTCTGGCGGATACAATGCTGG 1484
Query 1524 TTTAGAAGGTCTTCTAAAGCCTGCAGATGGTGTATGTGGTTGTTTCAACAAGGATAAAGA 1583
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1485 TTTAGAAGGTCTTCTAAAGCCTGCAGATGGTGTATGTGGTTGTTTCAACAAAGAAAAAGA 1544
Query 1584 TGGTCTTCAGGCAGACACTGATTCTTCGATTAACATAGCGGAGATACTCGCAGAAGAATC 1643
||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1545 TGGCCTTCAGGCAGACACGGATTCTTCGATTAACATAGCAGAGATACTCGCTGAAGAATC 1604
Query 1644 CAAATTACAGGGCTCAGGGACCTCTCGGCTCACCACATCATTGAACAATCTTGTTGATAC 1703
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1605 CAAATTACAGGGCTCAGGGACCTCTCCCCTCACCACATCATTGAACAATCTTGTTGATAC 1664
Query 1704 TCATAGAAAAGAAACGTCCTCAAAGGTAGGCTCAGTCCTTGGCTCATCTTCATCAGTTAC 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TCATAGAAAAGAAACGTCCTCAAAGGTAGGCTCAGTCCTTGGCTCATCTTCATCAGTTAC 1724
Query 1764 TTCTACCACAAGCGAATCAGCGGCTACATCAGAGAGCATAGAGAGCTTAAAGCAAACACT 1823
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1725 TTCTACCACAAGCGAATCAGCAGCTACATCAGAGAGCATAGAGAGCTTGAAGCAAACACT 1784
Query 1824 AAGGAAGCTACGCGGTCTAAGCGCACGTGATCTCGTAAACCACCCGAATTTCGATGCGAT 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 AAGGAAGCTACGCGGTCTAAGCGCACGTGATCTCGTAAACCACCCGAATTTCGATGCGAT 1844
Query 1884 TATAGCAGCCGGTACACGTTACGAGGTACTCAGCTCAGCTTCTATTGGTTACATCTCTTT 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 TATAGCAGCCGGTACACGTTACGAGGTACTCAGCTCAGCTTCTATTGGTTACATCTCTTT 1904
Query 1944 GCTAGCCAAATACAAAACCGTCATTAAAGAAGGACTCGAGGCTTCTCAGAGAGTCCAGAT 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 GCTAGCCAAATACAAAACCGTCATTAAAGAAGGACTCGAGGCTTCTCAGAGAGTCCAGAT 1964
Query 2004 TGCTCAAACCCGAGCCAAACTGCTAAAAGAAACCGCAATGGAGAAGCAGAGAACCGTAGA 2063
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TGCTCAGACCCGAGCGAAACTGCTAAAAGAAACCGCAATGGAGAAGCAGAGAACCGTAGA 2024
Query 2064 CTCGGTTTTCGCAGCAGCAAAGACCACTGCTCAAAGAGGAGACGCGTTGCACATCAGAAT 2123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 CTCGGTATTCGCAGCAGCAAAGACCACTGCTCAAAGAGGAGACGCGTTGCACATCAGAAT 2084
Query 2124 CGTAGCGATCAAGAAACTGTTGGCAAAGCTAGAAGCAGAGAAAGTG-GACGTTGATTCAA 2182
||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 2085 CGTGGCGATCAAGAAACTGTTGGCAAAGCTTGAAGCAGAGAAAGTGAG-CGTTGATTCAA 2143
Query 2183 AGTTCACCTCTTTAACGACGAGTCTGTCAGAGCTTCTCAAGGAGGCGTCACAGGCTTACG 2242
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2144 AGTTCACCTCTTTAACGACGAGTCTGTCAGAGCTTCTCAAGGAGGCTTCACAGGCTTACG 2203
Query 2243 AAGAGTATCACGAGGCGGTGCATAAGGCAAAGGACGAGCAAGCGGCTGAGGAATTTGCGG 2302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 AAGAGTACCACGAGGCGGTGCATAAGGCAAAGGACGAGCAAGCGGCTGAGGAATTTGCGG 2263
Query 2303 TGGAGACGACAAAGAGAGCAGAACATATTTGGGTTGAGTTTCTTAGTTCACTTAATTGA 2361
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2264 TGGAGACGACAAAAAGAGCAGAACATATTTGGGTCGAGTTTCTTAGTTCACTTAATTGA 2322
> Ahg474366 jgi|Araly1|474366|fgenesh2_kg.1__4320__AT1G52410.1
Length=2527
Score = 211 bits (114), Expect = 2e-53
Identities = 239/298 (80%), Gaps = 14/298 (5%)
Strand=Plus/Plus
Query 1069 ATGTTGGATGAGATTGAACGTGAATTTGAAGCTGCTACAAATAGTCTTAAGCAACTAAA- 1127
|||||||| || || ||||| ||||||||||||||| ||| |||||| || ||||||||
Sbjct 442 ATGTTGGAAGAAATCGAACGCGAATTTGAAGCTGCTTCAAGTAGTCTGAAACAACTAAAG 501
Query 1128 CCTTGACGATTTCAGTGAAGGAGATGACAG-TGCAGAATCTGCAAGGA-GAAATAGTATG 1185
| ||| || | | |||||| |||| | | | ||||||||| || | || ||| ||
