BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16010.1
Length=2077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479057 jgi|Araly1|479057|fgenesh2_kg.3__1758__AT3G16010.1 3116 0.0
Ahg943724 jgi|Araly1|943724|scaffold_604268.1 641 0.0
Ahg942315 jgi|Araly1|942315|scaffold_602859.1 309 5e-83
> Ahg479057 jgi|Araly1|479057|fgenesh2_kg.3__1758__AT3G16010.1
Length=2024
Score = 3116 bits (1687), Expect = 0.0
Identities = 1920/2033 (94%), Gaps = 14/2033 (1%)
Strand=Plus/Plus
Query 45 TAAAACCACCGACGGCGACTTCAAATAGACGTCGGAATTT-GTCGCCACCGGAGAATTGT 103
||||||||||||||||||||| |||||| ||| ||| ||| ||||||||| | | | |||
Sbjct 1 TAAAACCACCGACGGCGACTTGAAATAG-CGTTGGAGTTTGGTCGCCACC-G-G-ACTGT 56
Query 104 TACATGTGAATCCCGTTTTATAAAGATGATGTATGTATCTGCTCGATCCGGTTCT-GCGA 162
||||||| || | || |||||||||||| ||||| |||| || |||||| | || ||||
Sbjct 57 TACATGTAAAACACG-TTTATAAAGATGGTGTATATATCGGCGCGATCC-ATACTCGCGA 114
Query 163 AGCGAAGCATCTCAAGTCTA-CCTCATCTCTCTCAGAGATTTAAACAAACAGAGAATGAG 221
||||||| |||| |||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 115 AGCGAAGTGTCTCGAGTCTACCCT-ACCTCTCTCAGAGATTTAAACAAACAGAGAATGAG 173
Query 222 ATTGTTCAAATGTTTAGTGTTCCGAATCATGAGGAATCTGAGAAGCCTCAAGAGAAGTGG 281
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 174 ATTGTTCAAATGTTTAGTATTCCGAATCATGAGGAATCTGAGAAGCCTCAAGAGAAGTGG 233
Query 282 AAATTATCTA-GAAAGGATCCGTCAGTGCGGATGTTGGATGAGAGATTCATTAGGATAGT 340
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 234 AAATTATCTAGGAAA-GATCCGTCAGTGCGAATGTTGGATGAGAGATTCATTAGGATAGT 292
Query 341 GAAAATCTTCAAATGGGGACCTGATGCTGAGAAAGCTCTTGAGGTGCTTAAACTGAAAGT 400
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 293 GAAAATCTTCAAATGGGGACCTGATGCTGAGAAAGCTCTTGAGGTACTTAAACTGAAAGT 352
Query 401 TGATCATCGATTAGTTCGTTCGATTCTTGAGATAGACGTTGAGATAAATGTCAAGATTCA 460
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 353 TGATCACCGATTAGTTCGTTCGATTCTGGAAATAGACGTTGAGATAAATGTCAAGATTCA 412
Query 461 GTTTTTCAAATGGGCTGGTAAAAGAAGAAACTTTCAGCATGATTGCTCCACTTACATGAC 520
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 413 GTTTTTCAAATGGGCTGGTAAAAGAAGAAACTTTCAGCATGATTGTTCCACTTACATGGC 472
Query 521 CTTAATACGCTGCCTTGAAGAAGCTAGGCTTTATGGTGAAATGTATAGAACGATACAAGA 580
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 473 CTTAATACGTTGCCTTGAAGAAGCTAGGCTTTACGGTGAAATGTATAGAACGATACAAGA 532
Query 581 AGTGGTCCGTAACACATATGTTAGCGTTAGTCCAGCAGTACTCTCTGAGCTTGTGAAAGC 640
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 533 GGTGGTTCGTAACACATATGTTAGCGTTAGTCCGGTAGTACTCTCTGAGCTTGTGAAAGC 592
