BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15970.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479051 jgi|Araly1|479051|fgenesh2_kg.3__1752__AT3G15970.1 2098 0.0
Ahg923761 jgi|Araly1|923761|scaffold_105042.1 409 4e-113
> Ahg479051 jgi|Araly1|479051|fgenesh2_kg.3__1752__AT3G15970.1
Length=1612
Score = 2098 bits (1136), Expect = 0.0
Identities = 1444/1587 (91%), Gaps = 43/1587 (3%)
Strand=Plus/Plus
Query 156 ATGGGGGACTCCGATAATGCTATACCATTTTCCAGAAAGAGAACTGCTCTGAAA-GAGCT 214
||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||| |||||
Sbjct 42 ATGGGGGACTCAGATAATGCTATACCATTTTCCAAAAAGAGAGCTGCTCT-AAACGAGCT 100
Query 215 GTCTCGTGACAATCCTGGTCTTGATGATGATGATGAAGACACTTCTGCACTCGAGAGTGG 274
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 101 GTCTCGTGACAATCCTGGTCTTGATGATGA--A-GAAGACACTTCTGCACTCGAGAGTGG 157
Query 275 TACCTTCAACACTGCTAGTAAGGAGGTGTTGGCAAGCAGAAGAATTATCAGAGTTAGGCG 334
||||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||| |||
Sbjct 158 TACCTTCAAGACTGCTAGTGAGGAGGTGTTGGCAAGCAGAAGAATTGTCAAAGTTAAGCG 217
Query 335 CACAGATCGATCTGCT--A-CTGCA-C--CACCAGCTTCTAATCCATTTACTGGAATTCG 388
|| ||||| ||||||| | | ||| | |||||||||| ||||||||| ||||||||||
Sbjct 218 CAGAGATCCATCTGCTGCAGCAGCACCAGCACCAGCTTCCAATCCATTTGCTGGAATTCG 277
Query 389 TTTGGTTCCTTTTACTG--CTC-CTGC---TCCTTCT-A--CTGCTGCTGCAGAAAC-GA 438
|||||| ||||| |||| ||| |||| || || | || ||| ||| | | |
Sbjct 278 TTTGGTCCCTTTAACTGTTCTCGCTGCAGAAACTACTAAGCCT-CTG-TGC-GGGTCATA 334
Query 439 CTAAACCTCTGTCTGCGGGAAAACAAGAGACACTGGCTGATGGAAGGTCTGATGCTACCA 498
| || ||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 335 TTCAA-CTCCGTCTGAGGGAAAACAAGAGACACTGGATGATGGAAGTTCTGATGCTACCA 393
Query 499 AGGAAACTGATGGTGAC-AGTAAAGAAAAGAGTGACGCAATTGATGCTGTAGGAAAACAA 557
||||||||||||||||| || |||||| ||||||||||| |||||||| | |||||||||
Sbjct 394 AGGAAACTGATGGTGACAAG-AAAGAAGAGAGTGACGCAGTTGATGCTCTTGGAAAACAA 452
Query 558 GAGACACAGGGTGATGAAATATCTGCTAAGACCAAGGATATTATTGATGGTGGAGAGAAA 617
|||||||||| ||||| |||||||| ||||||||||||| | |||||||||| |||||
Sbjct 453 GAGACACAGGATGATGGAATATCTGATAAGACCAAGGATGCTGTTGATGGTGGCGAGAAT 512
Query 618 GAGATGAGTGAGGCAGTTAATTCCGTAGAGGGTGGTGGAGCTGTAAACAAGAATGAAGAC 677
|||| || ||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct 513 GAGAAGACTGAGGCAGTTAATACTGGAGAGGGTGGTGGAGCTGGAAACAAGAATGAAGAA 572
Query 678 GAGATTAAGACAACGATGGTTACT-GAAGTTGCTGCTGGGGAAGAGACTG-----T-AAA 730
|||||||| ||||||| | || | |||| |||||||||||||||||||| | ||
Sbjct 573 GAGATTAAAACAACGACAG-TAATCGAAGCTGCTGCTGGGGAAGAGACTGAAAAATCTAA 631
Query 731 AGATGACAACAACAATAGCAACACTGTTGAGGGAAGTGACTGTGTTGTCAAGGATACAGG 790
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 632 AGATGACAACGACAATGGCAACACTGTTGAGGGAACTGACTGTGTTGTCAAGGATTCAGG 691
Query 791 TGGTAATCAGACTGAGAAAGAAGGAAAAGAGGGCGATGGAAATGAAGACACAGAGAAAAA 850
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TGGTAATCAGACTGAGGAAGAAGGAAAAGAGGGCGATGGAAATGAAGACACAGAGAAAAA 751
Query 851 TGGAGATAGTGGAGCCTTGAGCTCCTTCCACCAGCACTCAAGTAGCAAAAACGCATTCAC 910