Sbjct 502 AC-TGATGAAATAAACGAAGGAAATGA-TGAAGAACAATCTGCAAAGAGGCAA-AGTTTG 558
Query 1186 CTT-GAAGCTATCGAACGCGAGTTTGAAGCTGCTACAAAAG-GTCTTGAAGAGCTAAAGG 1243
|| |||| |||||||||||||| |||||||||||||||| | |||||| | |||||||
Sbjct 559 -TTGGAAGAGATCGAACGCGAGTTCGAAGCTGCTACAAAAGAG-CTTGAACAACTAAAGG 616
Query 1244 CTAATGA-TTCAACCGGCGACAAGGATGATGATGAACACGT-TGCAAGGAGAAAAATTAT 1301
|||||| ||| ||||| || || ||||| || ||||| | ||||| |||||||| |||
Sbjct 617 TTAATGACTTC-ACCGGTGAAAAAGATGACGAAGAACA-ATCTGCAAAGAGAAAAAGTAT 674
Query 1302 GCTTGAAGCTATTGAACGCGAGTTTGAAGCCGCGACAAAAGGCCTTGAAGAGTTAAAG 1359
|||||||||||||||||||||||||||||| || | ||||| ||||||| |||||
Sbjct 675 GCTTGAAGCTATTGAACGCGAGTTTGAAGCTGCTATGGAAGGCATTGAAGAACTAAAG 732
Score = 158 bits (85), Expect = 3e-37
Identities = 497/682 (73%), Gaps = 84/682 (12%)
Strand=Plus/Plus
Query 800 ATGATGAAGCACAATCTGCAAAGAGACAGAA-TATGCTAGATGAGATCGAACGGGAGTTT 858
||||||||| ||||||||||||||| || || | || | || ||||||||||| |||||
Sbjct 524 ATGATGAAGAACAATCTGCAAAGAGGCA-AAGTTTGTTGGAAGAGATCGAACGCGAGTTC 582
Query 859 GAAGCTGCTACAAGTG-GTCTTAAAGAGCTAAAGATTAATG-C-TCACACTGTCAAAGAT 915
||||||||||||| | | ||| || | |||||| |||||| | |||| | || ||| |
Sbjct 583 GAAGCTGCTACAAAAGAG-CTTGAACAACTAAAGGTTAATGACTTCAC-CGGTGAAA-A- 638
Query 916 GATGTTGATGATAAAGAACAAGATGCCAAA-AGACAAAGTATGCTAGATGCAATTGAACG 974
| ||||| |||||||| || |||| ||| |||||||||| || || ||||||||
Sbjct 639 -A----GATGACGAAGAACAATCTG-CAAAGAGAAAAAGTATGCTTGAAGCTATTGAACG 692
Query 975 TGAGTTTGAAGCCGTTACCG-AGAGTTTTAAACAACTTGAAGATATC-GCCGATAAC-AA 1031
||||||||||| | || | || | || || ||| | ||| | || | || | |
Sbjct 693 CGAGTTTGAAGCTGCTATGGAAG-GCATTGAAGAAC-TAAAGGTTTCTGATTCTACCGGA 750
Query 1032 AGCT-GA-AGGA-GACG-ACGAATCTGCAAAGAGGCAAAGTATG-TTGGATGAGATTGAA 1086
|| | || | || || | || ||||||||||||| | ||||||| || || ||||| |||
Sbjct 751 AG-TGGAGATGATGAAGAAC-AATCTGCAAAGAGACTAAGTATGCTT-GAAGAGATCGAA 807
Query 1087 CGTGAATTTGAAGCTGCTACAAATAGTCTT-AAGCAACTAAA-CCTTGACGATTTC-A-- 1141
|| |||||||||||||||||||| ||||| || |||||||| | || ||| ||| |
Sbjct 808 CGGGAATTTGAAGCTGCTACAAAGGGTCTTGAA-CAACTAAAGGC-TGGCGA-TTCAACC 864
Query 1142 -GTGA-AGGAGATGACAG-TGCAGAATCTGC-AAGGAGA-AATAGTATGCTT-GAAGCTA 1195
| || | | | || || | | || |||| |||| || || ||| || || |||| |
Sbjct 865 GGGGACA-AAAACGA-AGAAGAACAAGCTGCAAAGG-GACAA-AGTTTG-TTAGAAGAGA 919
Query 1196 TCGAACGCGAGTTTGAAGCTGCTACAAAAG-GTCTTGAAG--AGC-TAAAGGCTAATGAT 1251
||||||| ||||| ||||||||||| | || | ||| ||| | | | || | | |||||
Sbjct 920 TCGAACGAGAGTTCGAAGCTGCTAC-AGAGAGCCTT-AAGCTA-CTTCAA-GTTGATGAT 975
Query 1252 TCAACCGGCGACAAGGATGATGATGAACACGT-TGCAAGGAGAAAAATTATGCTTGAAGC 1310
|| | | | || || | | ||||| | ||||| ||| ||| |||||| ||||
Sbjct 976 TCTA-C--TG--AA-GA-CA-CA-GAACA-ATCTGCAAAGAGGCAAAGTATGCTGGAAGA 1025
Query 1311 TATTGAACGCGAGTTTGAAGCCGCGACAAAAGGCCTTGAAGAGTTAAA-GAATGAATCAG 1369
|||||||| || |||||||| || ||||||| ||| || | |||| || | | | |
Sbjct 1026 GATTGAACGTGAATTTGAAGCTGCAACAAAAGATCTTAAACAACTAAATGATTTCA-CTG 1084
Query 1370 AA--CAA-GC---TGA--AA-A-----C-AAGAGAAACAGTATGTTGGAAGCATTCGAAC 1414
|| ||| || ||| || | | |||||||||| |||||||||| | ||||||
Sbjct 1085 AAGGCAATGCTGATGATGAACACTCTGCAAAGAGAAACAAAATGTTGGAAGAAATCGAAC 1144
Query 1415 GCGAATTTGAAGCTGCTACAAA 1436
||||||||||||||||||||||
Sbjct 1145 GCGAATTTGAAGCTGCTACAAA 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97092034505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5