BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15960.1

Length=1473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929408 jgi|Araly1|929408|scaffold_301865.1                        558    3e-158


> Ahg929408 jgi|Araly1|929408|scaffold_301865.1
Length=364

 Score =  558 bits (302),  Expect = 3e-158
 Identities = 331/345 (96%), Gaps = 2/345 (1%)
 Strand=Plus/Plus

Query  1130  GTACTAGATTGCTCAAAGAAATGGCCGTGGAGAAGCAGAAAAATGTAGACGCTGAGTTAG  1189
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     GTACTAGATTGCTCAAAGAAATGGCCGTGGAGAAGCAGAAAAATGTAGACGCTGAGTTAG  60

Query  1190  CATTAGTCAAGGCTTTGGCTGAGAGAGGAGACATGTTGTACGTGAAAATATTTGCGATCA  1249
             ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61    CATTAGTCAAGACTTTGGCTGAGAGAGGAGACTTGTTGTACGTGAAAATATTTGCGATCA  120

Query  1250  AGAAACTGAT-TTCGAAACTTGAGGCCGAGAAGTATGAGGTTGATATGACTTTCGAAAAG  1308
             |||||||| | || ||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct  121   AGAAACTGGTGTT-GAAACTTGAGGCCGAGAAGGAAGAGGTTGATATGACTTTCGAGAAG  179

Query  1309  ACAGTTGCGAATCTATCACGCGTTATAGAGGAGGCTTCTCAAGCTTACGAGGAGTATCAT  1368
             || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180   ACGGTTGTGAACCTATCACGCGTTATAGAGGAGGCTTCTCAAGCTTACGAGGAGTATCAT  239

Query  1369  GTGGTCGTGCGTAAGTGGAAAGAGGAACAAGCATCTGAGGAATTCTCGCGTGAGGCCATT  1428
             |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240   GTGGTTATGCGTAAGTGGAAAGAGGAACAAGCATCTGAGGAATTCTCGCGTGAGGCCATT  299

Query  1429  GAGAGGGTAGAGATGGTTTGGGTTGAGTTTCTCAGCACTCTCTAG  1473
             ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  300   GAGAGGGTAGAGATGGTTTGGGTTGAGTTTCTCGGCACTCTCTAG  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55116584515


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5