Query 641 ATTGGGGCGAGCTAAGATGGTTAGTAAAGCTTTATCGGTTTTTTATCAGGCAAAAGGACG 700
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 593 ATTGGGGCGAGCTAAGATGGTTAGTAAAGCTTTGTCGGTTTTTTACCAGGCGAAAGGACG 652
Query 701 CAAGTGTAAACCCACTTCGAGCACTTACAACTCGGTGATTCTAATGTTGATGCAAGAAGG 760
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 653 CAAGTGCAAACCCACTTCGAGCACTTATAACTCGGTAATTCTAATGTTGATGCAAGAAGG 712
Query 761 ACAGCACGAGAAAGTCCATGAGGTTTATACTGAGATGTGTAACGAAGGTGACTGTTTTCC 820
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ACAACACGAGAAAGTCCATGAGGTTTATACTGAGATGTGTAACGAAGGTGACTGTTTTCC 772
Query 821 AGACACGATTACTTACTCTGCGCTTATATCCTCGTATGAAAAACTAGGTCGTAATGATTC 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGACACGATTACTTACTCTGCGCTTATATCCTCGTATGAAAAACTAGGTCGTAATGATTC 832
Query 881 TGCGATAAGGTTGTTTGATGAAATGAAGGATAACTGTATGCAGCCTACAGAGAAAATATA 940
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 833 TGCTATAAGGTTGTTTGATGAGATGAAGGATAACTGTATGCAGCCTACAGAGAAAATATA 892
Query 941 CACCACGTTGTTGGGAATTTACTTTAAGGTGGGTAAAGTTGAGAAAGCTTTAGATCTTTT 1000
|||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 893 CACCACGTTGCTGGGAATATACTTTAAGGTGGGTAAAGTTGAGAAAGCTTTGGATCTTTT 952
Query 1001 CGAGGAGATGAAACGAGCAGGTTGTTCACCAACAGTTTATACGTACACGGAACTGATAAA 1060
||||||||||||||||||||||| || || ||||||||||| ||||| |||||||||||
Sbjct 953 TGAGGAGATGAAACGAGCAGGTTGCTCGCCTACAGTTTATACTTACACAGAACTGATAAA 1012
Query 1061 GGGACTTGGCAAAGCTGGGAGGGTAGATGAAGCATATGGCTTCTATAAAGA-CATGCTTA 1119
||||||||||||||||||||||||||| |||||||||| || ||||| || ||||||||
Sbjct 1013 GGGACTTGGCAAAGCTGGGAGGGTAGAAGAAGCATATGATTTATATAA-GAACATGCTTA 1071
Query 1120 GAGATGGATTGACTCCTGATGTTGTGTTCTTAAACAATCTGATGAACATTTTAGGCAAAG 1179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CAGATGGATTGACTCCTGATGTTGTGTTCTTAAACAATCTGATGAACATTTTAGGCAAAG 1131
Query 1180 TGGGTCGAGTGGAGGAGTTGACAAATGTCTTCAGTGAGATGGGAATGTGGAGATGTACAC 1239
|||||||| |||||||||| || |||||||||| ||||||||||| |||||||||||||
Sbjct 1132 TGGGTCGATTGGAGGAGTTAACGAATGTCTTCAATGAGATGGGAACATGGAGATGTACAC 1191
Query 1240 CCACTGTTGTCTCATACAATACCGTGATTAAAGCTCTGTTTGAGTCAAAAGCACATGTTT 1299
| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1192 CGACTGTTGTTTCATACAATACCGTGATTAAAGCTCTATTTGAGTCAAAAGCACCTGTTT 1251
Query 1300 CGGAAGTAAGCTCTTGGTTTGATAAGATGAAAGCAGACAGTGTTTCCCCTAGTGAATTCA 1359
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1252 CGGAAGTGAGCTCCTGGTTTGATAAGATGAAAGCAGATGGTGTTTCCCCTAGTGAATTCA 1311
Query 1360 CTTACTCAATCCTTATAGATGGTTATTGTAAAACGAATAGAGTAGAGAAAGCTCTGTTGC 1419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CTTACTCTATCCTTATAGATGGTTATTGTAAAACGAATAGAGTAGAGAAAGCTCTGTTGC 1371