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 752 TGGAGATAGTGGAGCCTTGAGCTCCTTCCACCAGCACTCTAGTAGCAAAAACGCATTCAC 811
Query 911 AGGACTTGCTAGCACAGGGTTCTCTGCTTCTTCGTTCTCGTTCGGTTTGGTTCCACAAGA 970
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 812 AGGACTTGCTAGTACAGGTTTCTCTGCTTCTTCTTTCTCGTTCGGTTTGGTTCCACAGGA 871
Query 971 AGGTTCGACTGGGTCTG-GTTCTGAACAGTCATCCTTCAGTTTTGGCCAAGCAAAC-AAT 1028
|||||||||||||||| | |||||||||||||||| || ||||||| || ||| |||
Sbjct 872 AGGTTCGACTGGGTCTCTGA-CTGAACAGTCATCCTTTAGCTTTGGCCT-GCCAACCAAT 929
Query 1029 GGAAACTCTTCCCTGTTTGGTGCATCCGTTGCTACTTCCATTACCACGAAGAGCACGGAA 1088
||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 930 GGAAACTCTTCCCTGTTTGGTGCGTCCGTTTCTACTTCCATTACCATGAAGAGCACGGAA 989
Query 1089 ACTACTACTGCCTTCCCATCAAAGCAAGATGTTTCAGTGGAAACAGGAGAAGAGAACGAA 1148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 ACTACTACTGCCTTCCCATCAAAGCAAGATGTTTCAGTGGAAACAGGAGAAGAGAACGAG 1049
Query 1149 AAAGCAGCCTTCACAGCTGACTCAGTAATGTTCGAATATCTTGAGGGAGGATGGAAAGAG 1208
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1050 AAAGCAGCCTTCACAGCTGATTCAGTAATGTTTGAATATCTTGAGGGAGGATGGAAAGAG 1109
Query 1209 CGTGGGAAAGGAGAACTCAAGGTGAATATATCAACGACTGAAAACAGAAAAGCCAGGTTA 1268
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1110 CGTGGGAAAGGAGAACTCAAGGTAAATATATCAACGACTGAAAACAGAAAAGCCAGGTTA 1169
Query 1269 GTAATGAGATCAAAAGGAAACTACAGGTTGACCTTAAACGCAAGTCTTTACCCGGAAATG 1328
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1170 GTAATGAGATCAAAAGGAAACTACAGGTTGATCTTAAACGCAAGTCTTTACCCGGAAATG 1229
Query 1329 AAACTGGCTAAAATGGACAAGAAAGGAATCACATTTGCTTGTGTGAATAGTGTAAGTGAC 1388
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AAACTGGCTAACATGGACAAGAAAGGAATCACATTTGCTTGTGTGAATAGTGTAAGTGAA 1289
Query 1389 GCCAAGGATGGTCTCTCTACATTGGCACTGAAGTTCAAGGACCCAACAGTGGTGGAAGAG 1448
||||||||||||||||||||||| ||||| ||||||||||| ||||| || || ||||||
Sbjct 1290 GCCAAGGATGGTCTCTCTACATTTGCACTCAAGTTCAAGGATCCAACGGTTGTAGAAGAG 1349
Query 1449 TTCCGAGCAGTTATCGAAGAACATAAAGACAGTAAACCTTCCGTTGCAGAAGCAGCAGCT 1508
||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 1350 TTCCGAGCAGTTATCGAAGCACATAAAGACAGTAAGCCCGCCGTTGCAGAAGCAGCAGCT 1409
Query 1509 CCTTTGAAGACACCTGAGAACTCACCGAGTGCTGAAGATGCTTGAAGGTTAAAAACTTTG 1568
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1410 CCTTTGAAGACACCTGAGAACTCACCGAGTGCTGAAGATGCTTGAAGGTAAAAAACTTCG 1469
Query 1569 AAACAACTCGTCGTCTAGTATCCTTGTGTTCTATTTGTCTATGTTGTTTGAAGTTCAAAT 1628
||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1470 AAACAT-TCGTCGTCTAGTATCCTTGTGTTCT-T--GTCTATGTTGTTTGAAGTTCAAAT 1525
Query 1629 TTGGCAGAGAGAATAGAGAGACTATATAGATCACTTGAACTCCTTATGGGTCTCTTATGA 1688
||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||
Sbjct 1526 TTGGCAGAGAGAATAGAGAGATTATATAGACCAATTGAACTCCGTATGGGTCTCTTATGA 1585
Query 1689 ATGAATATTCGAAGTTACTGTTTTTAA 1715
||||| |||| | ||||||| ||||||
Sbjct 1586 ATGAACATTCCATGTTACTGCTTTTAA 1612
> Ahg923761 jgi|Araly1|923761|scaffold_105042.1
Length=1363