Query 1420 TGCTTGAGGAGATGGATGAGAAAGGTTTTCCACCTTGTCCTGCAGCGTATTGCAGCCTCA 1479
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TTCTTGAGGAGATGGATGAAAAAGGTTTTCCACCTTGTCCTGCAGCGTATTGCAGCCTCA 1431
Query 1480 TAAACGCTCTTGGAAAGGCGAAAAGATATGAAGCAGCGAATGAGCTATTTAAGGAACTAA 1539
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1432 TAAACGCTCTTGGAAAGGCAAAAAGATATGAAGCAGCAAATGAGCTATTTAAGGAACTAA 1491
Query 1540 AAGAAAACTTCGGCAATGTAAGTTCTCGAGTATACGCTGTGATGATCAAACATTTTGGGA 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 AAGAAAACTTCGGCAATGTAAGTTCTCGAGTATACGCTGTGATGATCAAACATTTTGGGA 1551
Query 1600 AATGCGGGAAGCTCAGCGAAGCTGTAGATCTCTTCAATGAGATGAAGAACCAAGGAAGTG 1659
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1552 AATGTGGGAAGCTCAGCGAAGCTGTAGATCTCTTCAATGAGATGAAGAACCAAGGAAGCG 1611
Query 1660 GTCCCGATGTTTATGCCTACAACGCCCTCATGTCAGGAATGGTAAAGGCTGGTATGATCA 1719
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1612 GTCCAGATGTTTATGCTTACAACGCCCTCATGTCAGGAATGGTAAAGGCTGGTATGGTAA 1671
Query 1720 ACGAAGCTAATTCCTTGCTTAGAAAGATGGAAGAAAACGGTTGCAGGGCCGATATAAACT 1779
| ||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1672 ATGAAGCTAATTCGTTGCTTAGAAAGATGGAAGAAAACGGTTGCACTGCGGATATAAATT 1731
Query 1780 CGCATAATATCATCCTCAATGGATTTGCTAGAACAGGTGTGCCGAGACGGGCTATAGAAA 1839
|||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1732 CGCACAATATCATCCTCAATGGATTTGCGAGAACAGGTGTGCCGAGGCGGGCTATAGAGA 1791
Query 1840 TGTTTGAAACTATAAAGCATTCTGGTATTAAGCCTGATGGTGTCACTTATAATACTCTTC 1899
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1792 TGTTTGAAACTATGAAGCATTGTGGTATTAAGCCTGATGGTGTCACTTATAATACTCTTC 1851
Query 1900 TTGGATGCTTTGCACATGCTGGAATGTTTGAGGAGGCTGCAAGAATGATGAGAGAGATGA 1959
|||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1852 TTGGATGCTTCGCACATGCTGGAATGTTTGAGGAAGCTGCAAGACTGATGAGAGAGATGA 1911
Query 1960 AAGATAAAGGCTTTGAGTATGATGCCATCACTTACTCATCTATACTTGACGCTGTTGGCA 2019
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 AAGATAAAGGATTTGAGTATGATGCCATCACTTACTCATCTATACTTGACGCTGTTGGCA 1971
Query 2020 ATGTGGATCATGAAAAAGATGATGTTTCATCTTTCTAAGATTTGATTTATCTA 2072
|| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 1972 ATATGGATCATGAAAAAGATGATGTTTCATCTTTGTAAGAGTTGATTTCTCTA 2024
> Ahg943724 jgi|Araly1|943724|scaffold_604268.1
Length=2002
Score = 641 bits (347), Expect = 0.0
Identities = 889/1135 (78%), Gaps = 99/1135 (9%)
Strand=Plus/Plus
Query 937 TATACACCACGTTGTTGGGAATT-TACTTTAAGGTGGGTAAAG-TTGAGAAAGCTTTAGA 994
||||| |||| ||||||| || ||||| ||| | || ||| ||||||||||||||
Sbjct 733 TATACCCCACCCTGTTGGG-CTTGTACTTGAAGTTCCGT-AAGTTTGAGAAAGCTTTACT 790
Query 995 TCTTTTCGAGGAGATGAAAC-GA-G-CAGGTTGTTCACCAACAGTTTA----TACGTACA 1047
|||| | ||||||||| ||| | | |||||| || ||| | |||| ||| ||||
Sbjct 791 TCTTGTGGAGGAGATGGAACAAACGCCAGGTTCCTCGCCAGCTTTTTATTCTTAC-TACA 849
Query 1048 CGGAACTGATAAAGGGACTTGGCAAAGCT-GGGAGGGTAGATGAAGCATATGGCTTCTAT 1106
|||||||||| |||| | ||| || || | |||| | |||| ||||| ||| | || ||
Sbjct 850 CGGAACTGATTAAGGAATTTGTCAGAG-TGGGGAAGATAGAAGAAGCTTATTG-TT-TAC 906
Query 1107 A-AAG-AC-ATGCTTAGAGATG-GATTGACTCCTGATGTTGTGTTCTTAAACAATCTGAT 1162
| | || | | |||| ||| | |||| ||| ||| |||| |||||||| || |||||
Sbjct 907 ATCTGAACGTTTC-TAGAAATGCG-TTGAGTCCCGATCTTGTCTTCTTAAAGAAGCTGAT 964
Query 1163 GAACATTTTAGGCAAAGTGGGTCGAGTGGAGGAGTTGACAAATGTCTTCAGTGAGATGGG 1222
||||||||| ||||| | ||| |||||||| ||| ||||| ||| | | | | | |
Sbjct 965 TAACATTTTAAGCAAAATAGGTAGAGTGGAGCTGTTAACAAAGGTC-GC-G-G-G-T--G 1017
Query 1223 AATGTGGAGATGTACA--CCCACTG-TTGTCTCATACAATACCGTGATTAAAG-CTCTGT 1278
|||||| || | || | | | || | || |||| | | ||||| | | |||| |
Sbjct 1018 --TGTGGACAT-T-CATGCATAGAGCTTAT-TCGTACAGTGCTTTGATT-ATGACTCTAT 1071
Query 1279 TTGAGTCAAAAGCACATGTTTCGGAAGTAAGCTCTTGGTTTGATAAGATGAAAGCAGACA 1338
||||||| ||||||| || ||| ||||| |||| || ||||||| ||||||| || |||
Sbjct 1072 TTGAGTCCAAAGCACCTGATTCAGAAGTGAGCTATTTGTTTGATGAGATGAAGGCTGACG 1131
Query 1339 GTGTTTCCCCTAG-TGAATTCACTTACTCAATCCTTATAGATGG-TTATTGTAAAACG-A 1395
||||||||||| | || ||| |||||| ||||||||||| |||| || |||| ||| | |
Sbjct 1132 GTGTTTCCCCT-GTTGGATTAACTTACGCAATCCTTATAAATGGCTT-TTGTGAAA-GAA 1188
Query 1396 ATAGAGTAGAGAAAGCTCTGTTGCTGCTTGAGGAGATGGATGAGAAAGGTTTTCCACCTT 1455
||| ||| ||||||||||||||||| |||||||||||||||||| ||| ||||| |||
Sbjct 1189 ATAAAGTGGAGAAAGCTCTGTTGCTTCTTGAGGAGATGGATGAGGAAGACCTTCCAACTT 1248
Query 1456 GTCCTGCAGCGTATTGCAGCCTCATAAACGCTCTTGGA-AAGGCGAAAAGATATGAAGCA 1514
| | |||||| || ||| ||||||| | || || || | ||| | | |||
Sbjct 1249 -T--TCCAGCGTGTTACAGATTCATAAA-G-TC---GATAA---G-AAA-CCA-G--GCA 1292
Query 1515 GCG-AATGAGCTATTTAAGGAACTAA-AAGAAAACTTCGGCAA-TGTAAGTTCTCGAGTA 1571
| | |||||||||| ||||||| || |||| || ||| | || ||||| || ||||||
Sbjct 1293 G-GAAATGAGCTATCTAAGGAA-GAAGAAGAGAATTTCCG-AATTGTAACTTGTCGAGTT 1349
Query 1572 TACGCTGTGATGATCAAACATTTTGGGAAATGCG-GG-AAGCTCAGCGAAGCTGTAGATC 1629
|| || || |||||||||||||||||| || ||| || ||||| | | || ||||
Sbjct 1350 TATGCGGTCATGATCAAACATTTTGGG-AA-GCGTGGAAAGCT---C--A--TG--GATC 1398
Query 1630 TCTTCAATGAGATG----A--A-GA--ACCAAG--G-AAGTGGTCCCGATGTTTATGCCT 1677
|||||||||||||| | | || |||||| | ||||||||| ||||| || || |