Score = 409 bits (221), Expect = 4e-113
Identities = 617/800 (77%), Gaps = 60/800 (8%)
Strand=Plus/Plus
Query 780 AAGGATACAGGTGGTAATCAGACTGAGAAAGAA-GGAAAAGAGGGCGATGGAAATGAAGA 838
||| || |||| ||| ||||| |||||||| || | |||||| ||| | |||| ||||||
Sbjct 582 AAGAATTCAGGAGGTGATCAGGCTGAGAAA-AACGAAAAAGAAGGCAACGGAATTGAAGA 640
Query 839 CA-CAGAGAAAAATGGAGATAGTGGAGCCTTGAGCTCCTTCCACCAGCACTCAAGTAGCA 897
| |||| || || || |||| ||| || || || || ||||| ||||| ||||||| ||
Sbjct 641 -AGCAGATAAGAACGGCGATAATGGTGCTTTCAGTTCATTCCAACAGCATTCAAGTAACA 699
Query 898 AAAACGCATTCACAGGACTTGCTAGCACAG-GGTTCTCTGCTTCTTCGTTCTCGTTCGGT 956
||||||||||||| |||||||| || |||| || | |||| ||||||||||| || |||
Sbjct 700 AAAACGCATTCACCGGACTTGCCAGTACAGAGGCT-TCTGGGTCTTCGTTCTCATTTGGT 758
Query 957 TTGGTTC-CACAAGAAGGTTCGACTGGGT-CTGGTTCTGAACAGTCATCCTTCAGTTTTG 1014
|||| || | || || ||||| ||| ||| | || ||| | || | || | ||||
Sbjct 759 TTGG-TCTCTCAGGATGGTTCAACT-GGTACCGGGTCT---C--TC-T--TT-GGATTTG 807
Query 1015 G----CCAAGCAAACAATGGAAACTCTTCCCTGTTTGGTGCATCCGTTGCTACTTCCATT 1070
| |||||| | |||| |||||||| || || |||||| | | | | ||||||||
Sbjct 808 GCCTTCCAAGC-AGCAAT---AACTCTTCTCTATTCGGTGCA-AC-TGGAT-CTTCCATT 860
Query 1071 ACCACGAAGAGCACGGAAACTACTACTGCCTTCCCATCAAAGCAAGATGTTT-CAGTGGA 1129
| || | | || || | | || || || || |||||||||| |||| || ||
Sbjct 861 ATCAAG-A-AG-ACTG--A-GGGTAGTGGGTTTCCGCCAAAGCAAGAGGTTTCCA-CAGA 913
Query 1130 AACAGGAGAAGAGAACGAAAAAGCAGCCTTCACAGCTGACTCAG-TAATGTTCGAATATC 1188
|||||| |||||||| || |||| |||||| |||||||||| | | |||||||||||||
Sbjct 914 AACAGGTGAAGAGAATGAGAAAGTTGCCTTCTCAGCTGACTC-GATTATGTTCGAATATC 972
Query 1189 TTGAGGGAGGATGGAAAGAGCGTGGGAAAGGAGAACTCAAGGTGAATATATCAACGACTG 1248
|||| |||||||||||||||||||||||||||||||||||||| || | || | | |
Sbjct 973 TTGATGGAGGATGGAAAGAGCGTGGGAAAGGAGAACTCAAGGTAAACGTCTCCA-G--T- 1028
Query 1249 AAAACAGA-AAAGCCAGGTTAGTAATGAGATCAAAAGGAAACTACAGGTTGACCTTAAAC 1307
|| | ||||| || ||||| |||||| | |||||||||||||| |||| |||||||
Sbjct 1029 AATGGTGGTAAAGCAAGATTAGTTATGAGAGCTAAAGGAAACTACAGATTGATCTTAAAC 1088
Query 1308 GCAAGTCTTTACCCGGAAATGAAACTGGCTAAA-ATGGACAAGAAAGGAATCACATTTGC 1366
|| ||||||||||| ||||||||||| || | ||||| || |||||||||||||| ||
Sbjct 1089 GCGAGTCTTTACCCAGAAATGAAACTTGC-AGCCATGGATAAAAAAGGAATCACATTCGC 1147
Query 1367 TTGTGTGAATAGTGTAAGTGACGCCAAGGATGGTCTCTCTACATTGGCACTGAAGTTCAA 1426
||||||||||||||||||||| | ||| || |||||||||||||| ||||||||||||||
Sbjct 1148 TTGTGTGAATAGTGTAAGTGAAGGCAAAGAAGGTCTCTCTACATTTGCACTGAAGTTCAA 1207
Query 1427 GGACCCAACAGTGGTGGAAGAGTTCCGAGCAGTTATCGA-AGAACATAAAGACAGTAAAC 1485
||||| ||| | ||||||||||| || | || || || | |||| |||||||||||||
Sbjct 1208 AGACCCGACAATCGTGGAAGAGTTTCGTGTAGCCATTGACA-AACACAAAGACAGTAAAC 1266
Query 1486 CT-TCC-GTT-GCAGAAGCAG---CAGCTC-CT-T-TGAAGACACCTGAGAACTCACCGA 1536
| | | |||| || || |||||| | | ||||||||||||||||||| || |
Sbjct 1267 CAATGGAGAAAGCAGCAGAAGAATCAGCTCTCCCTCTGAAGACACCTGAGAACTCTCCAA 1326
Query 1537 GTGCTGA-AGATGCTTGAAG 1555
||| | |||| |||||||
Sbjct 1327 CAGCT-ACAGATACTTGAAG 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5