Sbjct 1399 TCTTCAATGAGATGATTAAGGAGGAGGACCAAGAAGAAAGTGGTCCTGATGTCTACGCTT 1458
Query 1678 ACAACGCCCTCATGTCAGGAATGGTAAAGGCTGGTATGATCA-ACGAAGCTAATTCCTTG 1736
|||| || || |||||||| ||||| |||||||||||||| | | |||||||||| |||
Sbjct 1459 ACAATGCGCTTATGTCAGGGATGGTGAAGGCTGGTATGAT-AGATGAAGCTAATTTGTTG 1517
Query 1737 CTTAGAAAGATGGAAGAAAACGGTTGCAGGGCCGATATAAACTCGCATAATATCATCCTC 1796
|||||||| |||||||| || || |||| || ||| | || |||||||||||||| |
Sbjct 1518 CTTAGAAAAATGGAAGAGAAGGGCTGCATCGCGGATGTGAATTCGCATAATATCATAATG 1577
Query 1797 AATGGATTTGCTAGAACAGGTGTGCCGAGA-CGGGCTATAGAAATGTTTGAAACTATAAA 1855
||||| |||||||||||||||||||| ||| |||||||||||| |||||||||| || ||
Sbjct 1578 AATGGGTTTGCTAGAACAGGTGTGCC-AGAGCGGGCTATAGAACTGTTTGAAACGATGAA 1636
Query 1856 GCATTCTGGTATTAAGCCTGATGGTGTCACTTATAATACTCTTCTTGGATGCTTT-GCAC 1914
|||||| || |||||||||||||| ||||||| ||||||||||||||||| ||| ||||
Sbjct 1637 GCATTCCGGGCTTAAGCCTGATGGTATCACTTACAATACTCTTCTTGGATG-TTTCGCAC 1695
Query 1915 ATGCTGGAATGTTTGAGGAGGCTGCAAGAATGATGAGAGAGATGAAAGATAAAGGCTTTG 1974
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1696 ATGCTGGAATGTTTAAGGAGGCTGCAAGAATGATGAGAGAGATGAAAGATGAAGGCTTTG 1755
Query 1975 AGTATGATGCCATCACTTACTCATCTATACTTGACGCTGTTGGCAATGTGGATCA 2029
||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1756 TGTATGATGCCATCACTTACTCATCTATACTTGAAGCTGACGGCAATGTGGATCA 1810
> Ahg942315 jgi|Araly1|942315|scaffold_602859.1
Length=524
Score = 309 bits (167), Expect = 5e-83
Identities = 224/251 (89%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 948 TTGTTGGGAATTTACTTTAAGGTGGGTAAAGTTGAGAAAGCTTTAGATCTTTTCGAGGAG 1007
||||| ||||| |||||||||| ||||||||||||||| |||||| |||||||| |||||
Sbjct 276 TTGTTTGGAATATACTTTAAGGAGGGTAAAGTTGAGAAGGCTTTACATCTTTTCCAGGAG 335
Query 1008 ATGAAACGAGCAGGTTG--TTCACCAACAGTTTATACGTACACGGAACTGATAAAGGGAC 1065
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 336 ATGAAACGAGCAGGTTGCTTTCA--AACGGTTTATACGTACACGGAACTGATAAAGGGAC 393
Query 1066 TTGGCAAAGCTGGGAGGGTAGATGAAGCATATGGCTTCTATAAAGACATGCTTAGAGATG 1125
|||| || |||||| ||||||| ||||||||||| || ||||| ||||||||||||||||
Sbjct 394 TTGGTAATGCTGGGTGGGTAGAAGAAGCATATGGTTTATATAAGGACATGCTTAGAGATG 453
Query 1126 GATTGACTCCTGATGTTGTGTTCTTAAACAATCTGATGA-A-CATTTTAGGCAAAGTGGG 1183
||||||||||||||||||| ||||||| | |||| |||| | ||| |||||||||| |||
Sbjct 454 GATTGACTCCTGATGTTGTCTTCTTAATCTATCTCATGAGAACATGTTAGGCAAAGCGGG 513
Query 1184 TCGAGTGGAGG 1194
||||||| |||
Sbjct 514 TCGAGTGAAGG 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78123092495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5